View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18482_low_24 (Length: 355)
Name: NF18482_low_24
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 33517339 - 33517663
Alignment:
| Q |
16 |
gtagtttggacaatatctcgttacaaatggataaagtaaactataactcagtttattactagcttcccttacacctgataatcatttaatttgtgaaaat |
115 |
Q |
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| T |
33517339 |
gtagtttggacaatatttcgttacaaatggataaagtaaactataactcagtttattactagcttcccttacacctgataattatttaatttgtgaaaat |
33517438 |
T |
|
| Q |
116 |
aataatcacacatgcatgcattgactatttttgttcatttgcttggcattgatagtttatttctataactaacttttattaagttagcatctctaatttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33517439 |
aataatcacacatgcatgcattgactatttttgttcatttgcttggcattgatagtttatttctataactaacttttattaagttagcatctctaatttt |
33517538 |
T |
|
| Q |
216 |
tgcaagtttgaacattacttccaataatatgaactaaatcatattgccatgtgatcaagcaggtgtcttgtcaaaaagcttcttcaagttatttaaaaga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33517539 |
tgcaagtttgaacattacttccaataatatgaactaaatcatattgccatgtaatcaagcaggtgtcttgccaaaaagcttcttcaagttatttaaaaga |
33517638 |
T |
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| Q |
316 |
agtgaagaaatcccatttcgttagt |
340 |
Q |
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||||||||||||||||||||||||| |
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| T |
33517639 |
agtgaagaaatcccatttcgttagt |
33517663 |
T |
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