View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18482_low_25 (Length: 318)
Name: NF18482_low_25
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_low_25 |
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| [»] scaffold1030 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 35138884 - 35138595
Alignment:
| Q |
17 |
acccatttgaggaatattagtagaagggatcatttgtgggagaaacatgtggaacaaaaatggagcaggttgctaggtaatgatgcttaccatgaatggg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35138884 |
acccatttgaggaatattagtagaagggatcatttgtgggagaaacatgtggaacaaaaatggagcaggttgctaggtaatgatgcttaccatgaatggg |
35138785 |
T |
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| Q |
117 |
agtatcatacaacaaaatataaggaactattgatggatcagaatctgagtgattcattaggaactattagtggtgattcttcatttcaacgcattcattc |
216 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |||||||| |
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| T |
35138784 |
agtatcatacaacaaaatataaggaactattagtggatcagaatctgagtgactcattaggaactactagtggtaattcttcatttcaacgaattcattc |
35138685 |
T |
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| Q |
217 |
ttatttgagaatcaatagacccatgactgatttgattaaaaatcattcaaaaatggctctatatatttttcttgagactggccgtttctg |
306 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35138684 |
ttatttgagaatcaatagatccatgactgatttgattaaaaatcattcaaaaatggctctatatatttttcttgagactggccgtttctg |
35138595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 35131576 - 35131287
Alignment:
| Q |
17 |
acccatttgaggaatattagtagaagggatcatttgtgggagaaacatgtggaacaaaaatggagcaggttgctaggtaatgatgcttaccatgaatggg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35131576 |
acccatttgaggaatattagtagaagggatcatttgtgggagaaacatgtggaacaaaaatggagcaggttgctaggtaatgatgcttaccatgaatggg |
35131477 |
T |
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| Q |
117 |
agtatcatacaacaaaatataaggaactattgatggatcagaatctgagtgattcattaggaactattagtggtgattcttcatttcaacgcattcattc |
216 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||| || ||||||||||||| ||||||| |||||||||||||||| |||||||| |
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| T |
35131476 |
agtatcatacaacaaaatataaggaactattagtggatcggaatctgagcgactcattaggaactactagtggtaattcttcatttcaacgaattcattc |
35131377 |
T |
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| Q |
217 |
ttatttgagaatcaatagacccatgactgatttgattaaaaatcattcaaaaatggctctatatatttttcttgagactggccgtttctg |
306 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35131376 |
ttatttgagaatcaatagatccatgactgatttgattaaaaatcattcaaaaatggctctatatatttttcttgagactggccgtttctg |
35131287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 22 - 306
Target Start/End: Complemental strand, 14278620 - 14278336
Alignment:
| Q |
22 |
tttgaggaatattagtagaagggatcatttgtgggagaaacatgtggaacaaaaatggagcaggttgctaggtaatgatgcttaccatgaatgggagtat |
121 |
Q |
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||||||||||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
14278620 |
tttgaggaatattagtagaggcgattgtttgtgggagaaacatgtcgaacaaaaatggagcaggttggtaggtgatgatgcttaccatgaatgggagtat |
14278521 |
T |
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| Q |
122 |
catacaacaaaatataaggaactattgatggatcagaatctgagtgattcattaggaactattagtggtgattcttcatttcaacgcattcattcttatt |
221 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||||||||| ||| ||||||| |||||||||||| |
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| T |
14278520 |
catacaacaaaatataaggaactattagtggatcaaaatctgagtgaaccatttggaactattagtggtgattctccatctcaacgccttcattcttatt |
14278421 |
T |
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| Q |
222 |
tgagaatcaatagacccatgactgatttgattaaaaatcattcaaaaatggctctatatatttttcttgagactggccgtttctg |
306 |
Q |
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||| |||||||||| || ||| || ||||||||||||||| |||||||||||| | ||||| | ||||||||||| || ||||| |
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| T |
14278420 |
tgaaaatcaatagaaccttgattggtttgattaaaaatcactcaaaaatggctttgtatatcctccttgagactggtcgcttctg |
14278336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 295
Target Start/End: Complemental strand, 14284099 - 14283826
Alignment:
| Q |
21 |
atttgaggaatattagtagaagggatcatttgtgggagaaacatgtggaacaaaaatggagcaggttgctaggtaatgatgcttaccatgaatgggagta |
120 |
Q |
| |
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|||||||||| || |||||||| ||| |||| |||||||||||||| |||||||| ||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
14284099 |
atttgaggaacatgagtagaagcgattatttatgggagaaacatgtcgaacaaaagtggagcatgttggtaggtaatgatgcttaccatgaatgggagta |
14284000 |
T |
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| Q |
121 |
tcatacaacaaaatataaggaactattgatggatcagaatctgagtgattcattaggaactattagtggtgattcttcatttcaacgcattcattcttat |
220 |
Q |
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|||||||||||||||||| | |||||| ||||||||||| |||| || | |||||||||||||||||||| | |||| |||| |||||||||| |
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| T |
14283999 |
tcatacaacaaaatataaaggactattagtggatcagaatttgaggagatcttctggaactattagtggtgattccttttttcgacgccatcattcttat |
14283900 |
T |
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| Q |
221 |
ttgagaatcaatagacccatgactgatttgattaaaaatcattcaaaaatggctctatatatttttcttgagact |
295 |
Q |
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|| | || ||||||| || ||| || ||| |||||||||||||| ||||||||| | |||||||| ||||||||| |
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| T |
14283899 |
ttaaaaagcaatagatccttgattgcttttattaaaaatcattc-aaaatggctttgtatattttccttgagact |
14283826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 49 - 306
Target Start/End: Complemental strand, 14258753 - 14258496
Alignment:
| Q |
49 |
tttgtgggagaaacatgtggaacaaaaatggagcaggttgctaggtaatgatgcttaccatgaatgggagtatcatacaacaaaatataaggaactattg |
148 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| | |||||| |
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| T |
14258753 |
tttgtgagagaaacatgtcgaacaaaaatggagcaggttggtaggtaataatgcttaccatgaatgggagtagcatacaacaaaatataaaggactatta |
14258654 |
T |
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| Q |
149 |
atggatcagaatctgagtgattcattaggaactattagtggtgattcttcatttcaacgcattcattcttatttgagaatcaatagacccatgactgatt |
248 |
Q |
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|||| || ||| ||||| |||| ||||||||||||| ||||||| |||| |||| |||||||||||||| || ||||||| || ||| | || |
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| T |
14258653 |
gtggagcataatttgagtagatcatgtggaactattagtgacgattctttctttcgacgccatcattcttatttgaaaagcaatagatccttgatttctt |
14258554 |
T |
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| Q |
249 |
tgattaaaaatcattcaaaaatggctctatatatttttcttgagactggccgtttctg |
306 |
Q |
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| T |
14258553 |
tgattaaaaatcattcaaaaatgcctttgtatattttccttgagactggtcgcttctg |
14258496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1030 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 22 - 306
Target Start/End: Original strand, 2870 - 3154
Alignment:
| Q |
22 |
tttgaggaatattagtagaagggatcatttgtgggagaaacatgtggaacaaaaatggagcaggttgctaggtaatgatgcttaccatgaatgggagtat |
121 |
Q |
| |
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||||||||||||||||||| | ||| | |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
2870 |
tttgaggaatattagtagaggcgattgtatgtgggagaaacatgtcgaacaaaaatggagcaggttggtaggtgatgatgcttaccatgaatggaagtat |
2969 |
T |
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| Q |
122 |
catacaacaaaatataaggaactattgatggatcagaatctgagtgattcattaggaactattagtggtgattcttcatttcaacgcattcattcttatt |
221 |
Q |
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||||||||||||| |||||||||||| ||||||| ||||||||||| |||| ||||||||||||||||||||| ||| ||||||| |||||||||||| |
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| T |
2970 |
catacaacaaaatgtaaggaactattagtggatcaaaatctgagtgaaccatttggaactattagtggtgattctccatctcaacgccttcattcttatt |
3069 |
T |
|
| Q |
222 |
tgagaatcaatagacccatgactgatttgattaaaaatcattcaaaaatggctctatatatttttcttgagactggccgtttctg |
306 |
Q |
| |
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||| |||||||||| || ||| || ||||||||||||||| |||||||||||| | ||||| || ||||||||||| || ||||| |
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| T |
3070 |
tgaaaatcaatagaaccttgattggtttgattaaaaatcactcaaaaatggctttgtatatcttccttgagactggtcgcttctg |
3154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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