View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18482_low_26 (Length: 309)
Name: NF18482_low_26
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 298912 - 298666
Alignment:
| Q |
14 |
cacagaccaattgaaattgcagtctctagcttatcaccagaccttaattccagctaaccgtagagactcaatggcttctgtttctccctcttgcagcttg |
113 |
Q |
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| T |
298912 |
cacagaccaattgaaattgcagtctctagcttatcaccagaccttaattccagctagccgtagagactcaatggcttctgtttctccctcttgcagcttg |
298813 |
T |
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| Q |
114 |
tcctctcaactctagttgctccaagtaggtttggtttgcattctacatgtgctgttctttgacgtagttttgtagctcggtcaatcaatgaagttccggc |
213 |
Q |
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| T |
298812 |
tcctctcaactctagttgctccaagtaggtttggtttgcattctacatgtgctgttctttgacgtagttttgtagctcggtcaatcaatgaagttccggc |
298713 |
T |
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| Q |
214 |
ctcttcatacatgctttgccaatccttaaattctgcatctgaaagat |
260 |
Q |
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| T |
298712 |
ctcttcatacatgctttgccaatccttaaattctgcatctgaaagat |
298666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 258
Target Start/End: Complemental strand, 301034 - 300877
Alignment:
| Q |
99 |
ccctcttgcagcttgtcctctcaactctagttgctccaagtaggtttggtttgcattctacatgtgctgttctttgacgtagttttgtagctcggtcaat |
198 |
Q |
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| T |
301034 |
ccctcttgcatcttgtcctc--aactccagttgccccaagtaggtttagtttgaattctacaagcgcttccttttgaggtagttttgcagtttggttaat |
300937 |
T |
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| Q |
199 |
caatgaagttccggcctcttcatacatgctttgccaatccttaaattctgcatctgaaag |
258 |
Q |
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| T |
300936 |
caatgaagtgcttccctcttcataaatgctttgccaatccttaaattctgcatccgaaag |
300877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 301067 - 301033
Alignment:
| Q |
17 |
agaccaattgaaattgcagtctctagcttatcacc |
51 |
Q |
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| T |
301067 |
agaccaattgaaattgcagtctctagcttatcacc |
301033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 183
Target Start/End: Original strand, 27465478 - 27465609
Alignment:
| Q |
50 |
ccagaccttaattccagctaaccgtagagactcaatggcttctgtttctccctcttgcagcttgtcctctcaactctagttgctccaagtaggtttggtt |
149 |
Q |
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| T |
27465478 |
ccagaccttgattccagcttgccgtagggactcaatggcttctggtacaccctcttgcagcttgtc--ctcaattccagttgctccaagtagatttaaat |
27465575 |
T |
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| Q |
150 |
tgcattctacatgtgctgttctttgacgtagttt |
183 |
Q |
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| T |
27465576 |
tgcattctataagagctgctgtttgacgtagttt |
27465609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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