View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18482_low_27 (Length: 308)
Name: NF18482_low_27
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 50243698 - 50243970
Alignment:
| Q |
18 |
gttgacaccagtaataaatggagagcatgtacttattgaacgtaactacatgtatcagtgttgggcagtgagtcagacaccagacatgtagtatatgatt |
117 |
Q |
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| T |
50243698 |
gttgacaccagtaataaatggagagcatgtacttattgaacgtaactacatgtatcagtgttgggcagtgagtcagacaccagacatgtagtatatgatt |
50243797 |
T |
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| Q |
118 |
gtattgttgtggggatttgcagggttctgtgcaagttttatgaagctatatcctgcaatgaagagttatgaatatggctttcgcgtgtttttgttaacgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50243798 |
gtattgttgtggggatttgcagggttctgtgcaagttttatgaagctatatcctgcaatgaagagttatgaatatggctttcgcgtgtttttgttaacgt |
50243897 |
T |
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| Q |
218 |
tttgtattgtattggtgtctggaagagatggaaaacagtttttcaccactgctttttatagattggttcttat |
290 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
50243898 |
tttgtattgtattggtgtctggaagagatggaaagcagtttttcaccactgctttttatagattggttcttat |
50243970 |
T |
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