View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18482_low_28 (Length: 295)
Name: NF18482_low_28
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_low_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 1852330 - 1852086
Alignment:
| Q |
9 |
agacaaagttttaccaatcgtacaacaaaccaaatttgatggaaaaatcgcaatgaaagaatagatgagccacgtcctctaaattaccacgnnnnnnnac |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1852330 |
agacaaagttttaccaatcgtacaacaaaccaaatttgatggaaaaatcgcaatgaaagaatagatgagccacgtcctctaaattaccacgtcctcc-ac |
1852232 |
T |
|
| Q |
109 |
acattgttgagaagtatccggaagcacctctctttttaccaaattgttgtttgttggtaatcgattaagaaggaggtgccacacaaaaagattgaccttg |
208 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1852231 |
acattgttgagaagtatccggaagtacctctctttttaccaaattgttgtttgttggtgatcgattaagaaggaggtgccacataaaaagattgaccttg |
1852132 |
T |
|
| Q |
209 |
agagggacatctttatgccaaaatacatgaaaggcatcttcattga |
254 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1852131 |
agagggacatctttatgccaaaacacatgaaaggcatcttcattga |
1852086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 30 - 261
Target Start/End: Original strand, 34384022 - 34384253
Alignment:
| Q |
30 |
acaacaaaccaaatttgatgga-aaaatcgcaatgaaagaatagatgagccacgtcctctaaattaccacgnnnnnnnacacattgttgagaagtatccg |
128 |
Q |
| |
|
|||||||||||||||| | || ||||| ||||||||| ||||||||||| ||| |||||||||||||| |||||||||| ||||||||| | |
|
|
| T |
34384022 |
acaacaaaccaaattttagagagaaaattgcaatgaaaaaatagatgagcagcgttctctaaattaccac-atcccccacacattgttaagaagtatctg |
34384120 |
T |
|
| Q |
129 |
gaagcacctctctttttaccaaattgttgtttgttggtaatcgattaagaaggaggtgccacacaaaaagattgaccttgagagggacatctttatgcca |
228 |
Q |
| |
|
|||||| ||| ||||||||||||| | |||| |||| ||||| ||||| ||| ||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
34384121 |
gaagcagtcttctctttaccaaattgtcgcttgtcggtagacgattgagaagtaggcaccacacaaaaagattgaatttgagagggacatctttgtgcca |
34384220 |
T |
|
| Q |
229 |
aaatacatgaaaggcatcttcattgatatgttg |
261 |
Q |
| |
|
|| | ||| ||| |||||| |||||||||||| |
|
|
| T |
34384221 |
taaaatatggaagtcatcttaattgatatgttg |
34384253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 176 - 280
Target Start/End: Complemental strand, 21081445 - 21081341
Alignment:
| Q |
176 |
agaaggaggtgccacacaaaaagattgaccttgagagggacatctttatgccaaaatacatgaaaggcatcttcattgatatgttgagaagaagtttgtt |
275 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| ||||||||||||||| |||||| ||||| ||| ||||||||||||||| ||| ||||||||||||| |
|
|
| T |
21081445 |
agaaggagacgccacacaaaaagattaaccttgggagggacatctttattccaaaaaacatggaagtcatcttcattgatatattgggaagaagtttgtt |
21081346 |
T |
|
| Q |
276 |
gaaga |
280 |
Q |
| |
|
||||| |
|
|
| T |
21081345 |
gaaga |
21081341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 280
Target Start/End: Original strand, 29537240 - 29537488
Alignment:
| Q |
33 |
acaaaccaaatttgatggaaaaatcgcaatgaaagaatagatgagccacgtcctctaaattaccacgnnnnnnn-acacattgttgagaagtatccggaa |
131 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||||||||| ||||| || |||||||| |||||||||||| ||||||| |||| |
|
|
| T |
29537240 |
acaaaccaaatttgacggaaaaattgcaatgaagaaatagatgagcggtgtcctttagattaccacatcccccccacacattgttgaaaagtatctggaa |
29537339 |
T |
|
| Q |
132 |
gcacctctctttttaccaaattgttgtttgttggtaatcgattaagaaggaggtgccacacaaaaagattgaccttgagagggacatctttatgccaaaa |
231 |
Q |
| |
|
| | | ||| ||||||||||||| |||| ||||||| | || | ||| ||| ||||||||||||| |||| ||||||||||||| ||| | |||||| |
|
|
| T |
29537340 |
gtagccctccgtttaccaaattgtcgtttattggtaagctgttgaaaagaaggcgccacacaaaaagcttgaatttgagagggacatttttgtaccaaaa |
29537439 |
T |
|
| Q |
232 |
tacatgaaaggcatcttcattgatatgttgagaagaagtttgttgaaga |
280 |
Q |
| |
|
||||| | | |||||||||||||| ||| || |||||||| ||||||| |
|
|
| T |
29537440 |
aacatggatgacatcttcattgataagtttagtagaagtttattgaaga |
29537488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 280
Target Start/End: Original strand, 19104297 - 19104401
Alignment:
| Q |
176 |
agaaggaggtgccacacaaaaagattgaccttgagagggacatctttatgccaaaatacatgaaaggcatcttcattgatatgttgagaagaagtttgtt |
275 |
Q |
| |
|
|||||||| |||||||||||| |||||| | | |||||||||||| || ||||| || || ||| |||||||||||||||||||| |||||||||| | |
|
|
| T |
19104297 |
agaaggagacgccacacaaaaaaattgacttcaaaagggacatctttgtgtcaaaaaacctggaagtcatcttcattgatatgttgataagaagtttgat |
19104396 |
T |
|
| Q |
276 |
gaaga |
280 |
Q |
| |
|
||||| |
|
|
| T |
19104397 |
gaaga |
19104401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 45092134 - 45092027
Alignment:
| Q |
107 |
acacattgttgagaagtatccggaagcacctct-ctttttaccaaattgttgtttgttggtaatcgattaagaaggaggtgccacacaaaaagattgacc |
205 |
Q |
| |
|
|||||| ||||||||||| || |||||||| || || |||| |||||||| |||||||||||| ||||| ||||| || | |||||||||||||||| |
|
|
| T |
45092134 |
acacatcgttgagaagtaacctgaagcaccccttctctttatcaaattgtcgtttgttggtaagcgattgagaagatggcactacacaaaaagattgact |
45092035 |
T |
|
| Q |
206 |
ttgagagg |
213 |
Q |
| |
|
|||||||| |
|
|
| T |
45092034 |
ttgagagg |
45092027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 23847555 - 23847499
Alignment:
| Q |
179 |
aggaggtgccacacaaaaagattgaccttgagagggacatctttatgccaaaataca |
235 |
Q |
| |
|
|||||| | ||||||||||||||||| |||||||| ||||||| ||||||||||||| |
|
|
| T |
23847555 |
aggaggcgtcacacaaaaagattgactttgagaggaacatcttgatgccaaaataca |
23847499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 26482838 - 26483066
Alignment:
| Q |
30 |
acaacaaaccaaatttgatgg-aaaaatcgcaatgaaagaatagatgagccacgtcctctaaattaccacgnnnnnnn-acacattgttgagaagtatcc |
127 |
Q |
| |
|
|||||||||||||||||| || |||||| |||| ||| ||||||||||| ||||||||| ||||| || |||||||| |||||||||||| |
|
|
| T |
26482838 |
acaacaaaccaaatttgacggtaaaaattgcaacgaagaaatagatgagcggcgtcctctagattacgacaccacccccacacattgatgagaagtatcc |
26482937 |
T |
|
| Q |
128 |
ggaagcacctctctttttaccaaattgttgtttgttggtaatcgattaagaaggaggtgccacacaaaaagattgaccttgagagggacatctttatgcc |
227 |
Q |
| |
|
| ||| ||| ||| |||| |||||||| |||||||||||| || || |||| |||| ||||||| ||||||||||| |||| || ||||||||| |||| |
|
|
| T |
26482938 |
gaaagtacccatctctttatcaaattgtcgtttgttggtaaacggttgagaaagaggcgccacac-aaaagattgactttgacagagacatctttgtgcc |
26483036 |
T |
|
| Q |
228 |
aaaatacatgaaaggcatcttcattgatat |
257 |
Q |
| |
|
|||| ||||| || |||||||||||||| |
|
|
| T |
26483037 |
aaaaaacatggaaatgatcttcattgatat |
26483066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 204
Target Start/End: Complemental strand, 38596952 - 38596786
Alignment:
| Q |
36 |
aaccaaatttgatggaaaaa-tcgcaatgaaagaatagatgagccacgtcctctaaattaccacgnnnnnnnacacattgttgagaagtatccggaagca |
134 |
Q |
| |
|
|||||||||||| ||||||| | |||||||| |||||||||| ||||||||| |||||||| |||||||||| ||||||| ||||||||| |
|
|
| T |
38596952 |
aaccaaatttgacggaaaaagttgcaatgaagaaatagatgagttgcgtcctctagattaccac---atcccacacattgtttagaagtaaccggaagca |
38596856 |
T |
|
| Q |
135 |
cctctctttttaccaaattgttgtttgttggtaatcgattaagaaggaggtgccacacaaaaagattgac |
204 |
Q |
| |
|
|| |||| ||||||||||||| ||||||||||| || || ||||| ||| ||||||| ||||||||||| |
|
|
| T |
38596855 |
cccctctctttaccaaattgtcatttgttggtaagcggttgagaagaaggcgccacacgaaaagattgac |
38596786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 29 - 272
Target Start/End: Complemental strand, 134051 - 133807
Alignment:
| Q |
29 |
tacaacaaaccaaatttgatggaaaaa-tcgcaatgaaagaatagatgagccacgtcctctaaattaccacgnnnnnnnacacattgttgagaagtatcc |
127 |
Q |
| |
|
|||||| |||||||||||| ||||||| | |||||||| |||||||||| ||||||| |||||||| |||||| ||||||||||| | |
|
|
| T |
134051 |
tacaactaaccaaatttgacggaaaaagttgcaatgaagaaatagatgagtagtatcctctagattaccacatccccccacacatcgttgagaagtaact |
133952 |
T |
|
| Q |
128 |
ggaagcacctctctttttaccaaattgttgtttgttggtaatcgattaagaaggaggtgccacacaaaaagattgaccttgagagggacatctttatgcc |
227 |
Q |
| |
|
|||||| || |||| ||||||||||||| ||||||||||| || || ||||| ||| ||||||| |||||||| || || ||||| |||||| | |||| |
|
|
| T |
133951 |
ggaagcgcccctctctttaccaaattgtcatttgttggtaagcggttgagaagaaggcgccacacgaaaagattaactttcagaggtacatctgtgtgcc |
133852 |
T |
|
| Q |
228 |
aaaatacatgaaaggcatcttcattgatatgttgagaagaagttt |
272 |
Q |
| |
|
|| | ||||| | | ||| ||||||||||||||| |||||||| |
|
|
| T |
133851 |
aagaaacatggatgtcattggcattgatatgttgagtagaagttt |
133807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 30704970 - 30704921
Alignment:
| Q |
188 |
cacacaaaaagattgaccttgagagggacatctttatgccaaaatacatg |
237 |
Q |
| |
|
||||||||||||||||| || |||| ||| ||||||||||||||||||| |
|
|
| T |
30704970 |
cacacaaaaagattgactttcagagaaacaactttatgccaaaatacatg |
30704921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University