View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18482_low_29 (Length: 293)
Name: NF18482_low_29
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 43141817 - 43142093
Alignment:
| Q |
1 |
cacagatttgacatccataattcttgcattgagatatcatgatatacttgcaacacaagaaacattgtaggaatagggaaatctacattgtgtttcctta |
100 |
Q |
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| T |
43141817 |
cacagatttgacatccataattcttgcattgagatatcatgatatacttgcaacacaagaaacattgtaggaatagggaaatctacattgtgtttcctta |
43141916 |
T |
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| Q |
101 |
aatattgctttgtattccttggcttttgttgtttttagagaaatatccatgatacataatcataaatctgaatattttgtttgctctgcagggatatttt |
200 |
Q |
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| T |
43141917 |
aatattgctttgtattccttggcttttgttgtttttagagaaatat-catgatacataatcataaatctgaatattttgtttgctctgcagggatatttt |
43142015 |
T |
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| Q |
201 |
atttgcttaacacttgctcttgggtatgcttttgcttc-tattttaggtactcattacttaataatgaatgtcataga |
277 |
Q |
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| T |
43142016 |
atttgcttaacacttgctcttgggtatgctcttgcttcttattttaggtactcattacttaataatgaatgtcataga |
43142093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 256
Target Start/End: Original strand, 43153551 - 43153670
Alignment:
| Q |
137 |
agagaaatatccatgatacataatcataaatctgaatattttgtttgctctgcagggatattttatttgcttaacacttgctcttgggtatgcttttgct |
236 |
Q |
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| T |
43153551 |
agagaaatatc-atggtaaataataataaatctgaatgttatgtttactttgcagggatgtttcatttgcttaacacttgctcttgggtgggctcttgct |
43153649 |
T |
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| Q |
237 |
tc-tattttaggtactcatta |
256 |
Q |
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|| ||| |||||||||||||| |
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| T |
43153650 |
tcttatgttaggtactcatta |
43153670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 43153311 - 43153348
Alignment:
| Q |
42 |
atatacttgcaacacaagaaacattgtaggaataggga |
79 |
Q |
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| T |
43153311 |
atatacttgcaacacaagaaacactgtagggataggga |
43153348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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