View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18482_low_31 (Length: 279)
Name: NF18482_low_31
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_low_31 |
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| [»] chr8 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 33776539 - 33776261
Alignment:
| Q |
1 |
gttgagtattgggctggactaccaactgggcctgggttttaatttgttttgtttgttacttaatatatggtccgaaaatgtggtttgatggctggaaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
33776539 |
gttgagtattgggctggactaccaactgggcctgggttttaatttgttttgtttgttacttaatatgtggtccgaaaatgaggtttgatggctggaaatc |
33776440 |
T |
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| Q |
101 |
catcaattcaaaatttatatgatcaaaatgaataaaaatgagattttttaatttcaaatgtagttttctgatccacattgctaattttgatcattttttg |
200 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33776439 |
cagcaattcaaaatttatataatcaaaatgaataaaaatgagaatttttaatttcaaatgtagttttctgatccacattgctaattttgatcattttttg |
33776340 |
T |
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| Q |
201 |
tacttgaacattttgctgatttggcattagggggttgagagattgacaccttggattaggatgccaaaaaatgtagctc |
279 |
Q |
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| T |
33776339 |
tacttgaacattttgctgatttggcattagggggttgagagattgacaccttggattaggatgccaaaaaatgtagctc |
33776261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 6799572 - 6799521
Alignment:
| Q |
225 |
cattagggggttgagagattgacaccttggattaggatgccaaaaaatgtag |
276 |
Q |
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| T |
6799572 |
cattagggggttgagagattgacacattgtattgggatgctaaaaaatgtag |
6799521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 6799736 - 6799677
Alignment:
| Q |
217 |
tgatttggcattagggggttgagagattgacaccttggattaggatgccaaaaaatgtag |
276 |
Q |
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| T |
6799736 |
tgatgtggcattagggggttgagagattgacacatggtattgggatgttaaaaaatgtag |
6799677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 1569817 - 1570095
Alignment:
| Q |
1 |
gttgagtattgggctggactaccaactgggcctgggttttaatttgttttgtttgttacttaatatatggtccgaaaatgtggtttgatggctggaaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
1569817 |
gttgagtattgggctggactaccaactgggcctgggttttaatttgttttgtttgttacttaatatgtggtccgaaaatgaggtttgatggctggaaatc |
1569916 |
T |
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| Q |
101 |
catcaattcaaaatttatatgatcaaaatgaataaaaatgagattttttaatttcaaatgtagttttctgatccacattgctaattttgatcattttttg |
200 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1569917 |
cagcaattcaaaatttatataatcaaaatgaataaaaatgagaatttttaatttcaaatgtagttttctgatccacattgctaattttgatcattttttg |
1570016 |
T |
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| Q |
201 |
tacttgaacattttgctgatttggcattagggggttgagagattgacaccttggattaggatgccaaaaaatgtagctc |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1570017 |
tacttgaacattttgctgatttggcattagggggttgagagattgacaccttggattaggatgccaaaaaatgtagctc |
1570095 |
T |
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