View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18482_low_44 (Length: 201)
Name: NF18482_low_44
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 19457278 - 19457409
Alignment:
| Q |
14 |
cagatgaaaaactaacattgaattctaaaataagctggattggaacttgctaagattttttggatagtgcctctcaaagataatcaatgatctacattaa |
113 |
Q |
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| T |
19457278 |
cagatgaaaaactaacattgaattctaaaataagctggattggaacttgctaagattttttggatagtgcctctcaaagataatcaatgatctaaattaa |
19457377 |
T |
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| Q |
114 |
cctacattgatggtacgagtacaatcttaaat |
145 |
Q |
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| T |
19457378 |
cctacattgatggtacgagtacaatcttaaat |
19457409 |
T |
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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 19458195 - 19458238
Alignment:
| Q |
142 |
aaatctgtattgtccataatgaagtatttgcccctaccattttc |
185 |
Q |
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| T |
19458195 |
aaatctgtattgtccataatgaagtttttgcccctaccattttc |
19458238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 8461722 - 8461799
Alignment:
| Q |
20 |
aaaaactaacattg-aattctaaaataagctggattggaacttgctaaga-ttttttggatagtgcctctcaaagataat |
97 |
Q |
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| T |
8461722 |
aaaaactaatattgcaattctaaaataagctggattggaacttgctaagatttttttggatagt--ctctcaaagataat |
8461799 |
T |
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