View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18482_low_5 (Length: 591)
Name: NF18482_low_5
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 67 - 573
Target Start/End: Original strand, 14011046 - 14011552
Alignment:
| Q |
67 |
tagaaatgaggtttctattttaccttcaatttatggctttgattctagccatgctttgtttatgaataaacaaaaagaaagaaccccacaaagaggccaa |
166 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| |
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| T |
14011046 |
tagaaatcaggtttctattttaccttcaatttatggctttgattctagccatgctttgtttatgaataaacaaaaagaaagaactcaacaaataggccaa |
14011145 |
T |
|
| Q |
167 |
gagataattcaacgctaagcataaaatccaacggagcaattcacctaacataaggaaaactaatacaatgtgcatacctgattcatggctaacacttgcc |
266 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14011146 |
gagataattcaacgctaagcataaaattcaacggagcaattcacctaacataaggaaaactaatacaatgtgcatacctgattcatggctaacacttgcc |
14011245 |
T |
|
| Q |
267 |
cattgcttttctttcacatatttcaattttctcaagaaatacctgcaacagttaattgcaaaagaagcttgttatatatacattttcatatttaatacac |
366 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14011246 |
cattgcttttctttcacatttttcaattttctcaagaaatatctgcaacagttaattgcaaaagaagcttgttatatatacattttcatatttaatacac |
14011345 |
T |
|
| Q |
367 |
taattcaaagcagaaggtgctaagtcgttttcataaaataataaactaaacttacaatttccatgcaaatggcaatttaatctacgcccaagtgtatagt |
466 |
Q |
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| T |
14011346 |
taattcaaagcagaaggtgctaaatcgttttcataaaataataaactaaacttacaatttccatgcaaatggcaatttaatctacgcccaagtgtatagt |
14011445 |
T |
|
| Q |
467 |
atccatatggctataacattcaccactggttgtaaagaactctaagcaaacccagcagatatgttttccacatttgcactcaatgtgattgcacccatct |
566 |
Q |
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| T |
14011446 |
atccatatggctataacattcaccactggttgtaaagaactctaagcaaacccagcagatatgttttccacatttgcactcaatgtgattgcacccatct |
14011545 |
T |
|
| Q |
567 |
accttct |
573 |
Q |
| |
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||||||| |
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| T |
14011546 |
accttct |
14011552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 14010952 - 14011019
Alignment:
| Q |
1 |
aacacaagcaaaccatcaaaagaaggttcctaaagtatctttagttttcggtttgttcgttaacaata |
68 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14010952 |
aacacaagcaaaccatcaaaagaaggttcctaaagtatctttagttttcggtttgttcgttaacaata |
14011019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 433 - 573
Target Start/End: Complemental strand, 3882515 - 3882375
Alignment:
| Q |
433 |
aaatggcaatttaatctacgcccaagtgtatagtatccatatggctataacattcaccactggttgtaaagaactctaagcaaacccagcagatatgttt |
532 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
3882515 |
aaatggcaatttaatctacgcccaagtgtatagtatccatatggctataacattcaccgctggttgtaaagaactctaagcaaacccagcaaatatgttt |
3882416 |
T |
|
| Q |
533 |
tccacatttgcactcaatgtgattgcacccatctaccttct |
573 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| |
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| T |
3882415 |
tccacacttgcactcaatgtgattgcacccatctaccttct |
3882375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 67 - 236
Target Start/End: Complemental strand, 3882921 - 3882763
Alignment:
| Q |
67 |
tagaaatgaggtttctattttaccttcaatttatggctttgattctagccatgctttgtttatgaataaacaaaaagaaagaaccccacaaagaggccaa |
166 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3882921 |
tagaaatgaggtttctattttaccttcaatttatggctttgattctagccatgctttgtttatgaataaacaaaaagaaagaaccccacaaagaggcca- |
3882823 |
T |
|
| Q |
167 |
gagataattcaacgctaagcataaaatccaacggagcaattcacctaacataaggaaaactaatacaatg |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
3882822 |
----------aacgctaagcataaaatccaacggagcaattcacctaacaaaaggaaaactaatacaatg |
3882763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 231 - 362
Target Start/End: Complemental strand, 3882689 - 3882558
Alignment:
| Q |
231 |
acaatgtgcatacctgattcatggctaacacttgcccattgcttttctttcacatatttcaattttctcaagaaatacctgcaacagttaattgcaaaag |
330 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3882689 |
acaatgtgcatacctgattcatggctaacacttgcccattgcttttctttcacatatttcaattttctcaagaaatacctgcaacagttaattgcaaaag |
3882590 |
T |
|
| Q |
331 |
aagcttgttatatatacattttcatatttaat |
362 |
Q |
| |
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||||||| ||||||| | |||||||||||||| |
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| T |
3882589 |
aagcttggtatatatgctttttcatatttaat |
3882558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 3883015 - 3882948
Alignment:
| Q |
1 |
aacacaagcaaaccatcaaaagaaggttcctaaagtatctttagttttcggtttgttcgttaacaata |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3883015 |
aacacaagcaaaccatcaaaagaaggttcctaaagtatctttagttttcggtttgtttgttaacaata |
3882948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 479 - 573
Target Start/End: Original strand, 39316923 - 39317017
Alignment:
| Q |
479 |
ataacattcaccactggttgtaaagaactctaagcaaacccagcagatatgttttccacatttgcactcaatgtgattgcacccatctaccttct |
573 |
Q |
| |
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|||||||||| |||| ||||||||| ||| |||||||||||||||| ||||||||| || |||||||||| ||||||||||||||||| ||||| |
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| T |
39316923 |
ataacattcatcactacttgtaaagatctccaagcaaacccagcagacatgttttccgcacttgcactcaacgtgattgcacccatctatcttct |
39317017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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