View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18482_low_6 (Length: 577)
Name: NF18482_low_6
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Original strand, 41010747 - 41011162
Alignment:
| Q |
13 |
atcataaaatattgtagtagct--atacatttccaacgctagtcctttagacttgtcaaatgtcaaagcttattcaattcgctacatttccaattatgta |
110 |
Q |
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| T |
41010747 |
atcataaaatattgtagtagctctatacatttccaacgctagtcctttagacttgtcaaatgtcaaagcttattcaattcactacatttccaattatgta |
41010846 |
T |
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| Q |
111 |
ttatcttatcgccttgtggatttagttaaaaagatcatggaaagtttagataatacataattccaaacatttcgctacacgtcattcgcgtatacttcgt |
210 |
Q |
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| T |
41010847 |
ttatcttatcgccttgtggatttagttaaaaagatcatggaaagtttagataatacataattccaaacatttcgctacacgtcattcgcgtatacttcgt |
41010946 |
T |
|
| Q |
211 |
gatgaatatgtttgcgagattaagcatttgccgaatcaaattgttacgctagctagttcgttaattttacatagattacctgtgggaaaaaagtttcaat |
310 |
Q |
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| T |
41010947 |
gatgaatatgtttgcgagattaagcatttgccgaatcaaa---------tagctaattcgttaattttacatagattacctgtgggaaaaaagtttcaat |
41011037 |
T |
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| Q |
311 |
tttaaatacaaacatttcgacaaaaggtataca----aaaggccaaaacatattgattaattcaatagagttcatggaattcacaaagtattaaaatgcc |
406 |
Q |
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| T |
41011038 |
tttaaatacaaacatttcgacaaaaggtatacaaaagaaaggccaaaacatattgattaattcaatagagttcatggaattcacaaagtattaaaatgcc |
41011137 |
T |
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| Q |
407 |
tagagatcacacaaaaggaattgta |
431 |
Q |
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| T |
41011138 |
tagagatcacacaaaagaaattgta |
41011162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 435 - 561
Target Start/End: Original strand, 41011442 - 41011568
Alignment:
| Q |
435 |
aaattcctccaacattggacaactgtagacaagtgaatatcaccgcaatctggtgaagagctttgagtcgatggaggtgtgcactaaaaggaagacaatc |
534 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41011442 |
aaattcctccaacattggacaactgtagacaagtgaatatcaccgcaatctggtgaagagctttgagtcgatggaggtgtgcactaaaaggaagacaatc |
41011541 |
T |
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| Q |
535 |
gagaaccaaactcttcaacttgcatag |
561 |
Q |
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| T |
41011542 |
gagaaccaaactcttgaacttgcatag |
41011568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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