View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18482_low_8 (Length: 535)
Name: NF18482_low_8
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 13 - 520
Target Start/End: Complemental strand, 25181619 - 25181112
Alignment:
| Q |
13 |
atactaaattattgcagttcgaatcgcaa-catctatttatttaccgttaatttctaacgaatatgttacttgnnnnnnnnnttaattaatcaatttaag |
111 |
Q |
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| T |
25181619 |
atactaaattattgtagttcgaattgcaaacatctatttatttaccgtaaatttctaacgaatatgttacttgaaaaaaaaattaattaatcaatttaag |
25181520 |
T |
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| Q |
112 |
ttagggagtccaattaaataacgagtcatagatattatcnnnnnnnntaatgactcatacaatacaaggaaccgcgtgttgaaatttaatttgactagaa |
211 |
Q |
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| T |
25181519 |
ttagggagtccaattaaataacgagtcatagatattatcaaaaaaaataatgactcatacaatacaaggaaccgcgtgttgaaatttaatttgactagaa |
25181420 |
T |
|
| Q |
212 |
aaatgtgcaatagaagcctgccaccaaaaaattttctttcttatataagaagcaacgctcgcttgcattgtttacctaacccagaaaagcaattataaaa |
311 |
Q |
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| T |
25181419 |
aaatgtgcaatagaagcctgccaccaaaat-ttttctttcttatataagaagcaacgctcgcttgcattgtttacctaacccacaaaagcaattataaaa |
25181321 |
T |
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| Q |
312 |
taagcacttatgacattaaacatgagatatctcctattttctctcttgttatccttagtttcaacattcatcattacagaaggtaaagaaataattaaca |
411 |
Q |
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| T |
25181320 |
taagcacttatgacattaaacatgagatatctcctattttctctcttgttatccttagtttcaacattcatcattacagaaggtaaagaaataattaaca |
25181221 |
T |
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| Q |
412 |
ctgcaccattgcaaataggttcattaaatagaaatgatttcccagaaggctttatatttggcacagcatcttctgcatatcaatatgaaggtgcagcaag |
511 |
Q |
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| T |
25181220 |
ctgcaccattgcaaataggttcattaaatagaaatgatttcccagaaggctttatatttggcacagcatcttctgcatatcaatatgaaggtgcagcaag |
25181121 |
T |
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| Q |
512 |
tgaaggtgg |
520 |
Q |
| |
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||||||||| |
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| T |
25181120 |
tgaaggtgg |
25181112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 423 - 520
Target Start/End: Complemental strand, 25169421 - 25169324
Alignment:
| Q |
423 |
caaataggttcattaaatagaaatgatttcccagaaggctttatatttggcacagcatcttctgcatatcaatatgaaggtgcagcaagtgaaggtgg |
520 |
Q |
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||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25169421 |
caaataggtactttgaatagaaatgatttcccagaaggctttatatttggcacagcatcttctgcatatcaatatgaaggtgcagcaagtgaaggtgg |
25169324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 397 - 520
Target Start/End: Original strand, 25251807 - 25251930
Alignment:
| Q |
397 |
aagaaataattaacactgcaccattgcaaataggttcattaaatagaaatgatttcccagaaggctttatatttggcacagcatcttctgcatatcaata |
496 |
Q |
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||||||||||||| ||| | ||| ||| |||||||||| ||||| || ||||| || |||||||| || ||||||||||||||||||||||||||||| |
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| T |
25251807 |
aagaaataattaatactactccaccacaagtaggttcattgaataggaaagattttcctgaaggcttcatctttggcacagcatcttctgcatatcaata |
25251906 |
T |
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| Q |
497 |
tgaaggtgcagcaagtgaaggtgg |
520 |
Q |
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|||||||||||||||||||||||| |
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| T |
25251907 |
tgaaggtgcagcaagtgaaggtgg |
25251930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 25251738 - 25251771
Alignment:
| Q |
325 |
cattaaacatgagatatctcctattttctctctt |
358 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
25251738 |
cattaaacatgagatatttcctattttctctctt |
25251771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 361
Target Start/End: Complemental strand, 25169513 - 25169477
Alignment:
| Q |
325 |
cattaaacatgagatatctcctattttctctcttgtt |
361 |
Q |
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|||||| |||||||||| ||||||||||||||||||| |
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| T |
25169513 |
cattaagcatgagatatttcctattttctctcttgtt |
25169477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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