View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18483_low_1 (Length: 735)
Name: NF18483_low_1
Description: NF18483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18483_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 424
Target Start/End: Complemental strand, 2634027 - 2633644
Alignment:
| Q |
16 |
atatatcaatggtatcttgacatagaatgctgaaatcacatgagtggtaaaattaaaggtcttgtttatcgatcttaatcaaatagtcaagagaagaatt |
115 |
Q |
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| T |
2634027 |
atatatcaatggtatcttgacatagaatgctgaaatcacatgagtggtaaaa-----ggtcttgtttatcgatcttaatcaaatagtcaagaga------ |
2633939 |
T |
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| Q |
116 |
agatttgcagatgatataatagtgttgtaaatgcaaaatgtaataataaagtgataattcaaataaagaagggcaaagaatcccacatctcagaggtgtt |
215 |
Q |
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| T |
2633938 |
--------------tataatagtgttgtaaatgcaaaatgtaataataaagtgatgattcaaataaagaagggcaaagaatcctacatctcagaggtgtt |
2633853 |
T |
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| Q |
216 |
gtatatcccaaaaatgaagagtaacttcattagccttggtcaattgttgaaaaagggctaacactatgaagatggaaaaggaagactaatcttgtaggaa |
315 |
Q |
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| T |
2633852 |
gtatatcccaaaaatgaagagtaacttcattagccttggtcaattgttgaaaaagggctaacactatgaagatggaaaaggaagactaatcttgtaggaa |
2633753 |
T |
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| Q |
316 |
ggaaccattctcaatacaaagaactttcaaaattggaatcaatgcttgatggcaggtaaaagtgatgaaaaatggattttacatcataggtttacgaatt |
415 |
Q |
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| T |
2633752 |
ggaaccattctcaatacaaagaactttcaaaattggaatcaatgcttgatggcaggtaaaagtgatgagaaatggattttgcatcaaaggtttacgaatt |
2633653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 448 - 735
Target Start/End: Complemental strand, 2633644 - 2633357
Alignment:
| Q |
448 |
aaattccaatacctcttttagttgggattcgaatttcgaacattggcacactttattattataggagcctaacatctagtgctacattgacaacaatcat |
547 |
Q |
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| T |
2633644 |
aaattccaatacctcttttagttgggattcaaatttcgaacattggcacactttattattataggagcctaacatctagtgctacattcacaacaatcat |
2633545 |
T |
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| Q |
548 |
ataacaaaattgatgcataacatcaaccaaagttatctttgacatctttgtttcgtatgtaatatatatatacacagaagaagaaaacacctcatcctta |
647 |
Q |
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| T |
2633544 |
ataacaaaattgatacataacatcaaccaaagttatctttgacatctttgtttcgtatgtaatatatatatacacagaagaagaaaacacctcatcctta |
2633445 |
T |
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| Q |
648 |
agtctgagtagttacaaactatgcatcttgcatgtgatgtggtaggaacgttgtgcgacacaaaggacatgtagtgtgatcatatccc |
735 |
Q |
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| T |
2633444 |
agtctgagtagttacaaactatgcatctagcatgtgatgtggtaggaacgttgtgcgacacaaaggacatgtagtgtgatcatatccc |
2633357 |
T |
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