View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18483_low_2 (Length: 374)
Name: NF18483_low_2
Description: NF18483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18483_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 374
Target Start/End: Original strand, 41094014 - 41094373
Alignment:
| Q |
15 |
caaaggaacggaaagaattgtgatccgaagctaaggtaattcaactatggagtctctagactcgtttgaggaagagcagtcacatcatcaatctccaacc |
114 |
Q |
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| T |
41094014 |
caaaggaacagaaagaattgtgatccgaagctaaggtaattcaactatggagtctctagactcgtttgaggaagagcagtcacatcatcaatctccaacc |
41094113 |
T |
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| Q |
115 |
actggtggaggaggaggagtagtagtaggaggaccttttgaagatgacaataatagtaactatgaaggattcaattctcaacagcagtttgattatggat |
214 |
Q |
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| T |
41094114 |
actggtggaggaggaggagtagtagtaggaggaccttttgaagatgacaacaatagtaactatgaaggattcaattctcaacagcagtttgattatggat |
41094213 |
T |
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| Q |
215 |
ccacattccatcctccaaataatcccgacgacgatcacctcaccgttgacaccagcaacaacatcaacaatgaccaacactctcctcccggatatggatt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41094214 |
ccacattccatcctccaaataatcccgacgacgatcacctcaccgttgacaccagcaacaacatcaacaatgaccaacattctcctcccggatatggatt |
41094313 |
T |
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| Q |
315 |
cggagtttcaagccctaaccctaaccctgatttcgttactccgtttcaaaccaatgaaac |
374 |
Q |
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| T |
41094314 |
cggagtttcaagccctaaccctaaccctgatttcgttactccgtttcaaaccaatgaaac |
41094373 |
T |
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