View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18484_high_1 (Length: 722)
Name: NF18484_high_1
Description: NF18484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18484_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 677; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 8 - 704
Target Start/End: Original strand, 26715829 - 26716525
Alignment:
| Q |
8 |
tgagaagaaagatcaaattaatgctgccgaaaagtgtattaataagttgaaagaggagtttcaaacagaaatgaatgatgatttgcagacacatgtaata |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26715829 |
tgagaagaaagatcaaattaatgctgccgaaaagtgtattaataagttgaaagaggagtttcaaacagaaatgaatgatgatttgcagacacatgtaata |
26715928 |
T |
|
| Q |
108 |
ctaaaaggtgctctcctagaggccttgaaattcatgaacagatctttgcaattcaaacaatccctattgaaagtagagcaagaagttagagaagttttga |
207 |
Q |
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| T |
26715929 |
ctaaaaggtgctctcctagaggccttgaaattcatgaacagatctttgcaattcaaacaatccctattgaaagtagagcaagaagttagagaagttttga |
26716028 |
T |
|
| Q |
208 |
aagtactaggattattgtcctctttgtcctatgccgaggtaacacgttttacttaagtgaacttgtctgttgtgcatttaatctttacagatgcctatat |
307 |
Q |
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| T |
26716029 |
aagtactaggattattgtcctctttgtcctatgccgaggtaacacgttttacttaagtgaacttgtctgttgtgcatttaatctttacagatgcctatac |
26716128 |
T |
|
| Q |
308 |
ttttggaaagccatcacgaaaaggaaggatgataatttttattggtgcatcaggttctgcagcagttgaaagataaggcgttgaagagagcaggtttgac |
407 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26716129 |
tttcggaaagccatcacgaaaaggaaggatgataatttttattggtgcatcaggttctgcagcagttgaaagataaggcgttgaagagagcaggtttgac |
26716228 |
T |
|
| Q |
408 |
ggaaaaggaagtgctaaaactgattgaagaaagaaagcaagctagaattaataaggattttgctaagagcgataatattagaactgatctaactgcaaag |
507 |
Q |
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| T |
26716229 |
ggaaaaggaagtgctaaaactgattgaagaaagaaagcaagctaggattaataaggattttgctaagagcgataatattagaactgatctaactgcaaag |
26716328 |
T |
|
| Q |
508 |
ggcattgcacttgaggatgtcgaaaatgaaatgatttggaggccatgcatcccgagtaaaccacttgttgcacaagctgtttcgacagacaacaaggtac |
607 |
Q |
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| T |
26716329 |
ggcattgcacttgaggatgtcgacaatgaaatgatttggaggccatgcatcccgagtaaaccacttgttgcacaagctgtttcgacagacaacaaggtac |
26716428 |
T |
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| Q |
608 |
ctgaagtagaagaaaagctatcaacacttgcggtgagtcaaaaggtagaggaaatacctgctgatcaagaagggaagggatcgcatgcatcatcatc |
704 |
Q |
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| T |
26716429 |
ctgaagtagaagaaaagctatcaacacttgcggtgagtcaaaaggtagaggaaatacctgctgatcgagaagggaagggatcgcatgcatcatcatc |
26716525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 165 - 702
Target Start/End: Complemental strand, 49793721 - 49793181
Alignment:
| Q |
165 |
caatccctattgaaagtagagcaagaagttagagaagttttgaaagtactaggattattgtcctctttgtcctatgccgaggtaacacgttttacttaag |
264 |
Q |
| |
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|||||| ||||| |||| ||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49793721 |
caatccttattggaagttgagaaagaagctagagaaattttgaaagtactaggattactgtcctctttgtcctatgctgaggtaacacgttttacttaag |
49793622 |
T |
|
| Q |
265 |
tgaacttgtctgttgtgcatttaatctttacagatgcctatatttttggaaagccatcacgaaaaggaaggat--gataatttttattggtgcatcaggt |
362 |
Q |
| |
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|||||||||||||||| ||||||||||||| |||| ||||| ||| |||||| |||||| || ||||||||| | |||||||||| |||||||||||| |
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| T |
49793621 |
tgaacttgtctgttgttcatttaatctttagagattcctattctttcggaaaggcatcacaaagaggaaggatatgctaatttttatcggtgcatcaggt |
49793522 |
T |
|
| Q |
363 |
tctgcagcagttgaaagataaggcgttgaagagagcaggtttgacggaaaaggaagtgctaaaactgattgaagaaagaaagcaagctagaattaataag |
462 |
Q |
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| T |
49793521 |
tctgcagcaattgaaagataaggcgttgaagagagcaggtttgacagaagttgaagtgctaaaatcgatagaagaaagaaggcaagctaggattaataag |
49793422 |
T |
|
| Q |
463 |
gattttgctaagagcgataatattagaactgatctaactgcaaagggcattgcacttgaggatgtcgaaaatgaaatgatttggaggccatgcatcccga |
562 |
Q |
| |
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|||||||| |||||||| || ||||||||||||||||||||||||| ||||||||| |||||||| || |||| |||||||||||||||||||| | |
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| T |
49793421 |
gattttgccaagagcgacaacgttagaactgatctaactgcaaagggtattgcacttatggatgtcggcaacgaaacaatttggaggccatgcatcccaa |
49793322 |
T |
|
| Q |
563 |
gtaaaccacttgttgcacaagctgtttcgacagacaacaaggtacctgaagtagaagaaaagctatcaacacttgcggtgagtcaaaaggtagaggaaat |
662 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49793321 |
gtgaaccacttgttgcacaagctgtttcgacagacaacaatgcacccaaagtagaagaaaagctatcaacacttgcggtgagtcaaaaggtggaggaaat |
49793222 |
T |
|
| Q |
663 |
acct-gctgatcaagaagggaagggatcgcatgcatcatca |
702 |
Q |
| |
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||| || ||| |||||||| ||||| |||||||||||| |
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| T |
49793221 |
accccgcaaatcgtgaagggaatggatcacatgcatcatca |
49793181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 49793962 - 49793835
Alignment:
| Q |
28 |
atgctgccgaaaagtgtattaataagttgaaagaggagtttcaaacagaaatgaatgatgatttgcagacacatgtaatactaaaaggtgctctcctaga |
127 |
Q |
| |
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|||||||| || |||||||||| ||||||||||| |||||||||||| ||||| |||||||||||||||| |||||||||| |||||||||| ||| |
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| T |
49793962 |
atgctgccaaagagtgtattaagaagttgaaagacgagtttcaaacaaaaatgtcagatgatttgcagacaccagtaatactaaccggtgctctccaaga |
49793863 |
T |
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| Q |
128 |
ggccttgaaattcatgaacagatctttg |
155 |
Q |
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||||||||||||||||||| | |||||| |
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| T |
49793862 |
ggccttgaaattcatgaacggttctttg |
49793835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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