View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18484_high_12 (Length: 305)
Name: NF18484_high_12
Description: NF18484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18484_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 3112091 - 3111809
Alignment:
| Q |
16 |
gttccaactttcagaagttggaggagtcaacttcgatacaatcctatgataccggtgttgataacttaaccattccttccgcatagggtaatttggacag |
115 |
Q |
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| T |
3112091 |
gttccaactttcagaagttggaggagtcaacttcgatacaatcctatgataccggtgttgataacttaaccattccttccgcatagggtaatttggacag |
3111992 |
T |
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| Q |
116 |
ccaagaacaccaagcactacttctccatcctctacgagcgctagagctacagcatattgatcgccacgaacaaacccgagtgtgccatcaacaggatcta |
215 |
Q |
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| T |
3111991 |
ccaagaacaccaagcactacttctccatcctctacgagcgctagagctacagcatattgatcgccacgaacaaacccgagtgtgccatcaacaggatcta |
3111892 |
T |
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| Q |
216 |
gtacccaaaatcttccagatggaccaccggttgagttgcagcgacttataatatcgagaacttctgaatttccaagtgatgat |
298 |
Q |
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| T |
3111891 |
gtacccaaaatcttccagatggaccaccggttgagttgcagcgacttataatatcgagaacttctgaatttccaagtggtgat |
3111809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 35893935 - 35894209
Alignment:
| Q |
17 |
ttccaactttcagaagttggaggagtcaacttcgatacaatcctatgataccggtgttgataacttaaccattccttccgcatagggtaatttggacagc |
116 |
Q |
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| T |
35893935 |
ttccaagtttcagatgttggaggaatcaacttggacatgatcctatgataactttgctgataaccaagccagtcctttctcatagggtagttaggacacc |
35894034 |
T |
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| Q |
117 |
caagaacaccaagcactacttctccatcctctacgagcgctagagctacagcatattgatcgccacgaacaaacccgagtgtgccatcaacaggatctag |
216 |
Q |
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| T |
35894035 |
caagaacaccaaccaccacttctccatcctctacgagtgataaagctacagcatattgatcaccatttacaaatcccaatttaccatcaagaggacttag |
35894134 |
T |
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| Q |
217 |
tacccaaaatcttccagatggaccaccggttgagttgcagcgacttataatatcgagaacttctgaatttccaag |
291 |
Q |
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| T |
35894135 |
tgcccaaaatcttcccgaatgacccccaactgagttgcagtgactaatgatttcaagaacctctgaagttccaag |
35894209 |
T |
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