View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18484_high_14 (Length: 285)

Name: NF18484_high_14
Description: NF18484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18484_high_14
NF18484_high_14
[»] chr2 (1 HSPs)
chr2 (77-269)||(9142280-9142470)
[»] chr4 (2 HSPs)
chr4 (216-256)||(50743708-50743748)
chr4 (216-267)||(55678896-55678947)
[»] chr8 (1 HSPs)
chr8 (226-269)||(3119336-3119379)
[»] chr1 (1 HSPs)
chr1 (216-269)||(33420817-33420869)


Alignment Details
Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 77 - 269
Target Start/End: Complemental strand, 9142470 - 9142280
Alignment:
Q  77 cacaccttgacaaatcatttagcttattgtaccnnnnnnntaaatatcatttagcttaccaaatatatcatatattaggaaatttcctaatctggcttcc 176  Q
    |||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9142470 cacaccttgacaaatcatttagcttattgtaccaaaaaaa-aaatatcatttagcttaccaaatatatcatatattaggaaatttcctaaactggcttcc 9142372  T
Q  177 aatttcgtgctcttttactgagannnnnnnagctttctagttacaaccataaatgacaaaaacacccttaaataaaattttatttccaatttc 269  Q
    |||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9142371 aatttcgtgctcttttaccgaga-ttttttagctttctagttacaaccataaatgacaaaaacacccttaaataaaatttaatttccaatttc 9142280  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 50743708 - 50743748
Alignment:
Q  216 gttacaaccataaatgacaaaaacacccttaaataaaattt 256  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  50743708 gttacacccataaatgacaataacacccttaaataaaattt 50743748  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 55678896 - 55678947
Alignment:
Q  216 gttacaaccataaatgacaaaaacacccttaaataaaattttatttccaatt 267  Q
    |||||| || |||||||||| |||||||||||||||||||| ||| ||||||    
T  55678896 gttacatccctaaatgacaataacacccttaaataaaatttaattcccaatt 55678947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 3119379 - 3119336
Alignment:
Q  226 taaatgacaaaaacacccttaaataaaattttatttccaatttc 269  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||    
T  3119379 taaatgacaaaaacacccttagataaaatttaattcccaatttc 3119336  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 33420817 - 33420869
Alignment:
Q  216 gttacaaccataaatgacaaaaacacccttaaataaaattttatttccaatttc 269  Q
    |||||| ||||||||||||| ||||||||||||| |||||||| |||| |||||    
T  33420817 gttacacccataaatgacaataacacccttaaat-aaattttaattcccatttc 33420869  T

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