View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18484_high_3 (Length: 498)

Name: NF18484_high_3
Description: NF18484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18484_high_3
NF18484_high_3
[»] chr5 (16 HSPs)
chr5 (139-488)||(9834436-9834785)
chr5 (147-459)||(19054096-19054407)
chr5 (139-326)||(9826386-9826573)
chr5 (157-404)||(31598889-31599132)
chr5 (211-434)||(24319424-24319649)
chr5 (286-485)||(20547364-20547563)
chr5 (153-485)||(31213461-31213787)
chr5 (392-488)||(9826287-9826383)
chr5 (17-76)||(9834849-9834908)
chr5 (139-206)||(16783541-16783608)
chr5 (169-296)||(24263211-24263338)
chr5 (17-76)||(9826630-9826689)
chr5 (337-464)||(34489859-34489985)
chr5 (169-219)||(25405210-25405260)
chr5 (351-435)||(24263090-24263174)
chr5 (343-463)||(23771988-23772108)
[»] chr7 (12 HSPs)
chr7 (139-464)||(19202437-19202761)
chr7 (207-446)||(13251625-13251864)
chr7 (221-459)||(39269126-39269364)
chr7 (153-326)||(8315882-8316055)
chr7 (169-444)||(1586541-1586808)
chr7 (207-464)||(20578446-20578689)
chr7 (165-272)||(12389648-12389754)
chr7 (372-485)||(12389503-12389616)
chr7 (343-485)||(6038298-6038441)
chr7 (343-435)||(19155459-19155551)
chr7 (343-435)||(20754858-20754950)
chr7 (355-464)||(8316065-8316173)
[»] chr8 (11 HSPs)
chr8 (139-390)||(25231711-25231962)
chr8 (168-464)||(21320531-21320821)
chr8 (272-485)||(18571472-18571684)
chr8 (226-446)||(24721213-24721431)
chr8 (207-485)||(26828618-26828897)
chr8 (239-430)||(29761731-29761916)
chr8 (331-485)||(17099176-17099329)
chr8 (167-297)||(28857720-28857851)
chr8 (373-464)||(17511890-17511980)
chr8 (344-435)||(21230199-21230290)
chr8 (139-201)||(24721100-24721162)
[»] chr4 (4 HSPs)
chr4 (207-464)||(25097299-25097556)
chr4 (153-464)||(12608907-12609211)
chr4 (170-464)||(13130684-13130972)
chr4 (175-461)||(17109968-17110236)
[»] chr2 (9 HSPs)
chr2 (207-464)||(25923608-25923865)
chr2 (205-446)||(28922507-28922748)
chr2 (207-485)||(25533172-25533434)
chr2 (170-463)||(23008839-23009127)
chr2 (257-464)||(16815755-16815949)
chr2 (257-464)||(16854912-16855106)
chr2 (169-219)||(16815955-16816005)
chr2 (169-219)||(16855112-16855162)
chr2 (343-464)||(22565625-22565746)
[»] chr6 (7 HSPs)
chr6 (207-464)||(21844569-21844827)
chr6 (211-464)||(9870131-9870383)
chr6 (213-485)||(23843572-23843846)
chr6 (168-266)||(15455504-15455602)
chr6 (267-404)||(22570901-22571032)
chr6 (191-254)||(11176537-11176600)
chr6 (172-293)||(22525511-22525632)
[»] chr1 (1 HSPs)
chr1 (147-485)||(18828332-18828662)
[»] chr3 (19 HSPs)
chr3 (229-435)||(34275372-34275578)
chr3 (240-464)||(19913545-19913768)
chr3 (139-463)||(12770029-12770348)
chr3 (172-341)||(19166117-19166285)
chr3 (168-464)||(17142323-17142610)
chr3 (213-446)||(13586571-13586804)
chr3 (207-337)||(8766750-8766880)
chr3 (207-367)||(19578076-19578236)
chr3 (315-485)||(8880396-8880566)
chr3 (215-337)||(8771633-8771755)
chr3 (157-305)||(16227158-16227306)
chr3 (334-464)||(19166318-19166449)
chr3 (247-316)||(8878724-8878793)
chr3 (355-464)||(8146798-8146907)
chr3 (139-201)||(13586840-13586902)
chr3 (344-430)||(20315379-20315464)
chr3 (139-201)||(8766897-8766960)
chr3 (139-201)||(8771780-8771843)
chr3 (344-426)||(20337270-20337351)
[»] scaffold0072 (1 HSPs)
scaffold0072 (169-233)||(39384-39448)


Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 139 - 488
Target Start/End: Complemental strand, 9834785 - 9834436
Alignment:
139 gtcttagttattcattcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttatag 238  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9834785 gtcttagttattcattcaaagcattttaggcggaggctaatttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttatag 9834686  T
239 gatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatata 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
9834685 gatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatatttccaatata 9834586  T
339 tattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctt 438  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9834585 tattatgagtgatccatatgaatgctattattacctgaatgtgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctt 9834486  T
439 tggtacctaaagtctttcaagccacctcgttatacttttattatcctatg 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
9834485 tggtacctaaagtctttcaagccacctcgttatacttttattatcctatg 9834436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 147 - 459
Target Start/End: Complemental strand, 19054407 - 19054096
Alignment:
147 tattcattcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcacca 246  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
19054407 tattcattcaaagcattttaggcggaggctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtacttataggatcacca 19054308  T
247 actctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatga 346  Q
     |||||||  |||||||||||||| |||  | || ||||||| |||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||    
19054307 tctcttttctgaatagcataaccggtgatttacatagccaaacatttccatattcattctaggtagttagatacttaaata-ttccaatatatattatga 19054209  T
347 gtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacct 446  Q
    ||| |||||  ||||||||||||| |||||||||| |   |||| ||| ||||||||| ||| |||||||||||  |||||| |||||||||||||||||    
19054208 gtgttccattagaatgctattattgcttgaatttgcgactgttctttatggacgatcggttaggttatattacatgcgagaccatttttctttggtacct 19054109  T
447 aaagtctttcaag 459  Q
    |||||||||||||    
19054108 aaagtctttcaag 19054096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 139 - 326
Target Start/End: Complemental strand, 9826573 - 9826386
Alignment:
139 gtcttagttattcattcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttatag 238  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9826573 gtcttagttatttatttaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttatag 9826474  T
239 gatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaat 326  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| |||| |||||||||||||||||||||    
9826473 gatcaccaactcttttttgaatagcataaccgatgagattcaaagccaaatattttcatatccattttaggttgttagatacttaaat 9826386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 157 - 404
Target Start/End: Original strand, 31598889 - 31599132
Alignment:
157 aagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttc 256  Q
    ||||||||  |||||| ||||||||||||||||||| |||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||| |    
31598889 aagcatttacggtggatgctagtttacccttacatttaagagcacgatactttctggggcttgctactgatggtacttataggatcaccatctcttttcc 31598988  T
257 gaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttg-ttagatacttaaatacttccaatatatattatgagtgatccat 355  Q
     ||||||| ||| | |||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||     ||||||   |||||    
31598989 aaatagcaaaactggtgagattcagagccaaatattttcatatccattctaggttgtttagatacttaaatacttccaata-----tatgagatttccat 31599083  T
356 atgaatgctattattacttgaatttgtggtcgttccttacggacgatcg 404  Q
    ||||||| |||| || || ||||||| || ||||| |||| ||||||||    
31599084 atgaatgttatttttgctcgaatttgcggccgttctttacagacgatcg 31599132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 211 - 434
Target Start/End: Original strand, 24319424 - 24319649
Alignment:
211 tggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggt 310  Q
    ||||||||| |||| |||||||||||||||||| ||||||||||  |||||||||||||| |||||||||||||||||||||| | ||| ||||||||||    
24319424 tggggcttgctagtaaaggtacttataggatcaacaactcttttctgaatagcataaccggtgagattcagagccaaatattttcttatccattctaggt 24319523  T
311 tgttagatacttaaatacttccaatatat--attatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgatta 408  Q
    |||||||||||||||||||| ||||||||  ||||  |||| | ||||||| ||||||| || | ||||||||| ||||||| |||||||||||||  ||    
24319524 tgttagatacttaaatactttcaatatatagattacaagtgttacatatgagtgctatttttgcatgaatttgttgtcgttctttacggacgatcggcta 24319623  T
409 agttatattacacacgagacaatttt 434  Q
     |||||  |||||||||| |||||||    
24319624 ggttattatacacacgaggcaatttt 24319649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 286 - 485
Target Start/End: Original strand, 20547364 - 20547563
Alignment:
286 aaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggt 385  Q
    |||||| ||||||| |||| ||||||||||||| | |||||| |||||||| ||||||| |||| |||||||||||| |||| || |||||||||| ||     
20547364 aaatatctccatatccattgtaggttgttagatgcataaatatttccaatacatattatcagtgttccatatgaatgttatttttgcttgaatttgcggc 20547463  T
386 cgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacctcgttatacttttattatcct 485  Q
    ||||| ||||||||||||| ||||||||||||||| |||||  |||||| |||||||||||| ||||||||||||||||   ||||| ||||||||||||    
20547464 cgttctttacggacgatcggttaagttatattacaaacgaggaaattttactttggtacctagagtctttcaagccaccctattatatttttattatcct 20547563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 153 - 485
Target Start/End: Complemental strand, 31213787 - 31213461
Alignment:
153 ttcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctt 252  Q
    ||||||||||||  ||||||||||||||||||||| || |||||||||  ||||||| ||||||||| || | ||||||||||||||||||||   ||||    
31213787 ttcaaagcatttatggtggaggctagtttacccttccactcaagagcataatactttatggggcttgctacttaaggtacttataggatcaccgtttctt 31213688  T
253 tttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttg-ttagatacttaaatacttccaatatatattatgagtgat 351  Q
    ||   |||||| ||| || ||||||| ||| |||||||| ||| | | |||||||||||| ||| |||||||||| ||||||      |||||||||| |    
31213687 ttctaaatagcttaatcggtgagatttagaaccaaatatctccgt-ttcattctaggttgtttatatacttaaattcttcca------attatgagtgtt 31213595  T
352 ccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagt 451  Q
    | ||||||||| |||| || |||||||||| ||  |||| |||||||| ||   |||  ||||  ||||||||||||||||||||||||||||||  ||     
31213594 ctatatgaatgttatttttgcttgaatttgcggcagttctttacggaccattcgttagattattatacacacgagacaatttttctttggtaccttgagc 31213495  T
452 ctttcaagccacctcgttatacttttattatcct 485  Q
    |||||||||||||   ||||| ||||| ||||||    
31213494 ctttcaagccacccatttatatttttagtatcct 31213461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 392 - 488
Target Start/End: Complemental strand, 9826383 - 9826287
Alignment:
392 ttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacctcgttatacttttattatcctatg 488  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9826383 ttacggacgatcgattaagttatattacacacgaggaaatttttctttggtacctaaagtctttcaagccacctcgttatacttttattatcctatg 9826287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 9834908 - 9834849
Alignment:
17 aggcacaactatttttattcattgtgcatgttttacatatacatgtattatctaataaaa 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9834908 aggcacaactatttttattcattgtgcatgttttacatatacatgtattatctaataaaa 9834849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 16783541 - 16783608
Alignment:
139 gtcttagttattcattcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatac 206  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
16783541 gtcttaggtattcattcaaagcattttaggcggaggctagtttacccttacattcaagagcacgatac 16783608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 24263338 - 24263211
Alignment:
169 tggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataac 268  Q
    ||||||||| |||||||||||||| ||||||||||||  |  ||| | ||  || |||||||||| ||| |||||||| |||||||  ||||||||||||    
24263338 tggaggctaatttacccttacatttaagagcacgataactattggaggttactactgaaggtactcatatgatcaccatctcttttctgaatagcataac 24263239  T
269 cgatgagattcagagccaaatatttcca 296  Q
    || ||||||| |||||||||||||||||    
24263238 cggtgagatttagagccaaatatttcca 24263211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 9826689 - 9826630
Alignment:
17 aggcacaactatttttattcattgtgcatgttttacatatacatgtattatctaataaaa 76  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
9826689 aggcacaactatttttattcattgaccatgttttacatatacatgtattatctaataaaa 9826630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 337 - 464
Target Start/End: Complemental strand, 34489985 - 34489859
Alignment:
337 tatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttc 436  Q
    ||||||||||||| ||||||||||||||||  ||    ||||||| ||  |||| |||||||||||||||||||||||| |||||||||| | |||||||    
34489985 tatattatgagtgttccatatgaatgctatctttgtccgaatttgcggcagttctttacggacgatcgattaagttataatacacacgaggc-atttttc 34489887  T
437 tttggtacctaaagtctttcaagccacc 464  Q
    ||||||||||  || |||| ||||||||    
34489886 tttggtaccttgagccttttaagccacc 34489859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 25405210 - 25405260
Alignment:
169 tggaggctagtttacccttacattcaagagcacgatactttctggggcttg 219  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||    
25405210 tggaggctagtttacccctacattcaagagcacgatactttttggggcttg 25405260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 435
Target Start/End: Complemental strand, 24263174 - 24263090
Alignment:
351 tccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaattttt 435  Q
    ||||||||||| || || || || ||||||  |||||||| ||||  ||||||  ||||||||||||||||||||||||||||||    
24263174 tccatatgaatactgtttttgctcgaatttacggtcgttctttacatacgatcagttaagttatattacacacgagacaattttt 24263090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 463
Target Start/End: Complemental strand, 23772108 - 23771988
Alignment:
343 atgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggt 442  Q
    ||||||| ||||||||| ||||||| || ||  |||||| |||||||| |||||||||||||  |  || ||| ||  |||||||||||| || |||| |    
23772108 atgagtgttccatatgattgctatttttgctcaaatttgaggtcgttctttacggacgatcgggtttgtcataatatgcacgagacaattattttttgat 23772009  T
443 acctaaagtctttcaagccac 463  Q
    ||||  || ||||||||||||    
23772008 accttgagcctttcaagccac 23771988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 139 - 464
Target Start/End: Complemental strand, 19202761 - 19202437
Alignment:
139 gtcttagttattcattcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttatag 238  Q
    ||||||| | |||||| ||||||||||||   || |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||     
19202761 gtcttaggtgttcatttaaagcattttagactgatgctagtttacccttacattcaagagcacgatactttatggggcttgctagtgaaggtacttatat 19202662  T
239 gatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatata 338  Q
    ||| |||  ||||||| |||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| |    
19202661 gataaccttctcttttccgaatatcataaccggtgagattcagagccaaatatttccatatccattctaggttgttagatatttaaata-ttccaataca 19202563  T
339 tattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctt 438  Q
    ||||||||||| ||||||||||||||||| || |||||||||| || ||||| ||||| ||||||  ||| |||||||||||||||||||||||||||||    
19202562 tattatgagtgttccatatgaatgctatttttgcttgaatttgcggccgttctttacgaacgatcagttaggttatattacacacgagacaatttttctt 19202463  T
439 tggtacctaaagtctttcaagccacc 464  Q
    ||||||||| || |||||||||||||    
19202462 tggtacctagagcctttcaagccacc 19202437  T

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Target: chr7; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 207 - 446
Target Start/End: Original strand, 13251625 - 13251864
Alignment:
207 tttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattct 306  Q
    ||||| ||||||| |||||||| ||||||||| |||||| |||||||||||||||||||||||  ||||||| |||||||||||||||||||| |||| |    
13251625 tttctagggcttgctagtgaagctacttatagaatcacctactctttttcgaatagcataacctgtgagatttagagccaaatatttccatattcattat 13251724  T
307 aggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgat 406  Q
    ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| || |||||||||| |||||||| ||||||||||| |||    
13251725 aggttgttagatacttaaatatttccaatttatattatgagtgttccatatgaatgctatttttgcttgaatttgcggtcgttctttacggacgattgat 13251824  T
407 taagttatattacacacgagacaatttttctttggtacct 446  Q
    || |||||||||||||||||||||||||||||||| ||||    
13251825 taggttatattacacacgagacaatttttctttggcacct 13251864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 221 - 459
Target Start/End: Original strand, 39269126 - 39269364
Alignment:
221 tagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatac 320  Q
    |||| ||||||||||||  |||| || |||||||  ||||||||||||   ||||||||  |||||||||||||||||| ||||||||||||||||||||    
39269126 tagtaaaggtacttataaaatcatcatctcttttctgaatagcataactagtgagattcgcagccaaatatttccatatccattctaggttgttagatac 39269225  T
321 ttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattaca 420  Q
    ||||||| ||||||||||||||| ||||| ||||||||||| ||||| || ||||||||||  |  |||| ||||||| ||||| ||| |||||  ||||    
39269226 ttaaatatttccaatatatattacgagtgttccatatgaatactatttttgcttgaatttgcagctgttctttacggatgatcggttaggttattataca 39269325  T
421 cacgagacaatttttctttggtacctaaagtctttcaag 459  Q
    || ||||||||||||| |||||||||  || ||||||||    
39269326 caggagacaatttttcattggtaccttgagcctttcaag 39269364  T

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Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 153 - 326
Target Start/End: Original strand, 8315882 - 8316055
Alignment:
153 ttcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctt 252  Q
    ||||||||||||   ||||||||||||||||||||||||||||||| |||||||||||| ||||||| || ||||||||||||||||||||||  |||||    
8315882 ttcaaagcatttacagtggaggctagtttacccttacattcaagagaacgatactttctagggcttgctactgaaggtacttataggatcaccgtctctt 8315981  T
253 tttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaat 326  Q
    ||   ||||||||||||| ||||||| ||||| |||||||||| ||| ||||||||||||||||||| ||||||    
8315982 ttctaaatagcataaccggtgagatttagagctaaatatttccttatccattctaggttgttagatagttaaat 8316055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 169 - 444
Target Start/End: Complemental strand, 1586808 - 1586541
Alignment:
169 tggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataac 268  Q
    |||||||||||||||| || |||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||| |||||||  ||||| ||||||    
1586808 tggaggctagtttacctttgcattcaagagcacgatactttcaggggcttgctactgaaggtacttgtaggatcaccatctcttttctgaata-cataac 1586710  T
269 cgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctatta 368  Q
    | |||||||| |||||||||||||| || || ||||||| |||||||||||||||||| |||      | ||||||||||| ||||||||||| |||||     
1586709 caatgagatttagagccaaatattt-caaatccattctatgttgttagatacttaaattctt------tctattatgagtgttccatatgaattctattt 1586617  T
369 ttacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtac 444  Q
    || ||  ||||||| ||||||| |||| ||  |||| ||| ||||||||| | | ||| || ||||||||||||||    
1586616 ttgctcaaatttgtagtcgttctttacagaaaatcggttaggttatattataaatgaggcactttttctttggtac 1586541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 207 - 464
Target Start/End: Complemental strand, 20578689 - 20578446
Alignment:
207 tttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattct 306  Q
    ||||| ||||||| |||| | |||||||||||||||||||||||||||  |||||||||| ||| |||||||||||||||||||||| ||||| ||||||    
20578689 tttctagggcttgctagtaatggtacttataggatcaccaactcttttctgaatagcata-ccggtgagattcagagccaaatattttcatatccattct 20578591  T
307 aggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgat 406  Q
    |||| |||||||||| ||             ||||||||| || |||||||||||| ||||||| |||||||||  |  ||||| |||||||| | |  |    
20578590 aggtagttagatactcaa-------------atattatgaatgttccatatgaatgttattattgcttgaatttccgcccgttcgttacggacaaacagt 20578504  T
407 taagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacc 464  Q
    || ||||||||||||| ||| |||||||||||||||||||  || |||||||||||||    
20578503 taggttatattacacatgagtcaatttttctttggtaccttgagcctttcaagccacc 20578446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 165 - 272
Target Start/End: Complemental strand, 12389754 - 12389648
Alignment:
165 taggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagca 264  Q
    |||| ||||||||||| | |||||||||||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||||||||||||  ||||| ||    
12389754 taggcggaggctagtt-atccttacattcaagagcacgatactttatggggattgctagtgaaagtacttataggatcaccaactcttttctgaatatca 12389656  T
265 taaccgat 272  Q
     |||||||    
12389655 caaccgat 12389648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 372 - 485
Target Start/End: Complemental strand, 12389616 - 12389503
Alignment:
372 cttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacctcgttat 471  Q
    |||||||||  || ||||| ||||||||||||  ||| |||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |||||    
12389616 cttgaattttcggccgttcattacggacgatcagttaggttatattacacacgagacaatttttctttggtacctatagcctttcaatccaccttgttat 12389517  T
472 acttttattatcct 485  Q
    | | |||| |||||    
12389516 attcttatcatcct 12389503  T

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Target: chr7; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 343 - 485
Target Start/End: Original strand, 6038298 - 6038441
Alignment:
343 atgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaa-tttttctttgg 441  Q
    ||||||| | |||||| ||| |||| || || ||||||||||  |||| ||||||||||||| ||||||||||||||||| ||||||| ||||| |||||    
6038298 atgagtgtttcatatggatgttatttttgctcgaatttgtggctgttctttacggacgatcggttaagttatattacacatgagacaattttttatttgg 6038397  T
442 tacctaaagtctttcaagccacctcgttatacttttattatcct 485  Q
    |||||  || |||||||||||||   ||||| ||||||||||||    
6038398 taccttcagcctttcaagccacccttttatatttttattatcct 6038441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 343 - 435
Target Start/End: Original strand, 19155459 - 19155551
Alignment:
343 atgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaattttt 435  Q
    ||||||| | |||||||||| |||| || || ||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||    
19155459 atgagtgtttcatatgaatgttatttttgctcgaatttgcggtcgttctttacggacgatcggttaagttatattacacatgagacaattttt 19155551  T

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Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 343 - 435
Target Start/End: Original strand, 20754858 - 20754950
Alignment:
343 atgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaattttt 435  Q
    ||||||| | |||||||||| |||| || || ||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||    
20754858 atgagtgtttcatatgaatgttatttttgctcgaatttgcggtcgttctttacggacgatcggttaagttatattacacatgagacaattttt 20754950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 464
Target Start/End: Original strand, 8316065 - 8316173
Alignment:
355 tatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctt 454  Q
    |||||||| |||| || || ||||||  |||||||| |||||||| |||| | |  ||||| |||||||||| || ||||||||||||||||  ||||||    
8316065 tatgaatgttatttttgctcgaatttacggtcgttctttacggacaatcggtaatattataatacacacgaggca-tttttctttggtaccttgagtctt 8316163  T
455 tcaagccacc 464  Q
    |||| |||||    
8316164 tcaaaccacc 8316173  T

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Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 139 - 390
Target Start/End: Complemental strand, 25231962 - 25231711
Alignment:
139 gtcttagttattcattcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttatag 238  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| |||  |||  ||||||||||||||||||    
25231962 gtcttaggtattcattcaaagcattttaggcggaggctagtttacccttatattcaagagcacaatactttatggaactttctagtgaaggtacttatag 25231863  T
239 gatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatata 338  Q
    ||||||| |||||||| ||||||||||||||| ||||||||| || ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
25231862 gatcacctactcttttccgaatagcataaccggtgagattcaaagacaaatatttccatatgcattctaggttgttagatacttaaatatttccaatata 25231763  T
339 tattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttc 390  Q
    ||||||| ||| ||||||| |||||||||||| |||||||||| || |||||    
25231762 tattatgtgtgttccatatcaatgctattattgcttgaatttgcggccgttc 25231711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 168 - 464
Target Start/End: Complemental strand, 21320821 - 21320531
Alignment:
168 gtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataa 267  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||| |||| |||||  ||||||||||||||  |||||||||||||||||||    
21320821 gtggaggctagtttacccctacattcaagagcacggtactttctggggcttgctagttaaggtttttataggatcaccatatctttttcgaatagcataa 21320722  T
268 ccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctatt 367  Q
    ||| ||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||| |||||      |||||||||| |||||||||||||||||    
21320721 ccggtgagattcagagcgaaatatttccatatccattctagtttgttagatacataaatatttcca------attatgagtgttccatatgaatgctatt 21320628  T
368 attacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacc 464  Q
     || |||||||||| |||||||| ||||||| ||||| ||| |||||  |||| |||||||||||||||||||||||||  || |||||| ||||||    
21320627 tttgcttgaatttgaggtcgttctttacggatgatcggttaggttattatacatacgagacaatttttctttggtaccttgagcctttcaggccacc 21320531  T

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Target: chr8; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 272 - 485
Target Start/End: Complemental strand, 18571684 - 18571472
Alignment:
272 tgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattatta 371  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||| |||||||||| |||||| ||     
18571684 tgagattcagagccaaatatttccatatccattctaggttgttagatacttaaatatttccagtttatattatgagtgttccatatgaacgctatttttt 18571585  T
372 cttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacctcgttat 471  Q
    |||||||||| ||  |||| ||| ||||||||||||| ||||||||||||| ||| ||| |||||||||||||||| || |||||||||||||  |||||    
18571584 cttgaatttgcggctgttctttatggacgatcgattaggttatattacacatgaggcaa-ttttctttggtacctagagcctttcaagccaccctgttat 18571486  T
472 acttttattatcct 485  Q
    | | ||||||||||    
18571485 attcttattatcct 18571472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 226 - 446
Target Start/End: Original strand, 24721213 - 24721431
Alignment:
226 aaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaa 325  Q
    |||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
24721213 aaggtacttataggatcaccaactcttttctgaatagcataaccggtgagattcagagccaaatatttccatatccattctaggttgttagatacttaaa 24721312  T
326 tacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacga 425  Q
    || || ||||| |||||||||||| |  |||||||||||| | || |||||||| | |  ||||| ||||||||||||| ||| |||||  |||||||||    
24721313 ta-tttcaatacatattatgagtgttttatatgaatgctacttttgcttgaattagcgaccgttctttacggacgatcggttaggttattatacacacga 24721411  T
426 gacaatttttctttggtacct 446  Q
    | ||| |||||||||||||||    
24721412 ggcaa-ttttctttggtacct 24721431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 207 - 485
Target Start/End: Original strand, 26828618 - 26828897
Alignment:
207 tttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattct 306  Q
    ||||| ||||||| |||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||| | ||||    
26828618 tttctagggcttgctagtgaaggtacttatagaatcacctactattcttcgaatagcataaccgatgagatttagagccaaatatttccatatccgttct 26828717  T
307 aggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgcta-ttattacttgaatttgtggtcgttccttacggacgatcga 405  Q
    |||||||||| |||||||||| || ||||| |||||||||||| ||||| |||||| || || || |||||||||  || ||||| |||| ||||||||     
26828718 aggttgttaggtacttaaatattttcaatacatattatgagtgttccatgtgaatgttattttttccttgaattttcggacgttctttacagacgatcgg 26828817  T
406 ttaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacctcgttatacttttattatcct 485  Q
    ||| |||||  |||| ||||| ||||||||  |||||||||| || |||| ||||||||   ||||| | ||||||||||    
26828818 ttaggttattatacatacgaggcaattttttcttggtacctagagcctttgaagccaccctattatattcttattatcct 26828897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 239 - 430
Target Start/End: Original strand, 29761731 - 29761916
Alignment:
239 gatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatata 338  Q
    ||||| || |||||||  ||||| |||||  ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||         
29761731 gatcatcatctcttttctgaataacataaatgatgagattcagagccaaatagttccatatccattctaggttgttagatacttaaatatttcca----- 29761825  T
339 tattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaa 430  Q
     |||||||||| |||||||||||| |||| ||||||||||||| ||| |||| |||| |||||||  ||| |||||||||||||||||||||    
29761826 -attatgagtgttccatatgaatgttatttttacttgaatttgcggttgttctttacagacgatcagttaggttatattacacacgagacaa 29761916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 331 - 485
Target Start/End: Original strand, 17099176 - 17099329
Alignment:
331 ccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaa 430  Q
    ||||| ||||||||||||| || |||||||||||||| || ||||||||||||| ||||| ||| ||||||||| |||||||||   ||||||||| |||    
17099176 ccaatgtatattatgagtgttcgatatgaatgctatttttgcttgaatttgtggccgttctttatggacgatcggttaagttattacacacacgaggcaa 17099275  T
431 tttttctttggtacctaaagtctttcaagccacctcgttatacttttattatcct 485  Q
    ||||| ||||||||||| || |||||||||| ||  |||||| | ||||||||||    
17099276 tttttatttggtacctagag-ctttcaagccgccctgttatattcttattatcct 17099329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 167 - 297
Target Start/End: Complemental strand, 28857851 - 28857720
Alignment:
167 ggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttatagga-tcaccaactctttttcgaatagcat 265  Q
    |||||| |||||||||||||||||||||||||| |||||  || ||||||||  || |||||||||| |||  | |||||| |||||||  |||||||||    
28857851 ggtggaagctagtttacccttacattcaagagctcgataacttttggggcttactactgaaggtactcatattagtcaccatctcttttctgaatagcat 28857752  T
266 aaccgatgagattcagagccaaatatttccat 297  Q
    ||||| |||||||  |||||||||||||||||    
28857751 aaccggtgagattttgagccaaatatttccat 28857720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 464
Target Start/End: Complemental strand, 17511980 - 17511890
Alignment:
373 ttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacc 464  Q
    |||||||||||||| ||| ||||||||||||  ||| |||||  |||||||||| ||| |||||||||||| |   || |||||||||||||    
17511980 ttgaatttgtggtcattctttacggacgatcagttaggttattatacacacgaggcaa-ttttctttggtatcctgagcctttcaagccacc 17511890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 435
Target Start/End: Original strand, 21230199 - 21230290
Alignment:
344 tgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaattttt 435  Q
    |||||| | ||||||||||||||| || |  ||||||  |||  ||| |||||||||||| || | ||||||||||||||||| ||||||||    
21230199 tgagtgtttcatatgaatgctattttttcacgaattttcggttattctttacggacgatcaatcatgttatattacacacgaggcaattttt 21230290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 24721100 - 24721162
Alignment:
139 gtcttagttattcattcaaagcattttaggtggaggctagtttacccttacattcaagagcac 201  Q
    ||||||| |||||||||||||||||| |||   | ||||||||| || |||||||||||||||    
24721100 gtcttaggtattcattcaaagcatttaaggcataagctagtttatccatacattcaagagcac 24721162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 7e-84; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 207 - 464
Target Start/End: Complemental strand, 25097556 - 25097299
Alignment:
207 tttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattct 306  Q
    ||||| ||| ||| |||||||||||||||||  |||||| |||||||||||| |||||||| || |||||||||||||||||||||||||||| ||||||    
25097556 tttctagggtttgctagtgaaggtacttatacaatcacctactctttttcgattagcataaacggtgagattcagagccaaatatttccatatccattct 25097457  T
307 aggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgat 406  Q
    ||| ||||||||||||||||| |||||||| |||||||||||| |||||||||||| |||| || |||||| ||  |||||||| |||||||||||||||    
25097456 aggatgttagatacttaaatatttccaatacatattatgagtgttccatatgaatgttatttttgcttgaacttacggtcgttctttacggacgatcgat 25097357  T
407 taagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacc 464  Q
    || ||||||||||||||||| |||||||||||||||||||| || |||||||||||||    
25097356 taggttatattacacacgagtcaatttttctttggtacctagagcctttcaagccacc 25097299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 153 - 464
Target Start/End: Complemental strand, 12609211 - 12608907
Alignment:
153 ttcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctt 252  Q
    ||||||||  ||| || |||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| |||||||| |||||    
12609211 ttcaaagcgcttttggcggaggctagtttacccttacattcaagagcacgatactttctggggcttaccagtgaaggtacttataagatcaccatctctt 12609112  T
253 tttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatc 352  Q
    ||  |||||| |||||||||||||||||||||| ||||||||  ||| |||||||  |||||||||||||||||| || ||      |||||||||| ||    
12609111 ttctgaatagaataaccgatgagattcagagcc-aatatttcgttatccattctaaattgttagatacttaaatattttca------attatgagtgttc 12609019  T
353 catatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtc 452  Q
    ||||||||||||||| || |||||||||| |   |||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||  || |    
12609018 catatgaatgctatttttgcttgaatttgcgacagttctttacggacgatcaattaggttatattacacacgagacaatttttctttggtaccttgagcc 12608919  T
453 tttcaagccacc 464  Q
    ||||||||||||    
12608918 tttcaagccacc 12608907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 170 - 464
Target Start/End: Original strand, 13130684 - 13130972
Alignment:
170 ggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataacc 269  Q
    ||||||| ||||| ||||||||||||||||| |||||||| || |||||| | ||||||||||||| | |||||||| ||||||| |||||| |||||||    
13130684 ggaggctggtttatccttacattcaagagcatgatactttatgcggcttgctcgtgaaggtacttaaaagatcaccatctcttttccgaatatcataacc 13130783  T
270 gatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattat 369  Q
    | ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| || ||      |||||| ||| |||| |||||||||||| |    
13130784 ggtgagatttagagcccaatatttccatatccattctaggttgttagatacttaaatattttca------attatgtgtgttccaaatgaatgctatttt 13130877  T
370 tacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacc 464  Q
    | |||||||||| || ||||| ||||||||||||| ||| ||||||||||||||| | |||||||||||||||||||  || |||||||||||||    
13130878 tgcttgaatttgcggccgttctttacggacgatcggttaggttatattacacacgtggcaatttttctttggtaccttgagcctttcaagccacc 13130972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 175 - 461
Target Start/End: Complemental strand, 17110236 - 17109968
Alignment:
175 ctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatga 274  Q
    ||||||||| |||||||||||||| |||||||||| ||||||||  ||||||| ||||| ||| |||||||| |||||||| |||||||||||           
17110236 ctagtttactcttacattcaagagtacgatactttttggggctttctagtgaaagtactgatatgatcaccatctcttttttgaatagcataa------- 17110144  T
275 gattcagagccaaatatttccatatacattctaggttgtt----agatacttaaatacttccaatatatattatgagtgatccatatgaatgctattatt 370  Q
                  ||||| ||||| ||||||||||||||    ||||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||    
17110143 --------------tattttcatatccattctaggttgtttgttagatacttaaatacttccaatatatat-atgagagttccatatgaatgctattttt 17110059  T
371 acttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagcc 461  Q
     ||||||||||| ||||||| ||||||| ||||| ||| ||||||||||||||||||||| |||||||||||||||| || ||||||||||    
17110058 gcttgaatttgttgtcgttctttacggatgatcggttaggttatattacacacgagacaacttttctttggtacctagagcctttcaagcc 17109968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 207 - 464
Target Start/End: Complemental strand, 25923865 - 25923608
Alignment:
207 tttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattct 306  Q
    ||||| ||||||| |||||||||||||||||| |||||| |||||||| | ||||||||||||| |||||||||||||||||| ||| ||||| ||||||    
25923865 tttctagggcttgctagtgaaggtacttatagaatcacctactcttttccaaatagcataaccggtgagattcagagccaaattttttcatatccattct 25923766  T
307 aggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgat 406  Q
    ||||||||||||||||||||| ||| ||   |||||||||||| |||||||||||| |||| || |||||||||  || ||||| |||| |||||||| |    
25923765 aggttgttagatacttaaatatttctaaatcatattatgagtgttccatatgaatgttatttttgcttgaattttcggccgttctttactgacgatcggt 25923666  T
407 taagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacc 464  Q
    |||||||||||||||||||| |||||||||||||||||||| || |||||||||||||    
25923665 taagttatattacacacgaggcaatttttctttggtacctagagcctttcaagccacc 25923608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 205 - 446
Target Start/End: Complemental strand, 28922748 - 28922507
Alignment:
205 actttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacatt 304  Q
    ||||||| ||||||| |||| || |||||||||||||||||| |||||||  |||||||||||| | ||||||||| |||||||||||||||||| ||||    
28922748 actttctagggcttgctagtaaatgtacttataggatcaccatctcttttctgaatagcataactggtgagattcaaagccaaatatttccatatccatt 28922649  T
305 ctaggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcg 404  Q
     |||||||||| ||||||||||||||| |||||| |||||||||| ||||||||||||||||| || |||||||||  |||||||| |||||||||||||    
28922648 ataggttgttatatacttaaatacttctaatatacattatgagtgttccatatgaatgctatttttgcttgaatttacggtcgttctttacggacgatcg 28922549  T
405 attaagttatattacacacgagacaatttttctttggtacct 446  Q
    |||| |||||  |||||||||| || ||||||||||||||||    
28922548 attaggttattatacacacgaggcattttttctttggtacct 28922507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 207 - 485
Target Start/End: Complemental strand, 25533434 - 25533172
Alignment:
207 tttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattct 306  Q
    ||||| ||||||| |||||||||||||||||| |||||| |||||||||||||   |||||||| |||||||||||||||||||||||||||| |||| |    
25533434 tttctagggcttgctagtgaaggtacttatagaatcacctactctttttcgaa---cataaccggtgagattcagagccaaatatttccatatccattat 25533338  T
307 aggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgat 406  Q
    | ||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| || ||||||||||             ||| |||||  |    
25533337 atgttgttagatacttaaatacttccaatttatattatgagtgttccatatgaatgttatttttgcttgaatttg-------------cggtcgatcagt 25533251  T
407 taagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacctcgttatacttttattatcct 485  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||   ||||| | ||||||||||    
25533250 taagttatattacacacgaggcaatttttctttggtacctaaagcctttcaagcgaccctattatattcttattatcct 25533172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 170 - 463
Target Start/End: Original strand, 23008839 - 23009127
Alignment:
170 ggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataacc 269  Q
    |||| |||| |||||||| ||||||||| ||||||||||| ||||||||| || ||||||||||||||||||||| | |||||||  |||||||||||||    
23008839 ggagcctagcttaccctttcattcaagaacacgatactttatggggcttgctactgaaggtacttataggatcactatctcttttatgaatagcataacc 23008938  T
270 gatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattat 369  Q
    | ||||||| |||| |||||||||||| || |||||||| ||||||||||||||||| |      | | ||||||||||| |  ||| |||||||||| |    
23008939 gttgagatttagagtcaaatatttcca-attcattctagattgttagatacttaaattc------tgtctattatgagtgttttatacgaatgctatttt 23009031  T
370 tacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagaca--atttttctttggtacctaaagtctttcaagccac 463  Q
    | || ||||||| || ||||  ||||||||||||| |||| ||||| |||||||||  ||  |||||| | ||||||||  || ||||||||||||    
23009032 tgctcgaatttgcggccgttttttacggacgatcggttaaattataatacacacgatgcatcatttttatctggtaccttgagcctttcaagccac 23009127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 464
Target Start/End: Complemental strand, 16815949 - 16815755
Alignment:
257 gaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccata 356  Q
    |||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||||  |||   || |  |||||       ||||||||| ||||||    
16815949 gaatagcataaccggtgagatttagagccaaatattttcatatccattctaggttgtttcata---aattttttcca-------ttatgagtgctccata 16815860  T
357 tgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttc 456  Q
    |||||| |||| || || ||||||| || ||||| ||||||||||||| |||  ||||| |||||| || ||   |||||||||||||||  || |||||    
16815859 tgaatgttatttttgctcgaatttgcggccgttctttacggacgatcggttagattataatacacatgacac---ttttctttggtaccttgagcctttc 16815763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 464
Target Start/End: Complemental strand, 16855106 - 16854912
Alignment:
257 gaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccata 356  Q
    |||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||||  |||   || |  |||||       ||||||||| ||||||    
16855106 gaatagcataaccggtgagatttagagccaaatattttcatatccattctaggttgtttcata---aattttttcca-------ttatgagtgctccata 16855017  T
357 tgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttc 456  Q
    |||||| |||| || || ||||||| || ||||| ||||||||||||| |||  ||||| |||||| || ||   |||||||||||||||  || |||||    
16855016 tgaatgttatttttgctcgaatttgcggccgttctttacggacgatcggttagattataatacacatgacac---ttttctttggtaccttgagcctttc 16854920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 16816005 - 16815955
Alignment:
169 tggaggctagtttacccttacattcaagagcacgatactttctggggcttg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
16816005 tggaggctagtttacccttacattcaagagcacgatactttctgaggcttg 16815955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 16855162 - 16855112
Alignment:
169 tggaggctagtttacccttacattcaagagcacgatactttctggggcttg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
16855162 tggaggctagtttacccttacattcaagagcacgatactttctgaggcttg 16855112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 464
Target Start/End: Original strand, 22565625 - 22565746
Alignment:
343 atgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggt 442  Q
    ||||||| |||| ||||||| |||| || |||||||||||||| |||||||||  || |||  | | ||||||||||||||||  |||||||| || |||    
22565625 atgagtgttccaaatgaatgttatttttgcttgaatttgtggttgttccttacaaacaatcagtcatgttatattacacacgatgcaattttttttgggt 22565724  T
443 acctaaagtctttcaagccacc 464  Q
    |||| ||| |||||||||||||    
22565725 accttaagcctttcaagccacc 22565746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 207 - 464
Target Start/End: Original strand, 21844569 - 21844827
Alignment:
207 tttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattct 306  Q
    ||||| ||||||| |||| |||||||||||||||||||||||||||||   ||||||||||| | |||||||||||||||||||||||||||| ||||||    
21844569 tttctagggcttgctagtaaaggtacttataggatcaccaactcttttcttaatagcataactggtgagattcagagccaaatatttccatatccattct 21844668  T
307 aggttgttagatacttaaatacttccaatat--atattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcg 404  Q
    |||||||||||||| |||||| |||||||||  |||||||||||| ||||||||||||||||| || ||||||||| ||| ||||| |||||||||||||    
21844669 aggttgttagatacataaatatttccaatatacatattatgagtgttccatatgaatgctatttttgcttgaatttatggccgttctttacggacgatcg 21844768  T
405 attaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacc 464  Q
    |||| |||||  |||||||||| |||||| | ||||||| ||  || |||||||||||||    
21844769 attaggttattatacacacgaggcaatttct-tttggtatcttgagcctttcaagccacc 21844827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 211 - 464
Target Start/End: Original strand, 9870131 - 9870383
Alignment:
211 tggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggt 310  Q
    ||||| ||| |||||||||||||||||||||||| || | |||| | ||||||||||||| ||||||||| |||||||||||| ||||| ||||||||||    
9870131 tgggggttgctagtgaaggtacttataggatcacaaattgttttccaaatagcataaccggtgagattcatagccaaatattttcatatccattctaggt 9870230  T
311 tgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaag 410  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || || ||||||| |  ||||| |||| |||||||| ||| |    
9870231 tgttagatacttaaatatttccaatatatattatgagtgttccatatgaatgctatttttgctcgaatttgcgtccgttctttacagacgatcggttagg 9870330  T
411 ttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacc 464  Q
    || |  ||||||| ||  || |||||||||||||||  || |||||||||||||    
9870331 ttgttatacacacaag-gaaattttctttggtaccttgagcctttcaagccacc 9870383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 213 - 485
Target Start/End: Original strand, 23843572 - 23843846
Alignment:
213 gggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttg 312  Q
    ||||||| ||| ||||||  |||||| |||||| |||||||| |||||||||||||   ||| ||||| | |||||||||||||||| ||||||||||||    
23843572 gggcttgctagggaaggtgtttatagaatcacctactcttttccgaatagcataactagtgatattcataaccaaatatttccatatccattctaggttg 23843671  T
313 ttagatacttaaatacttccaatata--tattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaag 410  Q
      ||||||||||||| ||  ||||||  |||||||| || ||||||||||||||| | || |||||||||| ||| |||| ||||  ||||||| ||| |    
23843672 caagatacttaaatatttataatatacatattatgactgttccatatgaatgctacttttgcttgaatttgcggttgttctttacaaacgatcggttagg 23843771  T
411 ttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacctcgttatacttttattatcct 485  Q
    |||||||||| ||||| ||||||||||||  |||||| ||||||||||||||||   ||||| | ||||||||||    
23843772 ttatattacatacgaggcaatttttctttcatacctagagtctttcaagccaccctattatattcttattatcct 23843846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 15455602 - 15455504
Alignment:
168 gtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcata 266  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| |||||||||||| || |||||||| ||||||||||    
15455602 gtggaggctagtttacccttacattcaagagcacgatactttttggggcttgctactgaaggtgcttataggatcatcatctcttttttgaatagcata 15455504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 267 - 404
Target Start/End: Complemental strand, 22571032 - 22570901
Alignment:
267 accgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctat 366  Q
    |||| ||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||      |  |||||||||| ||||||||||||||||    
22571032 accggtgagatttagagccatatatttccatatccattctaggttgttagatacttaaatactt------tccattatgagtgttccatatgaatgctat 22570939  T
367 tattacttgaatttgtggtcgttccttacggacgatcg 404  Q
    | |  || ||||||| || | ||| ||||| |||||||    
22570938 tttacctggaatttgcggccattctttacgaacgatcg 22570901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 11176537 - 11176600
Alignment:
191 ttcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttt 254  Q
    ||||||||||| ||||||| ||||||||| || |||||||||||||||||||| || |||||||    
11176537 ttcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctctttt 11176600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 293
Target Start/End: Original strand, 22525511 - 22525632
Alignment:
172 aggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccga 271  Q
    ||||||| ||||| |||||||||| ||| |||||  |  || |||||  || ||||||||||||||  ||||||| |||||||  ||||||||||| |      
22525511 aggctaggttaccattacattcaaaagctcgataactattgaggcttactactgaaggtacttatataatcaccatctcttttctgaatagcataatcag 22525610  T
272 tgagattcagagccaaatattt 293  Q
    ||||||| | ||||||||||||    
22525611 tgagatttatagccaaatattt 22525632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 147 - 485
Target Start/End: Complemental strand, 18828662 - 18828332
Alignment:
147 tattcattcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcacca 246  Q
    |||||||||||||||||||| | |||| ||||||||| ||||||||||||||||| | ||||| ||||||||| |||||||||||||||| |||| |||     
18828662 tattcattcaaagcattttacggggagcctagtttactcttacattcaagagcacaagactttttggggcttgctagtgaaggtacttatgggataaccg 18828563  T
247 actctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatga 346  Q
               ||||||||||||| | ||||||||||||||||||| |||||| ||||||||||| | ||||||||||||| |||||||| |||||||||    
18828562 gta--------aatagcataaccggtaagattcagagccaaatattcccatattcattctaggttttcagatacttaaatatttccaatacatattatga 18828471  T
347 gtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacct 446  Q
    ||| |||||||||||| ||| ||| ||||||||||  |||||||  ||||||| |||| ||| ||||||||| |||  ||  ||||||||||| ||||||    
18828470 gtgttccatatgaatgttatcattgcttgaatttgatgtcgttctgtacggacaatcggttaggttatattagacagaaggaaatttttcttttgtacct 18828371  T
447 aaagtctttcaagccacctcgttatacttttattatcct 485  Q
    | || |||||||||||||  |||||| | ||||||||||    
18828370 agagcctttcaagccaccctgttatattcttattatcct 18828332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 6e-63; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 229 - 435
Target Start/End: Original strand, 34275372 - 34275578
Alignment:
229 gtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatac 328  Q
    ||||||||| |||||||| |||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
34275372 gtacttataagatcaccatctcttttctgaatagcataaccggtgagattcagagccaaatatttccatatccattctaggttgttagatacttaaaaac 34275471  T
329 ttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagac 428  Q
    ||||||| ||||| ||||||| ||||||||||||||||| || |||||||||| |||| ||| ||||||||||| ||||| |||||  |||||||  |||    
34275472 ttccaatttatatcatgagtgttccatatgaatgctatttttgcttgaatttgcggtcattctttacggacgattgattaggttattatacacacatgac 34275571  T
429 aattttt 435  Q
    |||||||    
34275572 aattttt 34275578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 240 - 464
Target Start/End: Complemental strand, 19913768 - 19913545
Alignment:
240 atcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatat 339  Q
    ||||||| |||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||    
19913768 atcaccatctcttttctgaatagcataaccggtgagattcagagccaaatatttccatatccattctaggttgttagatacttaaatactt-aaatatat 19913670  T
340 attatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttcttt 439  Q
    ||| | |||| ||||||| |||| |||| || |||||||||| |||||||| ||||| || ||| | ||||||||  |||||||||| ||||||||| ||    
19913669 attgtaagtgttccatataaatgttatttttgcttgaatttgcggtcgttctttacgaacaatcaactaagttattatacacacgagtcaatttttcatt 19913570  T
440 ggtacctaaagtctttcaagccacc 464  Q
    |||||||  || |||||||||||||    
19913569 ggtaccttgagcctttcaagccacc 19913545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 139 - 463
Target Start/End: Original strand, 12770029 - 12770348
Alignment:
139 gtcttagttattcattc-aaagcattttaggtggaggctagtttaccctta--cattcaagagcacgatactttctggggcttgttagtgaaggtactta 235  Q
    ||||||| ||||||||  |||||||||   |||||||||||||||| | ||  | ||||||||   ||||||||||||||||||||||||||||||||||    
12770029 gtcttaggtattcattttaaagcatttacagtggaggctagtttacgcctattctttcaagagtttgatactttctggggcttgttagtgaaggtactta 12770128  T
236 taggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaat 335  Q
    || ||| |||| || ||||   ||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| |      
12770129 taagat-accatctattttcaaaatagcataaccggtgagattcagagccaaatatttccatatccattctaggttcttagatacttaaatatttcta-- 12770225  T
336 atatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaattttt 435  Q
        |||||||||| |||||||||||||||||  |  ||||||||| |||||||| |||||||| |||| ||| |||||  ||||||| |||| ||||||    
12770226 ----attatgagtgttccatatgaatgctatttctgtttgaatttgcggtcgttctttacggacaatcggttaggttattatacacacaagac-attttt 12770320  T
436 ctttggtacctaaagtctttcaagccac 463  Q
    |||| ||||||  || ||| ||||||||    
12770321 ctttagtaccttgagccttccaagccac 12770348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 172 - 341
Target Start/End: Original strand, 19166117 - 19166285
Alignment:
172 aggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccga 271  Q
    ||||||||||||| |||||||||||||  ||||||||| ||||||||| | |||||||||||||||||||| ||| |||||||  |||||||| |||||     
19166117 aggctagtttacctttacattcaagagtgcgatacttt-tggggcttgctcgtgaaggtacttataggatcgccatctcttttatgaatagcacaaccgg 19166215  T
272 tgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatat 341  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
19166216 tgagattcatagccaaatatttccatatccattctaggttgttagatacttaaataattccaatatatat 19166285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 168 - 464
Target Start/End: Complemental strand, 17142610 - 17142323
Alignment:
168 gtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataa 267  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||| || | || | |||||||||||| |||||||| || ||||   ||||||||||    
17142610 gtggaggctagtttacccttacattcaagagcacgatagtttatgggactggctactaaaggtacttataagatcaccatcttttttctaaatagcataa 17142511  T
268 ccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctatt 367  Q
    ||| |||||||  ||| ||||||||| || ||| || |||||||||||| ||||||||| |||      | || |||||||| |||||||||||||||||    
17142510 ccgctgagatttggagtcaaatattttca-atatatcctaggttgttaggtacttaaattctt------tctactatgagtgttccatatgaatgctatt 17142418  T
368 attacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacc 464  Q
     || || |||||||||||| ||| ||||||||||||||||| ||  ||  ||| ||||| || ||||||||||||||||  || |||||||||||||    
17142417 tttgctcgaatttgtggtcattctttacggacgatcgattatgt--taacacaaacgaggcattttttctttggtaccttgagcctttcaagccacc 17142323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 213 - 446
Target Start/End: Complemental strand, 13586804 - 13586571
Alignment:
213 gggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcata-accgatgagattcagagccaaatatttccatatacattctaggtt 311  Q
    ||||||| |||| || ||||||||||||||| ||||||||||  |||||||||| || |||||| ||||||||||||||||| ||||| |||||||||||    
13586804 gggcttgctagtaaaagtacttataggatcaacaactcttttctgaatagcatatactgatgaggttcagagccaaatattttcatatccattctaggtt 13586705  T
312 gttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagt 411  Q
     |||||||||||| || ||| |||| ||||||||| || ||||||||||||||||| || ||||||||||| | ||||| |||| ||||||   ||| ||    
13586704 attagatacttaagtatttcaaatacatattatgaatgttccatatgaatgctatttttgcttgaatttgtagccgttctttacagacgataagttaggt 13586605  T
412 tatattacacacgagacaatttttctttggtacct 446  Q
    | |  |||||||||| ||| |||||||||||||||    
13586604 tgttatacacacgaggcaa-ttttctttggtacct 13586571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 207 - 337
Target Start/End: Complemental strand, 8766880 - 8766750
Alignment:
207 tttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattct 306  Q
    ||||| ||||||| |||| |||||| ||||||||||||||||||||||  |||| ||||||||| |||||||||||||||||||||||||||| ||||||    
8766880 tttctagggcttgctagtaaaggtaattataggatcaccaactcttttctgaattgcataaccggtgagattcagagccaaatatttccatatccattct 8766781  T
307 aggttgttagatacttaaatacttccaatat 337  Q
    ||||||||||||||||||||| |||||||||    
8766780 aggttgttagatacttaaatatttccaatat 8766750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 207 - 367
Target Start/End: Original strand, 19578076 - 19578236
Alignment:
207 tttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattct 306  Q
    ||||| ||||||| |||||||| |||| |||| |||||| |||||||| |||||| ||||| || ||| ||| | |||||||||||||||||| ||||||    
19578076 tttctagggcttgctagtgaagatactcatagtatcacctactcttttccgaatatcataatcggtgaaatttatagccaaatatttccatatccattct 19578175  T
307 aggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctatt 367  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| ||||    
19578176 aggttgttagatacttaaatatttccaatacatattatgagtgttccatatgaatgttatt 19578236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 315 - 485
Target Start/End: Original strand, 8880396 - 8880566
Alignment:
315 agatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttat 414  Q
    ||||||||||||| |||||||| |||||||||||| || ||||||||| ||||||| |||||||||| |||||||  ||| ||| ||||| ||| |||||    
8880396 agatacttaaatatttccaatacatattatgagtgttcaatatgaatgttattatttcttgaatttgcggtcgttttttatggatgatcgcttaggttat 8880495  T
415 attacacacgagacaatttttctttggtacctaaagtctttcaagccacctcgttatacttttattatcct 485  Q
    ||||||||||||||||| ||||||||||||||| || |||||||||||||   ||||| | ||||||||||    
8880496 attacacacgagacaatatttctttggtacctagagcctttcaagccaccctattatattcttattatcct 8880566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 215 - 337
Target Start/End: Complemental strand, 8771755 - 8771633
Alignment:
215 gcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgtt 314  Q
    ||||| |||| |||||| ||||||||||||||||||||||  |||| ||||||||| |||||||||||||||||||||||||||| ||||||| ||||||    
8771755 gcttgctagtaaaggtaattataggatcaccaactcttttctgaattgcataaccggtgagattcagagccaaatatttccatatccattctaagttgtt 8771656  T
315 agatacttaaatacttccaatat 337  Q
    ||||||||||||| |||||||||    
8771655 agatacttaaatatttccaatat 8771633  T

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Target: chr3; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 157 - 305
Target Start/End: Complemental strand, 16227306 - 16227158
Alignment:
157 aagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttc 256  Q
    ||||||||  |||| ||||||||||||||||||||||||||||| |||||||| ||  ||||| | |||||||||||||||||| ||||| |||||||      
16227306 aagcatttacggtgaaggctagtttacccttacattcaagagcatgatactttttgaagcttgcttgtgaaggtacttataggaccaccatctcttttct 16227207  T
257 gaatagcataaccgatgagattcagagccaaatatttccatatacattc 305  Q
    |||||||||||||  ||||||| |||| ||||||||| ||||| |||||    
16227206 gaatagcataaccagtgagatttagagtcaaatattttcatatccattc 16227158  T

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Target: chr3; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 334 - 464
Target Start/End: Original strand, 19166318 - 19166449
Alignment:
334 atatatat-tatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatt 432  Q
    |||||||| |||||||| ||||||||||  ||||| |||||||||||||||||||||| |||| |||||||| ||| |||||  ||||||||||||||||    
19166318 atatatatatatgagtgttccatatgaacactatttttacttgaatttgtggtcgttctttacagacgatcggttaggttattatacacacgagacaatt 19166417  T
433 tttctttggtacctaaagtctttcaagccacc 464  Q
    |||||||| |||||  ||||||||||||||||    
19166418 tttctttgctaccttgagtctttcaagccacc 19166449  T

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Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 8878724 - 8878793
Alignment:
247 actctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttag 316  Q
    ||||| || ||||||| ||||||  ||||||| |||||||||||||||||||| ||||||||||||||||    
8878724 actctgttccgaatagtataacctgtgagatttagagccaaatatttccatatccattctaggttgttag 8878793  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 464
Target Start/End: Complemental strand, 8146907 - 8146798
Alignment:
355 tatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctt 454  Q
    ||||||||||||| || | |||||||| |  | ||| ||||||||||||  ||| |||||  |||||||||| |||||||||||||||| ||  || |||    
8146907 tatgaatgctatttttgcatgaatttgagaccattctttacggacgatcagttaggttattatacacacgaggcaatttttctttggtaacttgagcctt 8146808  T
455 tcaagccacc 464  Q
    ||||||||||    
8146807 tcaagccacc 8146798  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 13586902 - 13586840
Alignment:
139 gtcttagttattcattcaaagcattttaggtggaggctagtttacccttacattcaagagcac 201  Q
    ||||||| |||||||||||||||||  |||  |||||||||||| || |||||||||||||||    
13586902 gtcttaggtattcattcaaagcattaaaggcagaggctagtttatccatacattcaagagcac 13586840  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 430
Target Start/End: Original strand, 20315379 - 20315464
Alignment:
344 tgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaa 430  Q
    |||||| |||||||||||| | || ||||| ||||||||||||| || ||| |||| |||||| | |||||| ||||||||||||||    
20315379 tgagtgttccatatgaatgttttt-ttactcgaatttgtggtcgctctttatggactatcgatcatgttatactacacacgagacaa 20315464  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 8766960 - 8766897
Alignment:
139 gtcttagttattcatt-caaagcattttaggtggaggctagtttacccttacattcaagagcac 201  Q
    ||||||| |||||||| |||||||||| |||  |||||||||||| || |||||||||||||||    
8766960 gtcttaggtattcatttcaaagcatttaaggcagaggctagtttatccatacattcaagagcac 8766897  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 8771843 - 8771780
Alignment:
139 gtcttagttattcatt-caaagcattttaggtggaggctagtttacccttacattcaagagcac 201  Q
    ||||||| |||||||| |||||||||| |||  |||||||||||| || |||||||||||||||    
8771843 gtcttaggtattcatttcaaagcatttaaggcagaggctagtttatccatacattcaagagcac 8771780  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 426
Target Start/End: Original strand, 20337270 - 20337351
Alignment:
344 tgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgag 426  Q
    |||||| |||||||||||| | || ||||| ||||||||||||| || ||| |||| |||||| | |||||| ||||||||||    
20337270 tgagtgttccatatgaatgttttt-ttactcgaatttgtggtcgctctttatggactatcgatcatgttatactacacacgag 20337351  T

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Target: scaffold0072 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 39448 - 39384
Alignment:
169 tggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtact 233  Q
    ||||||||||||||| ||||||||||| | || ||||  || ||||||||| || ||||||||||    
39448 tggaggctagtttactcttacattcaacaacaggataacttttggggcttgctactgaaggtact 39384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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