View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18484_high_3 (Length: 498)
Name: NF18484_high_3
Description: NF18484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18484_high_3 |
 |  |
|
| [»] scaffold0072 (1 HSPs) |
 |  |  |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 139 - 488
Target Start/End: Complemental strand, 9834785 - 9834436
Alignment:
| Q |
139 |
gtcttagttattcattcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttatag |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9834785 |
gtcttagttattcattcaaagcattttaggcggaggctaatttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttatag |
9834686 |
T |
 |
| Q |
239 |
gatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatata |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9834685 |
gatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatatttccaatata |
9834586 |
T |
 |
| Q |
339 |
tattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctt |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9834585 |
tattatgagtgatccatatgaatgctattattacctgaatgtgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctt |
9834486 |
T |
 |
| Q |
439 |
tggtacctaaagtctttcaagccacctcgttatacttttattatcctatg |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9834485 |
tggtacctaaagtctttcaagccacctcgttatacttttattatcctatg |
9834436 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 147 - 459
Target Start/End: Complemental strand, 19054407 - 19054096
Alignment:
| Q |
147 |
tattcattcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcacca |
246 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19054407 |
tattcattcaaagcattttaggcggaggctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtacttataggatcacca |
19054308 |
T |
 |
| Q |
247 |
actctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatga |
346 |
Q |
| |
|
||||||| |||||||||||||| ||| | || ||||||| |||||||||| |||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
19054307 |
tctcttttctgaatagcataaccggtgatttacatagccaaacatttccatattcattctaggtagttagatacttaaata-ttccaatatatattatga |
19054209 |
T |
 |
| Q |
347 |
gtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacct |
446 |
Q |
| |
|
||| ||||| ||||||||||||| |||||||||| | |||| ||| ||||||||| ||| ||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
19054208 |
gtgttccattagaatgctattattgcttgaatttgcgactgttctttatggacgatcggttaggttatattacatgcgagaccatttttctttggtacct |
19054109 |
T |
 |
| Q |
447 |
aaagtctttcaag |
459 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19054108 |
aaagtctttcaag |
19054096 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 139 - 326
Target Start/End: Complemental strand, 9826573 - 9826386
Alignment:
| Q |
139 |
gtcttagttattcattcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttatag |
238 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9826573 |
gtcttagttatttatttaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttatag |
9826474 |
T |
 |
| Q |
239 |
gatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaat |
326 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
9826473 |
gatcaccaactcttttttgaatagcataaccgatgagattcaaagccaaatattttcatatccattttaggttgttagatacttaaat |
9826386 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 157 - 404
Target Start/End: Original strand, 31598889 - 31599132
Alignment:
| Q |
157 |
aagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttc |
256 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||| | |
|
|
| T |
31598889 |
aagcatttacggtggatgctagtttacccttacatttaagagcacgatactttctggggcttgctactgatggtacttataggatcaccatctcttttcc |
31598988 |
T |
 |
| Q |
257 |
gaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttg-ttagatacttaaatacttccaatatatattatgagtgatccat |
355 |
Q |
| |
|
||||||| ||| | |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
31598989 |
aaatagcaaaactggtgagattcagagccaaatattttcatatccattctaggttgtttagatacttaaatacttccaata-----tatgagatttccat |
31599083 |
T |
 |
| Q |
356 |
atgaatgctattattacttgaatttgtggtcgttccttacggacgatcg |
404 |
Q |
| |
|
||||||| |||| || || ||||||| || ||||| |||| |||||||| |
|
|
| T |
31599084 |
atgaatgttatttttgctcgaatttgcggccgttctttacagacgatcg |
31599132 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 211 - 434
Target Start/End: Original strand, 24319424 - 24319649
Alignment:
| Q |
211 |
tggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggt |
310 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
24319424 |
tggggcttgctagtaaaggtacttataggatcaacaactcttttctgaatagcataaccggtgagattcagagccaaatattttcttatccattctaggt |
24319523 |
T |
 |
| Q |
311 |
tgttagatacttaaatacttccaatatat--attatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgatta |
408 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| |||| | ||||||| ||||||| || | ||||||||| ||||||| ||||||||||||| || |
|
|
| T |
24319524 |
tgttagatacttaaatactttcaatatatagattacaagtgttacatatgagtgctatttttgcatgaatttgttgtcgttctttacggacgatcggcta |
24319623 |
T |
 |
| Q |
409 |
agttatattacacacgagacaatttt |
434 |
Q |
| |
|
||||| |||||||||| ||||||| |
|
|
| T |
24319624 |
ggttattatacacacgaggcaatttt |
24319649 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 286 - 485
Target Start/End: Original strand, 20547364 - 20547563
Alignment:
| Q |
286 |
aaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggt |
385 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||||| | |||||| |||||||| ||||||| |||| |||||||||||| |||| || |||||||||| || |
|
|
| T |
20547364 |
aaatatctccatatccattgtaggttgttagatgcataaatatttccaatacatattatcagtgttccatatgaatgttatttttgcttgaatttgcggc |
20547463 |
T |
 |
| Q |
386 |
cgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacctcgttatacttttattatcct |
485 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||| ||||| |||||||||||| |
|
|
| T |
20547464 |
cgttctttacggacgatcggttaagttatattacaaacgaggaaattttactttggtacctagagtctttcaagccaccctattatatttttattatcct |
20547563 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 153 - 485
Target Start/End: Complemental strand, 31213787 - 31213461
Alignment:
| Q |
153 |
ttcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctt |
252 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| || ||||||||| ||||||| ||||||||| || | |||||||||||||||||||| |||| |
|
|
| T |
31213787 |
ttcaaagcatttatggtggaggctagtttacccttccactcaagagcataatactttatggggcttgctacttaaggtacttataggatcaccgtttctt |
31213688 |
T |
 |
| Q |
253 |
tttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttg-ttagatacttaaatacttccaatatatattatgagtgat |
351 |
Q |
| |
|
|| |||||| ||| || ||||||| ||| |||||||| ||| | | |||||||||||| ||| |||||||||| |||||| |||||||||| | |
|
|
| T |
31213687 |
ttctaaatagcttaatcggtgagatttagaaccaaatatctccgt-ttcattctaggttgtttatatacttaaattcttcca------attatgagtgtt |
31213595 |
T |
 |
| Q |
352 |
ccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagt |
451 |
Q |
| |
|
| ||||||||| |||| || |||||||||| || |||| |||||||| || ||| |||| |||||||||||||||||||||||||||||| || |
|
|
| T |
31213594 |
ctatatgaatgttatttttgcttgaatttgcggcagttctttacggaccattcgttagattattatacacacgagacaatttttctttggtaccttgagc |
31213495 |
T |
 |
| Q |
452 |
ctttcaagccacctcgttatacttttattatcct |
485 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||| |
|
|
| T |
31213494 |
ctttcaagccacccatttatatttttagtatcct |
31213461 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 392 - 488
Target Start/End: Complemental strand, 9826383 - 9826287
Alignment:
| Q |
392 |
ttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacctcgttatacttttattatcctatg |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9826383 |
ttacggacgatcgattaagttatattacacacgaggaaatttttctttggtacctaaagtctttcaagccacctcgttatacttttattatcctatg |
9826287 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 9834908 - 9834849
Alignment:
| Q |
17 |
aggcacaactatttttattcattgtgcatgttttacatatacatgtattatctaataaaa |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9834908 |
aggcacaactatttttattcattgtgcatgttttacatatacatgtattatctaataaaa |
9834849 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 16783541 - 16783608
Alignment:
| Q |
139 |
gtcttagttattcattcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatac |
206 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16783541 |
gtcttaggtattcattcaaagcattttaggcggaggctagtttacccttacattcaagagcacgatac |
16783608 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 24263338 - 24263211
Alignment:
| Q |
169 |
tggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataac |
268 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| | ||| | || || |||||||||| ||| |||||||| ||||||| |||||||||||| |
|
|
| T |
24263338 |
tggaggctaatttacccttacatttaagagcacgataactattggaggttactactgaaggtactcatatgatcaccatctcttttctgaatagcataac |
24263239 |
T |
 |
| Q |
269 |
cgatgagattcagagccaaatatttcca |
296 |
Q |
| |
|
|| ||||||| ||||||||||||||||| |
|
|
| T |
24263238 |
cggtgagatttagagccaaatatttcca |
24263211 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 9826689 - 9826630
Alignment:
| Q |
17 |
aggcacaactatttttattcattgtgcatgttttacatatacatgtattatctaataaaa |
76 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9826689 |
aggcacaactatttttattcattgaccatgttttacatatacatgtattatctaataaaa |
9826630 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 337 - 464
Target Start/End: Complemental strand, 34489985 - 34489859
Alignment:
| Q |
337 |
tatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttc |
436 |
Q |
| |
|
||||||||||||| |||||||||||||||| || ||||||| || |||| |||||||||||||||||||||||| |||||||||| | ||||||| |
|
|
| T |
34489985 |
tatattatgagtgttccatatgaatgctatctttgtccgaatttgcggcagttctttacggacgatcgattaagttataatacacacgaggc-atttttc |
34489887 |
T |
 |
| Q |
437 |
tttggtacctaaagtctttcaagccacc |
464 |
Q |
| |
|
|||||||||| || |||| |||||||| |
|
|
| T |
34489886 |
tttggtaccttgagccttttaagccacc |
34489859 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 25405210 - 25405260
Alignment:
| Q |
169 |
tggaggctagtttacccttacattcaagagcacgatactttctggggcttg |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
25405210 |
tggaggctagtttacccctacattcaagagcacgatactttttggggcttg |
25405260 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 435
Target Start/End: Complemental strand, 24263174 - 24263090
Alignment:
| Q |
351 |
tccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaattttt |
435 |
Q |
| |
|
||||||||||| || || || || |||||| |||||||| |||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24263174 |
tccatatgaatactgtttttgctcgaatttacggtcgttctttacatacgatcagttaagttatattacacacgagacaattttt |
24263090 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 463
Target Start/End: Complemental strand, 23772108 - 23771988
Alignment:
| Q |
343 |
atgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggt |
442 |
Q |
| |
|
||||||| ||||||||| ||||||| || || |||||| |||||||| ||||||||||||| | || ||| || |||||||||||| || |||| | |
|
|
| T |
23772108 |
atgagtgttccatatgattgctatttttgctcaaatttgaggtcgttctttacggacgatcgggtttgtcataatatgcacgagacaattattttttgat |
23772009 |
T |
 |
| Q |
443 |
acctaaagtctttcaagccac |
463 |
Q |
| |
|
|||| || |||||||||||| |
|
|
| T |
23772008 |
accttgagcctttcaagccac |
23771988 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 139 - 464
Target Start/End: Complemental strand, 19202761 - 19202437
Alignment:
| Q |
139 |
gtcttagttattcattcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttatag |
238 |
Q |
| |
|
||||||| | |||||| |||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
19202761 |
gtcttaggtgttcatttaaagcattttagactgatgctagtttacccttacattcaagagcacgatactttatggggcttgctagtgaaggtacttatat |
19202662 |
T |
 |
| Q |
239 |
gatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatata |
338 |
Q |
| |
|
||| ||| ||||||| |||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| | |
|
|
| T |
19202661 |
gataaccttctcttttccgaatatcataaccggtgagattcagagccaaatatttccatatccattctaggttgttagatatttaaata-ttccaataca |
19202563 |
T |
 |
| Q |
339 |
tattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctt |
438 |
Q |
| |
|
||||||||||| ||||||||||||||||| || |||||||||| || ||||| ||||| |||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
19202562 |
tattatgagtgttccatatgaatgctatttttgcttgaatttgcggccgttctttacgaacgatcagttaggttatattacacacgagacaatttttctt |
19202463 |
T |
 |
| Q |
439 |
tggtacctaaagtctttcaagccacc |
464 |
Q |
| |
|
||||||||| || ||||||||||||| |
|
|
| T |
19202462 |
tggtacctagagcctttcaagccacc |
19202437 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 207 - 446
Target Start/End: Original strand, 13251625 - 13251864
Alignment:
| Q |
207 |
tttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattct |
306 |
Q |
| |
|
||||| ||||||| |||||||| ||||||||| |||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||| | |
|
|
| T |
13251625 |
tttctagggcttgctagtgaagctacttatagaatcacctactctttttcgaatagcataacctgtgagatttagagccaaatatttccatattcattat |
13251724 |
T |
 |
| Q |
307 |
aggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgat |
406 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| || |||||||||| |||||||| ||||||||||| ||| |
|
|
| T |
13251725 |
aggttgttagatacttaaatatttccaatttatattatgagtgttccatatgaatgctatttttgcttgaatttgcggtcgttctttacggacgattgat |
13251824 |
T |
 |
| Q |
407 |
taagttatattacacacgagacaatttttctttggtacct |
446 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13251825 |
taggttatattacacacgagacaatttttctttggcacct |
13251864 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 221 - 459
Target Start/End: Original strand, 39269126 - 39269364
Alignment:
| Q |
221 |
tagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatac |
320 |
Q |
| |
|
|||| |||||||||||| |||| || ||||||| |||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39269126 |
tagtaaaggtacttataaaatcatcatctcttttctgaatagcataactagtgagattcgcagccaaatatttccatatccattctaggttgttagatac |
39269225 |
T |
 |
| Q |
321 |
ttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattaca |
420 |
Q |
| |
|
||||||| ||||||||||||||| ||||| ||||||||||| ||||| || |||||||||| | |||| ||||||| ||||| ||| ||||| |||| |
|
|
| T |
39269226 |
ttaaatatttccaatatatattacgagtgttccatatgaatactatttttgcttgaatttgcagctgttctttacggatgatcggttaggttattataca |
39269325 |
T |
 |
| Q |
421 |
cacgagacaatttttctttggtacctaaagtctttcaag |
459 |
Q |
| |
|
|| ||||||||||||| ||||||||| || |||||||| |
|
|
| T |
39269326 |
caggagacaatttttcattggtaccttgagcctttcaag |
39269364 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 153 - 326
Target Start/End: Original strand, 8315882 - 8316055
Alignment:
| Q |
153 |
ttcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctt |
252 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||||||||||||||| ||||| |
|
|
| T |
8315882 |
ttcaaagcatttacagtggaggctagtttacccttacattcaagagaacgatactttctagggcttgctactgaaggtacttataggatcaccgtctctt |
8315981 |
T |
 |
| Q |
253 |
tttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaat |
326 |
Q |
| |
|
|| ||||||||||||| ||||||| ||||| |||||||||| ||| ||||||||||||||||||| |||||| |
|
|
| T |
8315982 |
ttctaaatagcataaccggtgagatttagagctaaatatttccttatccattctaggttgttagatagttaaat |
8316055 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 169 - 444
Target Start/End: Complemental strand, 1586808 - 1586541
Alignment:
| Q |
169 |
tggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataac |
268 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||| ||||||| ||||| |||||| |
|
|
| T |
1586808 |
tggaggctagtttacctttgcattcaagagcacgatactttcaggggcttgctactgaaggtacttgtaggatcaccatctcttttctgaata-cataac |
1586710 |
T |
 |
| Q |
269 |
cgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctatta |
368 |
Q |
| |
|
| |||||||| |||||||||||||| || || ||||||| |||||||||||||||||| ||| | ||||||||||| ||||||||||| ||||| |
|
|
| T |
1586709 |
caatgagatttagagccaaatattt-caaatccattctatgttgttagatacttaaattctt------tctattatgagtgttccatatgaattctattt |
1586617 |
T |
 |
| Q |
369 |
ttacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtac |
444 |
Q |
| |
|
|| || ||||||| ||||||| |||| || |||| ||| ||||||||| | | ||| || |||||||||||||| |
|
|
| T |
1586616 |
ttgctcaaatttgtagtcgttctttacagaaaatcggttaggttatattataaatgaggcactttttctttggtac |
1586541 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 207 - 464
Target Start/End: Complemental strand, 20578689 - 20578446
Alignment:
| Q |
207 |
tttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattct |
306 |
Q |
| |
|
||||| ||||||| |||| | ||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||| ||||| |||||| |
|
|
| T |
20578689 |
tttctagggcttgctagtaatggtacttataggatcaccaactcttttctgaatagcata-ccggtgagattcagagccaaatattttcatatccattct |
20578591 |
T |
 |
| Q |
307 |
aggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgat |
406 |
Q |
| |
|
|||| |||||||||| || ||||||||| || |||||||||||| ||||||| ||||||||| | ||||| |||||||| | | | |
|
|
| T |
20578590 |
aggtagttagatactcaa-------------atattatgaatgttccatatgaatgttattattgcttgaatttccgcccgttcgttacggacaaacagt |
20578504 |
T |
 |
| Q |
407 |
taagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacc |
464 |
Q |
| |
|
|| ||||||||||||| ||| ||||||||||||||||||| || ||||||||||||| |
|
|
| T |
20578503 |
taggttatattacacatgagtcaatttttctttggtaccttgagcctttcaagccacc |
20578446 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 165 - 272
Target Start/End: Complemental strand, 12389754 - 12389648
Alignment:
| Q |
165 |
taggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagca |
264 |
Q |
| |
|
|||| ||||||||||| | |||||||||||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||||| ||||| || |
|
|
| T |
12389754 |
taggcggaggctagtt-atccttacattcaagagcacgatactttatggggattgctagtgaaagtacttataggatcaccaactcttttctgaatatca |
12389656 |
T |
 |
| Q |
265 |
taaccgat |
272 |
Q |
| |
|
||||||| |
|
|
| T |
12389655 |
caaccgat |
12389648 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 372 - 485
Target Start/End: Complemental strand, 12389616 - 12389503
Alignment:
| Q |
372 |
cttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacctcgttat |
471 |
Q |
| |
|
||||||||| || ||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||| |
|
|
| T |
12389616 |
cttgaattttcggccgttcattacggacgatcagttaggttatattacacacgagacaatttttctttggtacctatagcctttcaatccaccttgttat |
12389517 |
T |
 |
| Q |
472 |
acttttattatcct |
485 |
Q |
| |
|
| | |||| ||||| |
|
|
| T |
12389516 |
attcttatcatcct |
12389503 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 343 - 485
Target Start/End: Original strand, 6038298 - 6038441
Alignment:
| Q |
343 |
atgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaa-tttttctttgg |
441 |
Q |
| |
|
||||||| | |||||| ||| |||| || || |||||||||| |||| ||||||||||||| ||||||||||||||||| ||||||| ||||| ||||| |
|
|
| T |
6038298 |
atgagtgtttcatatggatgttatttttgctcgaatttgtggctgttctttacggacgatcggttaagttatattacacatgagacaattttttatttgg |
6038397 |
T |
 |
| Q |
442 |
tacctaaagtctttcaagccacctcgttatacttttattatcct |
485 |
Q |
| |
|
||||| || ||||||||||||| ||||| |||||||||||| |
|
|
| T |
6038398 |
taccttcagcctttcaagccacccttttatatttttattatcct |
6038441 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 343 - 435
Target Start/End: Original strand, 19155459 - 19155551
Alignment:
| Q |
343 |
atgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaattttt |
435 |
Q |
| |
|
||||||| | |||||||||| |||| || || ||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
19155459 |
atgagtgtttcatatgaatgttatttttgctcgaatttgcggtcgttctttacggacgatcggttaagttatattacacatgagacaattttt |
19155551 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 343 - 435
Target Start/End: Original strand, 20754858 - 20754950
Alignment:
| Q |
343 |
atgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaattttt |
435 |
Q |
| |
|
||||||| | |||||||||| |||| || || ||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
20754858 |
atgagtgtttcatatgaatgttatttttgctcgaatttgcggtcgttctttacggacgatcggttaagttatattacacatgagacaattttt |
20754950 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 464
Target Start/End: Original strand, 8316065 - 8316173
Alignment:
| Q |
355 |
tatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctt |
454 |
Q |
| |
|
|||||||| |||| || || |||||| |||||||| |||||||| |||| | | ||||| |||||||||| || |||||||||||||||| |||||| |
|
|
| T |
8316065 |
tatgaatgttatttttgctcgaatttacggtcgttctttacggacaatcggtaatattataatacacacgaggca-tttttctttggtaccttgagtctt |
8316163 |
T |
 |
| Q |
455 |
tcaagccacc |
464 |
Q |
| |
|
|||| ||||| |
|
|
| T |
8316164 |
tcaaaccacc |
8316173 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 139 - 390
Target Start/End: Complemental strand, 25231962 - 25231711
Alignment:
| Q |
139 |
gtcttagttattcattcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttatag |
238 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||| ||| |||||||||||||||||| |
|
|
| T |
25231962 |
gtcttaggtattcattcaaagcattttaggcggaggctagtttacccttatattcaagagcacaatactttatggaactttctagtgaaggtacttatag |
25231863 |
T |
 |
| Q |
239 |
gatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatata |
338 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| ||||||||| || ||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25231862 |
gatcacctactcttttccgaatagcataaccggtgagattcaaagacaaatatttccatatgcattctaggttgttagatacttaaatatttccaatata |
25231763 |
T |
 |
| Q |
339 |
tattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttc |
390 |
Q |
| |
|
||||||| ||| ||||||| |||||||||||| |||||||||| || ||||| |
|
|
| T |
25231762 |
tattatgtgtgttccatatcaatgctattattgcttgaatttgcggccgttc |
25231711 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 168 - 464
Target Start/End: Complemental strand, 21320821 - 21320531
Alignment:
| Q |
168 |
gtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataa |
267 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
21320821 |
gtggaggctagtttacccctacattcaagagcacggtactttctggggcttgctagttaaggtttttataggatcaccatatctttttcgaatagcataa |
21320722 |
T |
 |
| Q |
268 |
ccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctatt |
367 |
Q |
| |
|
||| ||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||| ||||| |||||||||| ||||||||||||||||| |
|
|
| T |
21320721 |
ccggtgagattcagagcgaaatatttccatatccattctagtttgttagatacataaatatttcca------attatgagtgttccatatgaatgctatt |
21320628 |
T |
 |
| Q |
368 |
attacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacc |
464 |
Q |
| |
|
|| |||||||||| |||||||| ||||||| ||||| ||| ||||| |||| ||||||||||||||||||||||||| || |||||| |||||| |
|
|
| T |
21320627 |
tttgcttgaatttgaggtcgttctttacggatgatcggttaggttattatacatacgagacaatttttctttggtaccttgagcctttcaggccacc |
21320531 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 272 - 485
Target Start/End: Complemental strand, 18571684 - 18571472
Alignment:
| Q |
272 |
tgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattatta |
371 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||| |||||||||| |||||| || |
|
|
| T |
18571684 |
tgagattcagagccaaatatttccatatccattctaggttgttagatacttaaatatttccagtttatattatgagtgttccatatgaacgctatttttt |
18571585 |
T |
 |
| Q |
372 |
cttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacctcgttat |
471 |
Q |
| |
|
|||||||||| || |||| ||| ||||||||||||| ||||||||||||| ||| ||| |||||||||||||||| || ||||||||||||| ||||| |
|
|
| T |
18571584 |
cttgaatttgcggctgttctttatggacgatcgattaggttatattacacatgaggcaa-ttttctttggtacctagagcctttcaagccaccctgttat |
18571486 |
T |
 |
| Q |
472 |
acttttattatcct |
485 |
Q |
| |
|
| | |||||||||| |
|
|
| T |
18571485 |
attcttattatcct |
18571472 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 226 - 446
Target Start/End: Original strand, 24721213 - 24721431
Alignment:
| Q |
226 |
aaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaa |
325 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24721213 |
aaggtacttataggatcaccaactcttttctgaatagcataaccggtgagattcagagccaaatatttccatatccattctaggttgttagatacttaaa |
24721312 |
T |
 |
| Q |
326 |
tacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacga |
425 |
Q |
| |
|
|| || ||||| |||||||||||| | |||||||||||| | || |||||||| | | ||||| ||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
24721313 |
ta-tttcaatacatattatgagtgttttatatgaatgctacttttgcttgaattagcgaccgttctttacggacgatcggttaggttattatacacacga |
24721411 |
T |
 |
| Q |
426 |
gacaatttttctttggtacct |
446 |
Q |
| |
|
| ||| ||||||||||||||| |
|
|
| T |
24721412 |
ggcaa-ttttctttggtacct |
24721431 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 207 - 485
Target Start/End: Original strand, 26828618 - 26828897
Alignment:
| Q |
207 |
tttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattct |
306 |
Q |
| |
|
||||| ||||||| |||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||| | |||| |
|
|
| T |
26828618 |
tttctagggcttgctagtgaaggtacttatagaatcacctactattcttcgaatagcataaccgatgagatttagagccaaatatttccatatccgttct |
26828717 |
T |
 |
| Q |
307 |
aggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgcta-ttattacttgaatttgtggtcgttccttacggacgatcga |
405 |
Q |
| |
|
|||||||||| |||||||||| || ||||| |||||||||||| ||||| |||||| || || || ||||||||| || ||||| |||| |||||||| |
|
|
| T |
26828718 |
aggttgttaggtacttaaatattttcaatacatattatgagtgttccatgtgaatgttattttttccttgaattttcggacgttctttacagacgatcgg |
26828817 |
T |
 |
| Q |
406 |
ttaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacctcgttatacttttattatcct |
485 |
Q |
| |
|
||| ||||| |||| ||||| |||||||| |||||||||| || |||| |||||||| ||||| | |||||||||| |
|
|
| T |
26828818 |
ttaggttattatacatacgaggcaattttttcttggtacctagagcctttgaagccaccctattatattcttattatcct |
26828897 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 239 - 430
Target Start/End: Original strand, 29761731 - 29761916
Alignment:
| Q |
239 |
gatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatata |
338 |
Q |
| |
|
||||| || ||||||| ||||| ||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
29761731 |
gatcatcatctcttttctgaataacataaatgatgagattcagagccaaatagttccatatccattctaggttgttagatacttaaatatttcca----- |
29761825 |
T |
 |
| Q |
339 |
tattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaa |
430 |
Q |
| |
|
|||||||||| |||||||||||| |||| ||||||||||||| ||| |||| |||| ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
29761826 |
-attatgagtgttccatatgaatgttatttttacttgaatttgcggttgttctttacagacgatcagttaggttatattacacacgagacaa |
29761916 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 331 - 485
Target Start/End: Original strand, 17099176 - 17099329
Alignment:
| Q |
331 |
ccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaa |
430 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||||| || ||||||||||||| ||||| ||| ||||||||| ||||||||| ||||||||| ||| |
|
|
| T |
17099176 |
ccaatgtatattatgagtgttcgatatgaatgctatttttgcttgaatttgtggccgttctttatggacgatcggttaagttattacacacacgaggcaa |
17099275 |
T |
 |
| Q |
431 |
tttttctttggtacctaaagtctttcaagccacctcgttatacttttattatcct |
485 |
Q |
| |
|
||||| ||||||||||| || |||||||||| || |||||| | |||||||||| |
|
|
| T |
17099276 |
tttttatttggtacctagag-ctttcaagccgccctgttatattcttattatcct |
17099329 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 167 - 297
Target Start/End: Complemental strand, 28857851 - 28857720
Alignment:
| Q |
167 |
ggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttatagga-tcaccaactctttttcgaatagcat |
265 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| || |||||||| || |||||||||| ||| | |||||| ||||||| ||||||||| |
|
|
| T |
28857851 |
ggtggaagctagtttacccttacattcaagagctcgataacttttggggcttactactgaaggtactcatattagtcaccatctcttttctgaatagcat |
28857752 |
T |
 |
| Q |
266 |
aaccgatgagattcagagccaaatatttccat |
297 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| |
|
|
| T |
28857751 |
aaccggtgagattttgagccaaatatttccat |
28857720 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 464
Target Start/End: Complemental strand, 17511980 - 17511890
Alignment:
| Q |
373 |
ttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacc |
464 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| ||| ||||| |||||||||| ||| |||||||||||| | || ||||||||||||| |
|
|
| T |
17511980 |
ttgaatttgtggtcattctttacggacgatcagttaggttattatacacacgaggcaa-ttttctttggtatcctgagcctttcaagccacc |
17511890 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 435
Target Start/End: Original strand, 21230199 - 21230290
Alignment:
| Q |
344 |
tgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaattttt |
435 |
Q |
| |
|
|||||| | ||||||||||||||| || | |||||| ||| ||| |||||||||||| || | ||||||||||||||||| |||||||| |
|
|
| T |
21230199 |
tgagtgtttcatatgaatgctattttttcacgaattttcggttattctttacggacgatcaatcatgttatattacacacgaggcaattttt |
21230290 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 24721100 - 24721162
Alignment:
| Q |
139 |
gtcttagttattcattcaaagcattttaggtggaggctagtttacccttacattcaagagcac |
201 |
Q |
| |
|
||||||| |||||||||||||||||| ||| | ||||||||| || ||||||||||||||| |
|
|
| T |
24721100 |
gtcttaggtattcattcaaagcatttaaggcataagctagtttatccatacattcaagagcac |
24721162 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 7e-84; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 207 - 464
Target Start/End: Complemental strand, 25097556 - 25097299
Alignment:
| Q |
207 |
tttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattct |
306 |
Q |
| |
|
||||| ||| ||| ||||||||||||||||| |||||| |||||||||||| |||||||| || |||||||||||||||||||||||||||| |||||| |
|
|
| T |
25097556 |
tttctagggtttgctagtgaaggtacttatacaatcacctactctttttcgattagcataaacggtgagattcagagccaaatatttccatatccattct |
25097457 |
T |
 |
| Q |
307 |
aggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgat |
406 |
Q |
| |
|
||| ||||||||||||||||| |||||||| |||||||||||| |||||||||||| |||| || |||||| || |||||||| ||||||||||||||| |
|
|
| T |
25097456 |
aggatgttagatacttaaatatttccaatacatattatgagtgttccatatgaatgttatttttgcttgaacttacggtcgttctttacggacgatcgat |
25097357 |
T |
 |
| Q |
407 |
taagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacc |
464 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||| |
|
|
| T |
25097356 |
taggttatattacacacgagtcaatttttctttggtacctagagcctttcaagccacc |
25097299 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 153 - 464
Target Start/End: Complemental strand, 12609211 - 12608907
Alignment:
| Q |
153 |
ttcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctt |
252 |
Q |
| |
|
|||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |
|
|
| T |
12609211 |
ttcaaagcgcttttggcggaggctagtttacccttacattcaagagcacgatactttctggggcttaccagtgaaggtacttataagatcaccatctctt |
12609112 |
T |
 |
| Q |
253 |
tttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatc |
352 |
Q |
| |
|
|| |||||| |||||||||||||||||||||| |||||||| ||| ||||||| |||||||||||||||||| || || |||||||||| || |
|
|
| T |
12609111 |
ttctgaatagaataaccgatgagattcagagcc-aatatttcgttatccattctaaattgttagatacttaaatattttca------attatgagtgttc |
12609019 |
T |
 |
| Q |
353 |
catatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtc |
452 |
Q |
| |
|
||||||||||||||| || |||||||||| | |||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
12609018 |
catatgaatgctatttttgcttgaatttgcgacagttctttacggacgatcaattaggttatattacacacgagacaatttttctttggtaccttgagcc |
12608919 |
T |
 |
| Q |
453 |
tttcaagccacc |
464 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12608918 |
tttcaagccacc |
12608907 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 170 - 464
Target Start/End: Original strand, 13130684 - 13130972
Alignment:
| Q |
170 |
ggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataacc |
269 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |||||||| || |||||| | ||||||||||||| | |||||||| ||||||| |||||| ||||||| |
|
|
| T |
13130684 |
ggaggctggtttatccttacattcaagagcatgatactttatgcggcttgctcgtgaaggtacttaaaagatcaccatctcttttccgaatatcataacc |
13130783 |
T |
 |
| Q |
270 |
gatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattat |
369 |
Q |
| |
|
| ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| || || |||||| ||| |||| |||||||||||| | |
|
|
| T |
13130784 |
ggtgagatttagagcccaatatttccatatccattctaggttgttagatacttaaatattttca------attatgtgtgttccaaatgaatgctatttt |
13130877 |
T |
 |
| Q |
370 |
tacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacc |
464 |
Q |
| |
|
| |||||||||| || ||||| ||||||||||||| ||| ||||||||||||||| | ||||||||||||||||||| || ||||||||||||| |
|
|
| T |
13130878 |
tgcttgaatttgcggccgttctttacggacgatcggttaggttatattacacacgtggcaatttttctttggtaccttgagcctttcaagccacc |
13130972 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 175 - 461
Target Start/End: Complemental strand, 17110236 - 17109968
Alignment:
| Q |
175 |
ctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatga |
274 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| |||||||| ||||||| ||||| ||| |||||||| |||||||| ||||||||||| |
|
|
| T |
17110236 |
ctagtttactcttacattcaagagtacgatactttttggggctttctagtgaaagtactgatatgatcaccatctcttttttgaatagcataa------- |
17110144 |
T |
 |
| Q |
275 |
gattcagagccaaatatttccatatacattctaggttgtt----agatacttaaatacttccaatatatattatgagtgatccatatgaatgctattatt |
370 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||||| || |
|
|
| T |
17110143 |
--------------tattttcatatccattctaggttgtttgttagatacttaaatacttccaatatatat-atgagagttccatatgaatgctattttt |
17110059 |
T |
 |
| Q |
371 |
acttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagcc |
461 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||||| ||| ||||||||||||||||||||| |||||||||||||||| || |||||||||| |
|
|
| T |
17110058 |
gcttgaatttgttgtcgttctttacggatgatcggttaggttatattacacacgagacaacttttctttggtacctagagcctttcaagcc |
17109968 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 207 - 464
Target Start/End: Complemental strand, 25923865 - 25923608
Alignment:
| Q |
207 |
tttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattct |
306 |
Q |
| |
|
||||| ||||||| |||||||||||||||||| |||||| |||||||| | ||||||||||||| |||||||||||||||||| ||| ||||| |||||| |
|
|
| T |
25923865 |
tttctagggcttgctagtgaaggtacttatagaatcacctactcttttccaaatagcataaccggtgagattcagagccaaattttttcatatccattct |
25923766 |
T |
 |
| Q |
307 |
aggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgat |
406 |
Q |
| |
|
||||||||||||||||||||| ||| || |||||||||||| |||||||||||| |||| || ||||||||| || ||||| |||| |||||||| | |
|
|
| T |
25923765 |
aggttgttagatacttaaatatttctaaatcatattatgagtgttccatatgaatgttatttttgcttgaattttcggccgttctttactgacgatcggt |
25923666 |
T |
 |
| Q |
407 |
taagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacc |
464 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| |
|
|
| T |
25923665 |
taagttatattacacacgaggcaatttttctttggtacctagagcctttcaagccacc |
25923608 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 205 - 446
Target Start/End: Complemental strand, 28922748 - 28922507
Alignment:
| Q |
205 |
actttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacatt |
304 |
Q |
| |
|
||||||| ||||||| |||| || |||||||||||||||||| ||||||| |||||||||||| | ||||||||| |||||||||||||||||| |||| |
|
|
| T |
28922748 |
actttctagggcttgctagtaaatgtacttataggatcaccatctcttttctgaatagcataactggtgagattcaaagccaaatatttccatatccatt |
28922649 |
T |
 |
| Q |
305 |
ctaggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcg |
404 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||| ||||||||||||||||| || ||||||||| |||||||| ||||||||||||| |
|
|
| T |
28922648 |
ataggttgttatatacttaaatacttctaatatacattatgagtgttccatatgaatgctatttttgcttgaatttacggtcgttctttacggacgatcg |
28922549 |
T |
 |
| Q |
405 |
attaagttatattacacacgagacaatttttctttggtacct |
446 |
Q |
| |
|
|||| ||||| |||||||||| || |||||||||||||||| |
|
|
| T |
28922548 |
attaggttattatacacacgaggcattttttctttggtacct |
28922507 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 207 - 485
Target Start/End: Complemental strand, 25533434 - 25533172
Alignment:
| Q |
207 |
tttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattct |
306 |
Q |
| |
|
||||| ||||||| |||||||||||||||||| |||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||| |||| | |
|
|
| T |
25533434 |
tttctagggcttgctagtgaaggtacttatagaatcacctactctttttcgaa---cataaccggtgagattcagagccaaatatttccatatccattat |
25533338 |
T |
 |
| Q |
307 |
aggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgat |
406 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| || |||||||||| ||| ||||| | |
|
|
| T |
25533337 |
atgttgttagatacttaaatacttccaatttatattatgagtgttccatatgaatgttatttttgcttgaatttg-------------cggtcgatcagt |
25533251 |
T |
 |
| Q |
407 |
taagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacctcgttatacttttattatcct |
485 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||| | |||||||||| |
|
|
| T |
25533250 |
taagttatattacacacgaggcaatttttctttggtacctaaagcctttcaagcgaccctattatattcttattatcct |
25533172 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 170 - 463
Target Start/End: Original strand, 23008839 - 23009127
Alignment:
| Q |
170 |
ggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataacc |
269 |
Q |
| |
|
|||| |||| |||||||| ||||||||| ||||||||||| ||||||||| || ||||||||||||||||||||| | ||||||| ||||||||||||| |
|
|
| T |
23008839 |
ggagcctagcttaccctttcattcaagaacacgatactttatggggcttgctactgaaggtacttataggatcactatctcttttatgaatagcataacc |
23008938 |
T |
 |
| Q |
270 |
gatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattat |
369 |
Q |
| |
|
| ||||||| |||| |||||||||||| || |||||||| ||||||||||||||||| | | | ||||||||||| | ||| |||||||||| | |
|
|
| T |
23008939 |
gttgagatttagagtcaaatatttcca-attcattctagattgttagatacttaaattc------tgtctattatgagtgttttatacgaatgctatttt |
23009031 |
T |
 |
| Q |
370 |
tacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagaca--atttttctttggtacctaaagtctttcaagccac |
463 |
Q |
| |
|
| || ||||||| || |||| ||||||||||||| |||| ||||| ||||||||| || |||||| | |||||||| || |||||||||||| |
|
|
| T |
23009032 |
tgctcgaatttgcggccgttttttacggacgatcggttaaattataatacacacgatgcatcatttttatctggtaccttgagcctttcaagccac |
23009127 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 464
Target Start/End: Complemental strand, 16815949 - 16815755
Alignment:
| Q |
257 |
gaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccata |
356 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||| ||| || | ||||| ||||||||| |||||| |
|
|
| T |
16815949 |
gaatagcataaccggtgagatttagagccaaatattttcatatccattctaggttgtttcata---aattttttcca-------ttatgagtgctccata |
16815860 |
T |
 |
| Q |
357 |
tgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttc |
456 |
Q |
| |
|
|||||| |||| || || ||||||| || ||||| ||||||||||||| ||| ||||| |||||| || || ||||||||||||||| || ||||| |
|
|
| T |
16815859 |
tgaatgttatttttgctcgaatttgcggccgttctttacggacgatcggttagattataatacacatgacac---ttttctttggtaccttgagcctttc |
16815763 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 464
Target Start/End: Complemental strand, 16855106 - 16854912
Alignment:
| Q |
257 |
gaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccata |
356 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||| ||| || | ||||| ||||||||| |||||| |
|
|
| T |
16855106 |
gaatagcataaccggtgagatttagagccaaatattttcatatccattctaggttgtttcata---aattttttcca-------ttatgagtgctccata |
16855017 |
T |
 |
| Q |
357 |
tgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttc |
456 |
Q |
| |
|
|||||| |||| || || ||||||| || ||||| ||||||||||||| ||| ||||| |||||| || || ||||||||||||||| || ||||| |
|
|
| T |
16855016 |
tgaatgttatttttgctcgaatttgcggccgttctttacggacgatcggttagattataatacacatgacac---ttttctttggtaccttgagcctttc |
16854920 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 16816005 - 16815955
Alignment:
| Q |
169 |
tggaggctagtttacccttacattcaagagcacgatactttctggggcttg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16816005 |
tggaggctagtttacccttacattcaagagcacgatactttctgaggcttg |
16815955 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 16855162 - 16855112
Alignment:
| Q |
169 |
tggaggctagtttacccttacattcaagagcacgatactttctggggcttg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16855162 |
tggaggctagtttacccttacattcaagagcacgatactttctgaggcttg |
16855112 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 464
Target Start/End: Original strand, 22565625 - 22565746
Alignment:
| Q |
343 |
atgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggt |
442 |
Q |
| |
|
||||||| |||| ||||||| |||| || |||||||||||||| ||||||||| || ||| | | |||||||||||||||| |||||||| || ||| |
|
|
| T |
22565625 |
atgagtgttccaaatgaatgttatttttgcttgaatttgtggttgttccttacaaacaatcagtcatgttatattacacacgatgcaattttttttgggt |
22565724 |
T |
 |
| Q |
443 |
acctaaagtctttcaagccacc |
464 |
Q |
| |
|
|||| ||| ||||||||||||| |
|
|
| T |
22565725 |
accttaagcctttcaagccacc |
22565746 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 207 - 464
Target Start/End: Original strand, 21844569 - 21844827
Alignment:
| Q |
207 |
tttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattct |
306 |
Q |
| |
|
||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |||||| |
|
|
| T |
21844569 |
tttctagggcttgctagtaaaggtacttataggatcaccaactcttttcttaatagcataactggtgagattcagagccaaatatttccatatccattct |
21844668 |
T |
 |
| Q |
307 |
aggttgttagatacttaaatacttccaatat--atattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcg |
404 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| |||||||||||| ||||||||||||||||| || ||||||||| ||| ||||| ||||||||||||| |
|
|
| T |
21844669 |
aggttgttagatacataaatatttccaatatacatattatgagtgttccatatgaatgctatttttgcttgaatttatggccgttctttacggacgatcg |
21844768 |
T |
 |
| Q |
405 |
attaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacc |
464 |
Q |
| |
|
|||| ||||| |||||||||| |||||| | ||||||| || || ||||||||||||| |
|
|
| T |
21844769 |
attaggttattatacacacgaggcaatttct-tttggtatcttgagcctttcaagccacc |
21844827 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 211 - 464
Target Start/End: Original strand, 9870131 - 9870383
Alignment:
| Q |
211 |
tggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggt |
310 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| || | |||| | ||||||||||||| ||||||||| |||||||||||| ||||| |||||||||| |
|
|
| T |
9870131 |
tgggggttgctagtgaaggtacttataggatcacaaattgttttccaaatagcataaccggtgagattcatagccaaatattttcatatccattctaggt |
9870230 |
T |
 |
| Q |
311 |
tgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaag |
410 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || || ||||||| | ||||| |||| |||||||| ||| | |
|
|
| T |
9870231 |
tgttagatacttaaatatttccaatatatattatgagtgttccatatgaatgctatttttgctcgaatttgcgtccgttctttacagacgatcggttagg |
9870330 |
T |
 |
| Q |
411 |
ttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacc |
464 |
Q |
| |
|
|| | ||||||| || || ||||||||||||||| || ||||||||||||| |
|
|
| T |
9870331 |
ttgttatacacacaag-gaaattttctttggtaccttgagcctttcaagccacc |
9870383 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 213 - 485
Target Start/End: Original strand, 23843572 - 23843846
Alignment:
| Q |
213 |
gggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttg |
312 |
Q |
| |
|
||||||| ||| |||||| |||||| |||||| |||||||| ||||||||||||| ||| ||||| | |||||||||||||||| |||||||||||| |
|
|
| T |
23843572 |
gggcttgctagggaaggtgtttatagaatcacctactcttttccgaatagcataactagtgatattcataaccaaatatttccatatccattctaggttg |
23843671 |
T |
 |
| Q |
313 |
ttagatacttaaatacttccaatata--tattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaag |
410 |
Q |
| |
|
||||||||||||| || |||||| |||||||| || ||||||||||||||| | || |||||||||| ||| |||| |||| ||||||| ||| | |
|
|
| T |
23843672 |
caagatacttaaatatttataatatacatattatgactgttccatatgaatgctacttttgcttgaatttgcggttgttctttacaaacgatcggttagg |
23843771 |
T |
 |
| Q |
411 |
ttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacctcgttatacttttattatcct |
485 |
Q |
| |
|
|||||||||| ||||| |||||||||||| |||||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
23843772 |
ttatattacatacgaggcaatttttctttcatacctagagtctttcaagccaccctattatattcttattatcct |
23843846 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 15455602 - 15455504
Alignment:
| Q |
168 |
gtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcata |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| |||||||||||| || |||||||| |||||||||| |
|
|
| T |
15455602 |
gtggaggctagtttacccttacattcaagagcacgatactttttggggcttgctactgaaggtgcttataggatcatcatctcttttttgaatagcata |
15455504 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 267 - 404
Target Start/End: Complemental strand, 22571032 - 22570901
Alignment:
| Q |
267 |
accgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctat |
366 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||| |
|
|
| T |
22571032 |
accggtgagatttagagccatatatttccatatccattctaggttgttagatacttaaatactt------tccattatgagtgttccatatgaatgctat |
22570939 |
T |
 |
| Q |
367 |
tattacttgaatttgtggtcgttccttacggacgatcg |
404 |
Q |
| |
|
| | || ||||||| || | ||| ||||| ||||||| |
|
|
| T |
22570938 |
tttacctggaatttgcggccattctttacgaacgatcg |
22570901 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 11176537 - 11176600
Alignment:
| Q |
191 |
ttcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttt |
254 |
Q |
| |
|
||||||||||| ||||||| ||||||||| || |||||||||||||||||||| || ||||||| |
|
|
| T |
11176537 |
ttcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctctttt |
11176600 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 293
Target Start/End: Original strand, 22525511 - 22525632
Alignment:
| Q |
172 |
aggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccga |
271 |
Q |
| |
|
||||||| ||||| |||||||||| ||| ||||| | || ||||| || |||||||||||||| ||||||| ||||||| ||||||||||| | |
|
|
| T |
22525511 |
aggctaggttaccattacattcaaaagctcgataactattgaggcttactactgaaggtacttatataatcaccatctcttttctgaatagcataatcag |
22525610 |
T |
 |
| Q |
272 |
tgagattcagagccaaatattt |
293 |
Q |
| |
|
||||||| | |||||||||||| |
|
|
| T |
22525611 |
tgagatttatagccaaatattt |
22525632 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 147 - 485
Target Start/End: Complemental strand, 18828662 - 18828332
Alignment:
| Q |
147 |
tattcattcaaagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcacca |
246 |
Q |
| |
|
|||||||||||||||||||| | |||| ||||||||| ||||||||||||||||| | ||||| ||||||||| |||||||||||||||| |||| ||| |
|
|
| T |
18828662 |
tattcattcaaagcattttacggggagcctagtttactcttacattcaagagcacaagactttttggggcttgctagtgaaggtacttatgggataaccg |
18828563 |
T |
 |
| Q |
247 |
actctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatga |
346 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| |||||| ||||||||||| | ||||||||||||| |||||||| ||||||||| |
|
|
| T |
18828562 |
gta--------aatagcataaccggtaagattcagagccaaatattcccatattcattctaggttttcagatacttaaatatttccaatacatattatga |
18828471 |
T |
 |
| Q |
347 |
gtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacct |
446 |
Q |
| |
|
||| |||||||||||| ||| ||| |||||||||| ||||||| ||||||| |||| ||| ||||||||| ||| || ||||||||||| |||||| |
|
|
| T |
18828470 |
gtgttccatatgaatgttatcattgcttgaatttgatgtcgttctgtacggacaatcggttaggttatattagacagaaggaaatttttcttttgtacct |
18828371 |
T |
 |
| Q |
447 |
aaagtctttcaagccacctcgttatacttttattatcct |
485 |
Q |
| |
|
| || ||||||||||||| |||||| | |||||||||| |
|
|
| T |
18828370 |
agagcctttcaagccaccctgttatattcttattatcct |
18828332 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 6e-63; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 229 - 435
Target Start/End: Original strand, 34275372 - 34275578
Alignment:
| Q |
229 |
gtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatac |
328 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
34275372 |
gtacttataagatcaccatctcttttctgaatagcataaccggtgagattcagagccaaatatttccatatccattctaggttgttagatacttaaaaac |
34275471 |
T |
 |
| Q |
329 |
ttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagac |
428 |
Q |
| |
|
||||||| ||||| ||||||| ||||||||||||||||| || |||||||||| |||| ||| ||||||||||| ||||| ||||| ||||||| ||| |
|
|
| T |
34275472 |
ttccaatttatatcatgagtgttccatatgaatgctatttttgcttgaatttgcggtcattctttacggacgattgattaggttattatacacacatgac |
34275571 |
T |
 |
| Q |
429 |
aattttt |
435 |
Q |
| |
|
||||||| |
|
|
| T |
34275572 |
aattttt |
34275578 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 240 - 464
Target Start/End: Complemental strand, 19913768 - 19913545
Alignment:
| Q |
240 |
atcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatat |
339 |
Q |
| |
|
||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19913768 |
atcaccatctcttttctgaatagcataaccggtgagattcagagccaaatatttccatatccattctaggttgttagatacttaaatactt-aaatatat |
19913670 |
T |
 |
| Q |
340 |
attatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttcttt |
439 |
Q |
| |
|
||| | |||| ||||||| |||| |||| || |||||||||| |||||||| ||||| || ||| | |||||||| |||||||||| ||||||||| || |
|
|
| T |
19913669 |
attgtaagtgttccatataaatgttatttttgcttgaatttgcggtcgttctttacgaacaatcaactaagttattatacacacgagtcaatttttcatt |
19913570 |
T |
 |
| Q |
440 |
ggtacctaaagtctttcaagccacc |
464 |
Q |
| |
|
||||||| || ||||||||||||| |
|
|
| T |
19913569 |
ggtaccttgagcctttcaagccacc |
19913545 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 139 - 463
Target Start/End: Original strand, 12770029 - 12770348
Alignment:
| Q |
139 |
gtcttagttattcattc-aaagcattttaggtggaggctagtttaccctta--cattcaagagcacgatactttctggggcttgttagtgaaggtactta |
235 |
Q |
| |
|
||||||| |||||||| ||||||||| |||||||||||||||| | || | |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12770029 |
gtcttaggtattcattttaaagcatttacagtggaggctagtttacgcctattctttcaagagtttgatactttctggggcttgttagtgaaggtactta |
12770128 |
T |
 |
| Q |
236 |
taggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaat |
335 |
Q |
| |
|
|| ||| |||| || |||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| | |
|
|
| T |
12770129 |
taagat-accatctattttcaaaatagcataaccggtgagattcagagccaaatatttccatatccattctaggttcttagatacttaaatatttcta-- |
12770225 |
T |
 |
| Q |
336 |
atatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaattttt |
435 |
Q |
| |
|
|||||||||| ||||||||||||||||| | ||||||||| |||||||| |||||||| |||| ||| ||||| ||||||| |||| |||||| |
|
|
| T |
12770226 |
----attatgagtgttccatatgaatgctatttctgtttgaatttgcggtcgttctttacggacaatcggttaggttattatacacacaagac-attttt |
12770320 |
T |
 |
| Q |
436 |
ctttggtacctaaagtctttcaagccac |
463 |
Q |
| |
|
|||| |||||| || ||| |||||||| |
|
|
| T |
12770321 |
ctttagtaccttgagccttccaagccac |
12770348 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 172 - 341
Target Start/End: Original strand, 19166117 - 19166285
Alignment:
| Q |
172 |
aggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccga |
271 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| ||||||||| | |||||||||||||||||||| ||| ||||||| |||||||| ||||| |
|
|
| T |
19166117 |
aggctagtttacctttacattcaagagtgcgatacttt-tggggcttgctcgtgaaggtacttataggatcgccatctcttttatgaatagcacaaccgg |
19166215 |
T |
 |
| Q |
272 |
tgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatat |
341 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19166216 |
tgagattcatagccaaatatttccatatccattctaggttgttagatacttaaataattccaatatatat |
19166285 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 168 - 464
Target Start/End: Complemental strand, 17142610 - 17142323
Alignment:
| Q |
168 |
gtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataa |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||| || | || | |||||||||||| |||||||| || |||| |||||||||| |
|
|
| T |
17142610 |
gtggaggctagtttacccttacattcaagagcacgatagtttatgggactggctactaaaggtacttataagatcaccatcttttttctaaatagcataa |
17142511 |
T |
 |
| Q |
268 |
ccgatgagattcagagccaaatatttccatatacattctaggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctatt |
367 |
Q |
| |
|
||| ||||||| ||| ||||||||| || ||| || |||||||||||| ||||||||| ||| | || |||||||| ||||||||||||||||| |
|
|
| T |
17142510 |
ccgctgagatttggagtcaaatattttca-atatatcctaggttgttaggtacttaaattctt------tctactatgagtgttccatatgaatgctatt |
17142418 |
T |
 |
| Q |
368 |
attacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacc |
464 |
Q |
| |
|
|| || |||||||||||| ||| ||||||||||||||||| || || ||| ||||| || |||||||||||||||| || ||||||||||||| |
|
|
| T |
17142417 |
tttgctcgaatttgtggtcattctttacggacgatcgattatgt--taacacaaacgaggcattttttctttggtaccttgagcctttcaagccacc |
17142323 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 213 - 446
Target Start/End: Complemental strand, 13586804 - 13586571
Alignment:
| Q |
213 |
gggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcata-accgatgagattcagagccaaatatttccatatacattctaggtt |
311 |
Q |
| |
|
||||||| |||| || ||||||||||||||| |||||||||| |||||||||| || |||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
13586804 |
gggcttgctagtaaaagtacttataggatcaacaactcttttctgaatagcatatactgatgaggttcagagccaaatattttcatatccattctaggtt |
13586705 |
T |
 |
| Q |
312 |
gttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagt |
411 |
Q |
| |
|
|||||||||||| || ||| |||| ||||||||| || ||||||||||||||||| || ||||||||||| | ||||| |||| |||||| ||| || |
|
|
| T |
13586704 |
attagatacttaagtatttcaaatacatattatgaatgttccatatgaatgctatttttgcttgaatttgtagccgttctttacagacgataagttaggt |
13586605 |
T |
 |
| Q |
412 |
tatattacacacgagacaatttttctttggtacct |
446 |
Q |
| |
|
| | |||||||||| ||| ||||||||||||||| |
|
|
| T |
13586604 |
tgttatacacacgaggcaa-ttttctttggtacct |
13586571 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 207 - 337
Target Start/End: Complemental strand, 8766880 - 8766750
Alignment:
| Q |
207 |
tttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattct |
306 |
Q |
| |
|
||||| ||||||| |||| |||||| |||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
8766880 |
tttctagggcttgctagtaaaggtaattataggatcaccaactcttttctgaattgcataaccggtgagattcagagccaaatatttccatatccattct |
8766781 |
T |
 |
| Q |
307 |
aggttgttagatacttaaatacttccaatat |
337 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |
|
|
| T |
8766780 |
aggttgttagatacttaaatatttccaatat |
8766750 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 207 - 367
Target Start/End: Original strand, 19578076 - 19578236
Alignment:
| Q |
207 |
tttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattct |
306 |
Q |
| |
|
||||| ||||||| |||||||| |||| |||| |||||| |||||||| |||||| ||||| || ||| ||| | |||||||||||||||||| |||||| |
|
|
| T |
19578076 |
tttctagggcttgctagtgaagatactcatagtatcacctactcttttccgaatatcataatcggtgaaatttatagccaaatatttccatatccattct |
19578175 |
T |
 |
| Q |
307 |
aggttgttagatacttaaatacttccaatatatattatgagtgatccatatgaatgctatt |
367 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| |||| |
|
|
| T |
19578176 |
aggttgttagatacttaaatatttccaatacatattatgagtgttccatatgaatgttatt |
19578236 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 315 - 485
Target Start/End: Original strand, 8880396 - 8880566
Alignment:
| Q |
315 |
agatacttaaatacttccaatatatattatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttat |
414 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||| || ||||||||| ||||||| |||||||||| ||||||| ||| ||| ||||| ||| ||||| |
|
|
| T |
8880396 |
agatacttaaatatttccaatacatattatgagtgttcaatatgaatgttattatttcttgaatttgcggtcgttttttatggatgatcgcttaggttat |
8880495 |
T |
 |
| Q |
415 |
attacacacgagacaatttttctttggtacctaaagtctttcaagccacctcgttatacttttattatcct |
485 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| || ||||||||||||| ||||| | |||||||||| |
|
|
| T |
8880496 |
attacacacgagacaatatttctttggtacctagagcctttcaagccaccctattatattcttattatcct |
8880566 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 215 - 337
Target Start/End: Complemental strand, 8771755 - 8771633
Alignment:
| Q |
215 |
gcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgtt |
314 |
Q |
| |
|
||||| |||| |||||| |||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
8771755 |
gcttgctagtaaaggtaattataggatcaccaactcttttctgaattgcataaccggtgagattcagagccaaatatttccatatccattctaagttgtt |
8771656 |
T |
 |
| Q |
315 |
agatacttaaatacttccaatat |
337 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
8771655 |
agatacttaaatatttccaatat |
8771633 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 157 - 305
Target Start/End: Complemental strand, 16227306 - 16227158
Alignment:
| Q |
157 |
aagcattttaggtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttc |
256 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||| |||||||| || ||||| | |||||||||||||||||| ||||| ||||||| |
|
|
| T |
16227306 |
aagcatttacggtgaaggctagtttacccttacattcaagagcatgatactttttgaagcttgcttgtgaaggtacttataggaccaccatctcttttct |
16227207 |
T |
 |
| Q |
257 |
gaatagcataaccgatgagattcagagccaaatatttccatatacattc |
305 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||||| ||||| ||||| |
|
|
| T |
16227206 |
gaatagcataaccagtgagatttagagtcaaatattttcatatccattc |
16227158 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 334 - 464
Target Start/End: Original strand, 19166318 - 19166449
Alignment:
| Q |
334 |
atatatat-tatgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatt |
432 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||||| |||||||||||||||||||||| |||| |||||||| ||| ||||| |||||||||||||||| |
|
|
| T |
19166318 |
atatatatatatgagtgttccatatgaacactatttttacttgaatttgtggtcgttctttacagacgatcggttaggttattatacacacgagacaatt |
19166417 |
T |
 |
| Q |
433 |
tttctttggtacctaaagtctttcaagccacc |
464 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |
|
|
| T |
19166418 |
tttctttgctaccttgagtctttcaagccacc |
19166449 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 8878724 - 8878793
Alignment:
| Q |
247 |
actctttttcgaatagcataaccgatgagattcagagccaaatatttccatatacattctaggttgttag |
316 |
Q |
| |
|
||||| || ||||||| |||||| ||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8878724 |
actctgttccgaatagtataacctgtgagatttagagccaaatatttccatatccattctaggttgttag |
8878793 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 464
Target Start/End: Complemental strand, 8146907 - 8146798
Alignment:
| Q |
355 |
tatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctt |
454 |
Q |
| |
|
||||||||||||| || | |||||||| | | ||| |||||||||||| ||| ||||| |||||||||| |||||||||||||||| || || ||| |
|
|
| T |
8146907 |
tatgaatgctatttttgcatgaatttgagaccattctttacggacgatcagttaggttattatacacacgaggcaatttttctttggtaacttgagcctt |
8146808 |
T |
 |
| Q |
455 |
tcaagccacc |
464 |
Q |
| |
|
|||||||||| |
|
|
| T |
8146807 |
tcaagccacc |
8146798 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 13586902 - 13586840
Alignment:
| Q |
139 |
gtcttagttattcattcaaagcattttaggtggaggctagtttacccttacattcaagagcac |
201 |
Q |
| |
|
||||||| ||||||||||||||||| ||| |||||||||||| || ||||||||||||||| |
|
|
| T |
13586902 |
gtcttaggtattcattcaaagcattaaaggcagaggctagtttatccatacattcaagagcac |
13586840 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 430
Target Start/End: Original strand, 20315379 - 20315464
Alignment:
| Q |
344 |
tgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgagacaa |
430 |
Q |
| |
|
|||||| |||||||||||| | || ||||| ||||||||||||| || ||| |||| |||||| | |||||| |||||||||||||| |
|
|
| T |
20315379 |
tgagtgttccatatgaatgttttt-ttactcgaatttgtggtcgctctttatggactatcgatcatgttatactacacacgagacaa |
20315464 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 8766960 - 8766897
Alignment:
| Q |
139 |
gtcttagttattcatt-caaagcattttaggtggaggctagtttacccttacattcaagagcac |
201 |
Q |
| |
|
||||||| |||||||| |||||||||| ||| |||||||||||| || ||||||||||||||| |
|
|
| T |
8766960 |
gtcttaggtattcatttcaaagcatttaaggcagaggctagtttatccatacattcaagagcac |
8766897 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 8771843 - 8771780
Alignment:
| Q |
139 |
gtcttagttattcatt-caaagcattttaggtggaggctagtttacccttacattcaagagcac |
201 |
Q |
| |
|
||||||| |||||||| |||||||||| ||| |||||||||||| || ||||||||||||||| |
|
|
| T |
8771843 |
gtcttaggtattcatttcaaagcatttaaggcagaggctagtttatccatacattcaagagcac |
8771780 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 426
Target Start/End: Original strand, 20337270 - 20337351
Alignment:
| Q |
344 |
tgagtgatccatatgaatgctattattacttgaatttgtggtcgttccttacggacgatcgattaagttatattacacacgag |
426 |
Q |
| |
|
|||||| |||||||||||| | || ||||| ||||||||||||| || ||| |||| |||||| | |||||| |||||||||| |
|
|
| T |
20337270 |
tgagtgttccatatgaatgttttt-ttactcgaatttgtggtcgctctttatggactatcgatcatgttatactacacacgag |
20337351 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 39448 - 39384
Alignment:
| Q |
169 |
tggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtact |
233 |
Q |
| |
|
||||||||||||||| ||||||||||| | || |||| || ||||||||| || |||||||||| |
|
|
| T |
39448 |
tggaggctagtttactcttacattcaacaacaggataacttttggggcttgctactgaaggtact |
39384 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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