View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18484_high_7 (Length: 368)
Name: NF18484_high_7
Description: NF18484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18484_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 25 - 350
Target Start/End: Original strand, 54658063 - 54658410
Alignment:
| Q |
25 |
acctacctgttagttgtcgttgctggccagtgacatagtgccacgagctattacgtgattgtcacagatttaaaaaccgatcatccactgtttgttttaa |
124 |
Q |
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| T |
54658063 |
acctacctgttagttgtcgttgctagccagtgacatagtgccacgagctattacgtgattgtcacaaatttaaaaaccgatcatccactgtttgttttaa |
54658162 |
T |
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| Q |
125 |
atctaattgctggtttgcagttgcagcgagccccacaggcaggctccaccatcgtttacgtcatgtc-atgtctcactcaaacctcctacctcaaacaaa |
223 |
Q |
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| T |
54658163 |
atctaattgctggtttgcagttgcagcgagccccacagccaggctccaccatcgtttacgtcatgtcaatgtctcactcaaacctcctacctcaaacaaa |
54658262 |
T |
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| Q |
224 |
ataacattattc---cttccatct-----atctatccattctagcagcattcatatact----aaccagtattattatattatcaatcact------cac |
305 |
Q |
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| T |
54658263 |
ataacattattcattattccatctatctaatctatccattctagcagtattcatatactaaccaaccagtattattatattatcaatcactcacacacac |
54658362 |
T |
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| Q |
306 |
acacactgtcacac---ataattaacaaaacaaaataggtttgtcttc |
350 |
Q |
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| T |
54658363 |
acacactgtcacacataataattaacaaaacaaaataggtttgtcttc |
54658410 |
T |
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