View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18484_high_9 (Length: 348)
Name: NF18484_high_9
Description: NF18484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18484_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 37548696 - 37549016
Alignment:
| Q |
19 |
ttaagatcactttcgtgggttttggtttccatttgcaattttgttgtgtatttagttgaatttgaagtgttttggcttttcaatgagaattaataaaagc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37548696 |
ttaagatcactttcgtgggttttggtttccatttgcaattttgttgtgtatttagctgaatttgaagtgttttggcttttcaatgagaattaataaaagc |
37548795 |
T |
|
| Q |
119 |
aaaatnnnnnnngaaggcttgaattgaagcttatttcttcctctctatttcaatcctgttagaaaattcatgctatttgctgttaccatgtttataagaa |
218 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37548796 |
aaaataaaaaaagaaggcttgaattgaagcttatttcttcctctctatttcaatcctgttagaaaattcatgctatttgctgttaccatgtttataagaa |
37548895 |
T |
|
| Q |
219 |
attaatgattcaatgtgccaactgcaaggcaatgagagttttgattcaatgttttatgttgtaattcctagatagttaagggaattcatcaaggataggt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37548896 |
attaatgattcaatgtgccaactgcaaggcaatgagagttttgattcaatgttttttgttgtaattcctagatagttaagggaattcatcaaggataggt |
37548995 |
T |
|
| Q |
319 |
ttgtttgttctgtcttcattt |
339 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
37548996 |
ttgtttgttctgtcttcattt |
37549016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University