View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18484_low_12 (Length: 319)

Name: NF18484_low_12
Description: NF18484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18484_low_12
NF18484_low_12
[»] chr4 (1 HSPs)
chr4 (1-296)||(24624169-24624466)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 24624169 - 24624466
Alignment:
Q  1 agctagttcttcaagggcacgtgcacaagaaccattttatcctttaaaattcgaaggtacttaccaacaagaacaatgcagagagttggtggagcgggaa 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||    
T  24624169 agctagttcttcaagggcacgcgcacaagaaccattttatcctttaaaattcaaaggtacttaccaacaagaacaatgcagaacgttggtggagcgggaa 24624268  T
Q  101 atgtgggtggagaaggaattctgaatcaaagaaaaaggaccgtatatgggcatag--caaataatccacaccaggaattgggataagttggtagatcttc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  24624269 atgtgggtggagaaggaattctgaatcaaagaaaaaggaccgtgtatgggcatagcacaaataatctacaccaggaattgggataagttggtagatcttc 24624368  T
Q  199 ccaagcttctaaataatgatgtgatccgggagatatatgtcaatgctcttccatccgatgatgaacccttttctttcaccaatgtggttcgtggacga 296  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24624369 ccaagcttctaaataatgatgtaatccgggagatatatgtcaatgctcttccatccgatgatgaacccttttctttcaccaatgtggttcgtggacga 24624466  T

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