View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18484_low_18 (Length: 250)
Name: NF18484_low_18
Description: NF18484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18484_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 77 - 247
Target Start/End: Original strand, 15182460 - 15182631
Alignment:
| Q |
77 |
aaactataggtgtgtataaattaaaaccatataataatatgatattatagtgcatttatttttattaaagggcgagagtccaatatgatagtgtga-nnn |
175 |
Q |
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| T |
15182460 |
aaactataggtgtgtataaattaaaatcatataataatatgatattatagtgtttttttttttattaaagggcgagagtccaatatgatagtgtgatttt |
15182559 |
T |
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| Q |
176 |
nnnnnnaaatagtctaatagctgaagctcgcatatttcaaatgtggagaagtagagagtctagggttcaaac |
247 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15182560 |
ttttttaaatagtctaatagctgaagctcgcacatttcaaatgtggagaagtagagagtctagggttcaaac |
15182631 |
T |
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