View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18484_low_2 (Length: 676)

Name: NF18484_low_2
Description: NF18484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18484_low_2
NF18484_low_2
[»] chr4 (5 HSPs)
chr4 (95-666)||(24623451-24624039)
chr4 (1-98)||(24624061-24624158)
chr4 (1-98)||(9439125-9439222)
chr4 (593-666)||(46628163-46628235)
chr4 (157-213)||(9438821-9438877)
[»] chr2 (3 HSPs)
chr2 (547-659)||(9750028-9750143)
chr2 (513-666)||(9009215-9009371)
chr2 (424-481)||(29980708-29980765)
[»] chr7 (1 HSPs)
chr7 (53-94)||(11295117-11295158)
[»] chr8 (1 HSPs)
chr8 (355-423)||(16588033-16588101)


Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 95 - 666
Target Start/End: Complemental strand, 24624039 - 24623451
Alignment:
Q  95 accatttcatgtgttctt-atatagctccaacataaatgaaaatcttcataaagaggaactaaggatgaatgtgaaggttgttagcgcgtacttcagaat 193  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24624039 accatttcatgggttctttatatagctccaacataaatgaaaatcttcataaagaggaattaaggatgaatgtgaaggttgttagcgcgtacttcagaat 24623940  T
Q  194 ttgatagattattttcttcannnnnnnncttctttttggttatatttaattccctgctatatatcactagtacactatgctagttctaatatgttgcatt 293  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24623939 ttgatagattattttcttcattttttttcttctttttggttatatttaattccctgctatatatcactagtacactatgctagttctaatatgttgcatt 24623840  T
Q  294 annnnnnnnc------aattcaacttctgtatatt---tagcacagnnnnnnnctctttcaattcggttattaatgtcatcaatcatggcttgtcgttta 384  Q
    |        |      |||||||||||||||||||   |||| | |        ||||||||||||||||||||||||||||||||||||||||||||||    
T  24623839 attttttttctttttcaattcaacttctgtatattagatagcgctgtttttttttctttcaattcggttattaatgtcatcaatcatggcttgtcgttta 24623740  T
Q  385 ttctcacttcacgacattgcttatcaagaggtaagtttcaatttctaactaatgatattgctattaaacttgcacatgattgtaatggcttcatacagga 484  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24623739 ttctcacttcacgacattgcttatcaagaggtaaatttcaatttctaactaatgatattgctattaaacttgcacatgattgtaatggcttcatacagga 24623640  T
Q  485 tctagaatagatattaatctaatttaatttaatgatattgctatagtaattagtctaagatattggtctgttcaactaaaacattattaaccgaaactga 584  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24623639 tctataatagaaattaatctaatttaatttaatgatattgctatagtacttagtctaagatattggcctgttcaactaaaacattattaaccgaaactga 24623540  T
Q  585 aacattat-------taaccttgttaggttttagttgatctttatgtcaagtcagtagcctgcttgagaaattttgcctcttgcctatg 666  Q
    |||| |||       |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24623539 aacaatataaatagataaccttgttagtttttagctgatctttatgtcaagtcagtagcctgcttgagaaattttgcctcttgactatg 24623451  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 24624158 - 24624061
Alignment:
Q  1 ttttcaccttggacatacaagaagtcttagatacttctgatgaggaaataatttgctattttctgatttatgagcctgttatcatggggtgagtacca 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24624158 ttttcaccttggacatacaagaagtcttagatacttctgatgaggaaataatttgctattttctgatttatgagcctgttatcatggggtaagtacca 24624061  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 9439222 - 9439125
Alignment:
Q  1 ttttcaccttggacatacaagaagtcttagatacttctgatgaggaaataatttgctattttctgatttatgagcctgttatcatggggtgagtacca 98  Q
    |||||||||||||||||||||| ||||| || ||||||||||| ||| |||||||| || ||||||||||  ||||| |||| ||| |||||||||||    
T  9439222 ttttcaccttggacatacaagaggtcttggacacttctgatgacgaagtaatttgcaatgttctgatttactagcctattataatgaggtgagtacca 9439125  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 593 - 666
Target Start/End: Complemental strand, 46628235 - 46628163
Alignment:
Q  593 taaccttgttaggttttagttgatctttatgtcaagtcagtagcctgcttgagaaattttgcctcttgcctatg 666  Q
    |||||||||||| |||||  ||||||||||||||||||||||| ||||||||||||| |||||||||| |||||    
T  46628235 taaccttgttag-ttttaactgatctttatgtcaagtcagtagtctgcttgagaaatcttgcctcttgtctatg 46628163  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 9438877 - 9438821
Alignment:
Q  157 ggatgaatgtgaaggttgttagcgcgtacttcagaatttgatagattattttcttca 213  Q
    |||||||||| | |||||||||||  | ||||| ||||||||||||| |||||||||    
T  9438877 ggatgaatgtaacggttgttagcgatttcttcataatttgatagattcttttcttca 9438821  T

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Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 547 - 659
Target Start/End: Original strand, 9750028 - 9750143
Alignment:
Q  547 ttggtctgttcaactaaaacattattaaccgaaactgaaacattat---taaccttgttaggttttagttgatctttatgtcaagtcagtagcctgcttg 643  Q
    |||| |||||| |||| |||||||||||| ||||| |||||| |||   |||||||||||| |||||  |||||||| |||||||||||||| |||||||    
T  9750028 ttggactgttccactagaacattattaactgaaaccgaaacaatataaataaccttgttagtttttaactgatctttttgtcaagtcagtagtctgcttg 9750127  T
Q  644 agaaattttgcctctt 659  Q
    |||||| |||||||||    
T  9750128 agaaatcttgcctctt 9750143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 513 - 666
Target Start/End: Original strand, 9009215 - 9009371
Alignment:
Q  513 ttaatgatattgctatagtaattagtctaagatattggtctgttcaactaaaacattattaaccgaaactgaaacattat---taaccttgttaggtttt 609  Q
    |||||||||||| ||||    ||||||||||||||||  |||||| |||||||||||||| ||   |||||||||| |||   ||||||| |||| | ||    
T  9009215 ttaatgatattgttataaagcttagtctaagatattgcactgttccactaaaacattatttactacaactgaaacaatatgaataaccttcttagttctt 9009314  T
Q  610 agttgatctttatgtcaagtcagtagcctgcttgagaaattttgcctcttgcctatg 666  Q
    |  ||||||| | |||||||||||||  |||||||||||| |||||||||| |||||    
T  9009315 aactgatcttaaagtcaagtcagtagtttgcttgagaaatcttgcctcttgtctatg 9009371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 481
Target Start/End: Complemental strand, 29980765 - 29980708
Alignment:
Q  424 aatttctaactaatgatattgctattaaacttgcacatgattgtaatggcttcataca 481  Q
    ||||||||||||||||||||| ||| ||||||| |||| | |||||||| ||||||||    
T  29980765 aatttctaactaatgatattgttataaaacttggacattactgtaatggtttcataca 29980708  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 11295158 - 11295117
Alignment:
Q  53 ttgctattttctgatttatgagcctgttatcatggggtgagt 94  Q
    ||||||| |||||||||||||||||||||| ||| |||||||    
T  11295158 ttgctatgttctgatttatgagcctgttataatgaggtgagt 11295117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 355 - 423
Target Start/End: Complemental strand, 16588101 - 16588033
Alignment:
Q  355 ttaatgtcatcaatcatggcttgtcgtttattctcacttcacgacattgcttatcaagaggtaagtttc 423  Q
    ||||||||||| ||||| |||| | || |  ||||||||||||| |||||||| |||||||||| ||||    
T  16588101 ttaatgtcatctatcattgcttattgtgtcgtctcacttcacgatattgcttaccaagaggtaaatttc 16588033  T

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