View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18484_low_6 (Length: 421)
Name: NF18484_low_6
Description: NF18484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18484_low_6 |
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| [»] scaffold0229 (1 HSPs) |
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| [»] scaffold0157 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 77 - 387
Target Start/End: Complemental strand, 12474193 - 12473883
Alignment:
| Q |
77 |
acatttcacaggatctaagtgatgcttgaggaagtttgcatcttgcttgtttggagtttatgtttggttgattgacaatgtgtactttctttcctttgga |
176 |
Q |
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|||||||| |||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12474193 |
acatttcataggatctaagtgatgcttgaggaaattttcatcttgcttgtctggagtttatgtttggttgattgacaatgtgtactttctttcctttgga |
12474094 |
T |
|
| Q |
177 |
attatgtttacctttctctatttatgttacatcaaggaaacaaagatttatctattatgttttggtacttactttacggagtcattttgagatgttgtga |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12474093 |
attatgtttacctttctctatttatgttacatcaaggaaacaaggatttacctattatgttttggtacttactttgtggagtcattttgagatgttgtag |
12473994 |
T |
|
| Q |
277 |
gatgactcgcgtgtttgagaaaattgatcctaaaacctttatttagtcattcttattattatgttttgtgtgatttgtatgtgaagaaatgtgatatcct |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12473993 |
gatgactcgcgtgtttgagaaaattgatcctaaaacctttatttagtcattcttattactatgttttgtgtgatttgtatgtgaagaaatgtgatatcct |
12473894 |
T |
|
| Q |
377 |
aaacctacccg |
387 |
Q |
| |
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||||||||||| |
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| T |
12473893 |
aaacctacccg |
12473883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 77 - 387
Target Start/End: Complemental strand, 12528602 - 12528292
Alignment:
| Q |
77 |
acatttcacaggatctaagtgatgcttgaggaagtttgcatcttgcttgtttggagtttatgtttggttgattgacaatgtgtactttctttcctttgga |
176 |
Q |
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|||||||| |||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12528602 |
acatttcataggatctaagtgatgcttgaggaaattttcatcttgcttgtctggagtttatgtttggttgattgacaatgtgtactttctttcctttgga |
12528503 |
T |
|
| Q |
177 |
attatgtttacctttctctatttatgttacatcaaggaaacaaagatttatctattatgttttggtacttactttacggagtcattttgagatgttgtga |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12528502 |
attatgtttacctttctctatttatgttacatcaaggaaacaaggatttacctattatgttttggtacttactttgtggagtcattttgagatgttgtag |
12528403 |
T |
|
| Q |
277 |
gatgactcgcgtgtttgagaaaattgatcctaaaacctttatttagtcattcttattattatgttttgtgtgatttgtatgtgaagaaatgtgatatcct |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12528402 |
gatgactcgcgtgtttgagaaaattgatcctaaaacctttatttagtcattcttattactatgttttgtgtgatttgtatgtgaagaaatgtgatatcct |
12528303 |
T |
|
| Q |
377 |
aaacctacccg |
387 |
Q |
| |
|
||||||||||| |
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|
| T |
12528302 |
aaacctacccg |
12528292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 4 - 278
Target Start/End: Complemental strand, 12464446 - 12464174
Alignment:
| Q |
4 |
ttattgttataaatcatgtaccacgattactcgtccactcattaattgtgtttatgcatttgcaatgttgcagacatttcacaggatctaagtgatgctt |
103 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||| ||||||||| |
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| T |
12464446 |
ttattgttataaatcatgtaacacgattactcgtccactcattaattgtgtctatgcgtttgggatgttgcagacatttcacagaatctaggtgatgctt |
12464347 |
T |
|
| Q |
104 |
gaggaagtttgcatcttgcttgtttggagtttatgtttggttgattgacaatgtgtactttctttcctttggaattatgtttacctttctctatttatgt |
203 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| | ||| |||||||||||| |
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| T |
12464346 |
gaggaagtttgcatcttgcttgtctggagtttatgtttgg-tgattagcaatgtgtactttctttcctttagaattatgtatttcttgctctatttatgt |
12464248 |
T |
|
| Q |
204 |
tacatcaaggaaacaaagatttatctattatgttttggtacttactttacggagtcattttgagatgttgtgaga |
278 |
Q |
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|
||||||| || | || || |||||| ||||||||| ||||||| ||| ||||||||||||||||||||||||| |
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| T |
12464247 |
tacatcaggggaggaagga-ttatcttttatgttttagtacttattttgtggagtcattttgagatgttgtgaga |
12464174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 12483018 - 12482936
Alignment:
| Q |
1 |
aatttattgttataaatcatgtaccacgattactcgtccactcattaa-ttgtgtttatgcatttgcaatgttgcagacattt |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||||||||| |
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| T |
12483018 |
aatttattgttataaatcatgtaccacgattactcgtccactcattaatttgtgtttatgcgtttccgatgttgcagacattt |
12482936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 323 - 378
Target Start/End: Complemental strand, 12464143 - 12464088
Alignment:
| Q |
323 |
tcattcttattattatgttttgtgtgatttgtatgtgaagaaatgtgatatcctaa |
378 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12464143 |
tcattcttcttaatatgttttgtgtgatttgtatgtgaagaaaggtgatatcctaa |
12464088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Complemental strand, 12473700 - 12473672
Alignment:
| Q |
385 |
ccgcttaagatatggtagtcattcatctc |
413 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
12473700 |
ccgcttaagatatggtagtcattcatctc |
12473672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Complemental strand, 12528109 - 12528081
Alignment:
| Q |
385 |
ccgcttaagatatggtagtcattcatctc |
413 |
Q |
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|
||||||||||||||||||||||||||||| |
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| T |
12528109 |
ccgcttaagatatggtagtcattcatctc |
12528081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 77 - 387
Target Start/End: Original strand, 12685 - 12997
Alignment:
| Q |
77 |
acatttcacaggatctaagtgatgcttgaggaagtttgcatcttgcttgtttggagtttatgtttggttgattgacaatgtgtactttctttcctttgga |
176 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12685 |
acatttcataggatctaagtgatgcttgaggaaattttcatcttgcttgtctggagtttatgtttggttgattgacaatgtgtactttctttcctttgga |
12784 |
T |
|
| Q |
177 |
attatgtttacctttctctatttatgttacatcaaggaaacaaagatttatctattatgttttggtacttactttacggagtcattttg-agatgttgtg |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
12785 |
attatgtttacctttctctatttatgttacatcaaggaaacaaggatttacctattatgttttggtacttactttgtggagtcattttgtagatgttgta |
12884 |
T |
|
| Q |
276 |
agatgactcgcgtgtttgagaaaattgatcctaaaaccttt-atttagtcattcttattattatgttttgtgtgatttgtatgtgaagaaatgtgatatc |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12885 |
ggatgactcgcgtgtttgagaaaattgatcctaaaacctttaatttagtcattcttattactatgttttgtgtgatttgtatgtgaagaaatgtgatatc |
12984 |
T |
|
| Q |
375 |
ctaaacctacccg |
387 |
Q |
| |
|
||||||||||||| |
|
|
| T |
12985 |
ctaaacctacccg |
12997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 37459 - 37541
Alignment:
| Q |
1 |
aatttattgttataaatcatgtaccacgattactcgtccactcattaa-ttgtgtttatgcatttgcaatgttgcagacattt |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||||||||| |
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|
| T |
37459 |
aatttattgttataaatcatgtaccacgattactcgtccactcattaatttgtgtttatgcgtttccgatgttgcagacattt |
37541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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