View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18484_low_7 (Length: 397)
Name: NF18484_low_7
Description: NF18484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18484_low_7 |
 | |
|
| [»] scaffold0157 (2 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: scaffold0157 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 201 - 397
Target Start/End: Original strand, 37289 - 37486
Alignment:
| Q |
201 |
gacttgtgttacgaccattggtaaataagaagtatatctatttaattgtgatgtgtgcaaatttcctatctgaactgtgtcttattttatgctatgaaca |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
37289 |
gacttgtgttacgaccaatggtaaataagaagtatatctagttaattgtgatgtgtgcaaattttctatctgaaccgtgtcttattttatgctatgaaca |
37388 |
T |
|
| Q |
301 |
ttataccttttcagtgtcataatctaagcattgttttcctatgtgtata-ttttttccatttttgtcctgaatttattgctataaatcatgtaccacg |
397 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37389 |
ttatactttttcagtgtcataatctatgcatggttttcttatgtgtatatttttttccatttttgtcctgaatttattgttataaatcatgtaccacg |
37486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 36958 - 37129
Alignment:
| Q |
21 |
aaaagagtatttttaagttgtgtttgattatgtggtgctgataattgattttgaattacttgagtttagttatataaatatatannnnnnnnnnnnnnnn |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36958 |
aaaagagtatttttaaattgtgtttgattatgtggtgctgataattgattttgaattacttgagtttagttatataaatata---atttttatgattctt |
37054 |
T |
|
| Q |
121 |
nnatgttatgctatgaatgtctgagttataactttctcatgttgaaaattactttatttttgaattagttgcattt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
37055 |
ttatgttatgctatgaatgtctgagttataactttctcatgttgaaatttacttta-ttttgaattagttgcattt |
37129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 201 - 397
Target Start/End: Complemental strand, 12483188 - 12482991
Alignment:
| Q |
201 |
gacttgtgttacgaccattggtaaataagaagtatatctatttaattgtgatgtgtgcaaatttcctatctgaactgtgtcttattttatgctatgaaca |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
12483188 |
gacttgtgttacgaccaatggtaaataagaagtatatctagttaattgtgatgtgtgcaaattttctatctgaaccgtgtcttattttatgctatgaaca |
12483089 |
T |
|
| Q |
301 |
ttataccttttcagtgtcataatctaagcattgttttcctatgtgtatatt-ttttccatttttgtcctgaatttattgctataaatcatgtaccacg |
397 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12483088 |
ttatactttttcagtgtcataatctatgcatggttttcttatgtgtatatttttttccatttttgtcctgaatttattgttataaatcatgtaccacg |
12482991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 12483519 - 12483348
Alignment:
| Q |
21 |
aaaagagtatttttaagttgtgtttgattatgtggtgctgataattgattttgaattacttgagtttagttatataaatatatannnnnnnnnnnnnnnn |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12483519 |
aaaagagtatttttaaattgtgtttgattatgtggtgctgataattgattttgaattacttgagtttagttatataaatata---atttttatgattctt |
12483423 |
T |
|
| Q |
121 |
nnatgttatgctatgaatgtctgagttataactttctcatgttgaaaattactttatttttgaattagttgcattt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
12483422 |
ttatgttatgctatgaatgtctgagttataactttctcatgttgaaatttacttta-ttttgaattagttgcattt |
12483348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 254 - 397
Target Start/End: Complemental strand, 12464565 - 12464422
Alignment:
| Q |
254 |
tgtgcaaatttcctatctgaactgtgtcttattttatgctatgaacattataccttttcagtgtcataatctaagcattgttttcctatgtgtatatttt |
353 |
Q |
| |
|
|||||||||||||||| |||| ||||| || |||| ||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12464565 |
tgtgcaaatttcctatatgaattgtgttttcttttgtgctatgaacattatactattttagtgtcataatctatgcattgttttcctatgtgtatatttt |
12464466 |
T |
|
| Q |
354 |
ttccatttttgtcctgaatttattgctataaatcatgtaccacg |
397 |
Q |
| |
|
||||| |||||||||||| |||||| ||||||||||||| |||| |
|
|
| T |
12464465 |
ttccacttttgtcctgaaattattgttataaatcatgtaacacg |
12464422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 12464827 - 12464746
Alignment:
| Q |
21 |
aaaagagtatttttaagttgtgtttgattatgtggtgctgataattgattttgaattacttgagtttagttatataaatata |
102 |
Q |
| |
|
|||| ||||||||||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12464827 |
aaaatagtatttttaaattaggtttgattatgtggtgctgagaattgattttgaattagttgagtttagttatataaatata |
12464746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University