View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18484_low_9 (Length: 364)
Name: NF18484_low_9
Description: NF18484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18484_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 103 - 216
Target Start/End: Original strand, 47618773 - 47618886
Alignment:
| Q |
103 |
tggtgcaaatatttgatgacaccataaccttctaccaatttacaaattggagccaaccaaccaaatgtgtttgtttgttcagccccaacaaaaaccctca |
202 |
Q |
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| T |
47618773 |
tggtgcaaatatttgatgacagcataaccttctaccaatttacaaattggagccaaccaaccaaatgtgtttgtttgttcagccccaacaaaaaccctca |
47618872 |
T |
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| Q |
203 |
agaaaatctgcaca |
216 |
Q |
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| T |
47618873 |
agaaaatctgcaca |
47618886 |
T |
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Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 47618945 - 47619021
Alignment:
| Q |
274 |
gcatatatctagaatgagaaccaccctccctctgtacnnnnnnngaaagaaaagcagaacatatttatgatgtatgt |
350 |
Q |
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| T |
47618945 |
gcatatatctagaatgagaaccaccctccctctgtacaaaaaaagaaagaaaagcagaacatatttatgatgtatgt |
47619021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 47618682 - 47618730
Alignment:
| Q |
12 |
atgagatgaatagctcctcggagagacagttccacatccaatccaattg |
60 |
Q |
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| T |
47618682 |
atgaaatgaatagctcctcggagagacagttccacatccaatccaattg |
47618730 |
T |
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