View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18485_high_14 (Length: 245)
Name: NF18485_high_14
Description: NF18485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18485_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 6858466 - 6858229
Alignment:
| Q |
1 |
tttcacaattttcttgtctgtggtattcatgatgtgtgctttttgtgctgcacttgctctcatgctcaaggggtaccgatggatcataaaagcagcaata |
100 |
Q |
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| T |
6858466 |
tttcacaattttcttgtctgtggtattcatgatgtgtgctttttgtgctgcacttgctctcatgctcaaggggtaccgatggatcataaaagcagcaata |
6858367 |
T |
|
| Q |
101 |
gtatcttcaattattccaatcttagtgtttattttcacgctcttgcgattatttttagaggtttgcacttcttttgtaaaatcttgtttcctcggaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6858366 |
gtatcttcaattattccaatcttagtgtttatgttcacgctcttgcgactatttttagaggtttgcacttcttttgtaaaatcttgtttcctcggaaaga |
6858267 |
T |
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| Q |
201 |
aacaaaaatttataagacggttgtgttgctgatgatgt |
238 |
Q |
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| T |
6858266 |
aacaaaaatttataagacggttgtgttacttatgatgt |
6858229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 6106358 - 6106532
Alignment:
| Q |
1 |
tttcacaattttcttgtctgtggtattcatgatgtgtgctttttgtgctgcacttgctctcatgctcaaggggtaccgatggatcataaaagcagcaata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||| | |||||||| |
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| T |
6106358 |
tttcacaattttcttgtctgtggtattcatgatgtgttctttttgctctgcacttgctcttatgctcaaggggtaccgatggatcataataacagcaata |
6106457 |
T |
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| Q |
101 |
gtatcttcaattattccaatcttagtgtttattttcacgctcttgcgattatttttagaggtttgcacttctttt |
175 |
Q |
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| T |
6106458 |
gcatcttcagttattccaatcttagtgtttatgttttcgctattgcgcctcttttcagaggtttgcatttctttt |
6106532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 6129545 - 6129315
Alignment:
| Q |
1 |
tttcacaattttcttgtctgtggtattcatgatgtgtgctttttgtgctgcacttgctctcatgctcaaggggtaccgatggatcataaaagcagcaata |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||| ||| |||||||||| |
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| T |
6129545 |
tttcaccattttcttgtctgtggtattcatgatgtgtgctttttgctctgcacttgctctcatgctaaaggggtaccgctggatcgtaatagcagcaata |
6129446 |
T |
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| Q |
101 |
gtatcttcaattattccaatcttagtgtttattttcacgctcttgcgattatttttagaggtttgcacttcttttgtaaaatcttgtttcctc---ggaa |
197 |
Q |
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||||||| |||||||||| ||||||||||| || |||||||| || | |||| |||||||||| ||||||||| |||||| ||||||| || | |
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| T |
6129445 |
tcatcttcagttattccaatattagtgtttatgttgacgctcttacgcattttttcagaggtttgcgtttcttttgtgcaatcttatttcctccttggga |
6129346 |
T |
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| Q |
198 |
agaaacaaaaatttataagacggttgtgttg |
228 |
Q |
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|||||||||||| |||| | |||||||||| |
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| T |
6129345 |
agaaacaaaaataaataatatggttgtgttg |
6129315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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