View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18485_high_2 (Length: 714)

Name: NF18485_high_2
Description: NF18485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18485_high_2
NF18485_high_2
[»] chr2 (15 HSPs)
chr2 (398-698)||(44583042-44583343)
chr2 (13-309)||(44583344-44583640)
chr2 (150-239)||(36887618-36887708)
chr2 (151-215)||(34234871-34234935)
chr2 (159-226)||(13022786-13022853)
chr2 (161-240)||(40999675-40999754)
chr2 (160-235)||(44887293-44887368)
chr2 (159-235)||(6459074-6459150)
chr2 (161-213)||(26297112-26297164)
chr2 (159-269)||(28857070-28857183)
chr2 (156-213)||(65468-65525)
chr2 (163-248)||(34820919-34821004)
chr2 (160-274)||(32887618-32887730)
chr2 (178-235)||(18970010-18970067)
chr2 (82-139)||(34374930-34374986)
[»] chr4 (14 HSPs)
chr4 (138-269)||(12447391-12447523)
chr4 (159-245)||(30865886-30865972)
chr4 (156-231)||(39055154-39055229)
chr4 (159-248)||(2396293-2396382)
chr4 (158-247)||(10180655-10180743)
chr4 (160-235)||(2574102-2574177)
chr4 (160-215)||(35332056-35332111)
chr4 (160-239)||(49211023-49211102)
chr4 (160-231)||(23359098-23359169)
chr4 (186-277)||(26699028-26699119)
chr4 (160-231)||(39629250-39629321)
chr4 (160-215)||(44500489-44500544)
chr4 (160-213)||(822454-822507)
chr4 (159-216)||(24030620-24030677)
[»] chr8 (28 HSPs)
chr8 (160-277)||(23036790-23036907)
chr8 (160-274)||(6519058-6519170)
chr8 (159-235)||(3628224-3628300)
chr8 (160-235)||(11777720-11777795)
chr8 (82-162)||(9133700-9133781)
chr8 (160-277)||(9604513-9604630)
chr8 (160-249)||(28540667-28540756)
chr8 (160-231)||(2603129-2603200)
chr8 (160-231)||(9134147-9134218)
chr8 (159-233)||(35973441-35973515)
chr8 (150-215)||(18806641-18806706)
chr8 (159-235)||(36316757-36316832)
chr8 (160-215)||(10954145-10954200)
chr8 (160-215)||(10962150-10962205)
chr8 (160-230)||(5139733-5139803)
chr8 (159-216)||(23982239-23982296)
chr8 (162-248)||(4797273-4797360)
chr8 (159-214)||(5569223-5569278)
chr8 (161-216)||(6427174-6427229)
chr8 (160-231)||(16531626-16531697)
chr8 (160-215)||(31226542-31226597)
chr8 (86-137)||(37673950-37674001)
chr8 (158-212)||(38937786-38937840)
chr8 (186-235)||(7288244-7288293)
chr8 (159-212)||(13629113-13629166)
chr8 (159-212)||(13729525-13729578)
chr8 (160-205)||(28567803-28567848)
chr8 (160-205)||(28575396-28575441)
[»] chr3 (13 HSPs)
chr3 (160-235)||(36902376-36902451)
chr3 (158-232)||(41211978-41212051)
chr3 (160-277)||(30595092-30595209)
chr3 (159-213)||(3993567-3993620)
chr3 (159-248)||(33831980-33832069)
chr3 (159-215)||(19900204-19900260)
chr3 (159-215)||(47075620-47075676)
chr3 (159-235)||(54422720-54422795)
chr3 (160-211)||(55272804-55272855)
chr3 (159-213)||(3973471-3973524)
chr3 (159-213)||(3996353-3996406)
chr3 (159-213)||(4009879-4009932)
chr3 (160-213)||(46006152-46006205)
[»] chr7 (24 HSPs)
chr7 (160-245)||(31330390-31330475)
chr7 (160-239)||(36901086-36901165)
chr7 (159-235)||(13057864-13057941)
chr7 (158-277)||(25307494-25307613)
chr7 (160-231)||(36482063-36482134)
chr7 (158-231)||(47841479-47841552)
chr7 (159-235)||(6068092-6068168)
chr7 (160-215)||(43302191-43302246)
chr7 (152-274)||(44441578-44441701)
chr7 (159-234)||(48767211-48767286)
chr7 (159-213)||(2008584-2008638)
chr7 (158-232)||(4958232-4958306)
chr7 (159-228)||(15018374-15018443)
chr7 (163-214)||(29914477-29914528)
chr7 (158-205)||(32724225-32724272)
chr7 (164-239)||(39853769-39853844)
chr7 (160-215)||(44441360-44441415)
chr7 (159-213)||(4874941-4874995)
chr7 (149-215)||(25324574-25324640)
chr7 (159-205)||(27334367-27334413)
chr7 (158-212)||(36656684-36656738)
chr7 (160-213)||(23156315-23156368)
chr7 (159-220)||(36039050-36039111)
chr7 (160-253)||(38360818-38360911)
[»] chr5 (18 HSPs)
chr5 (149-277)||(837758-837884)
chr5 (160-215)||(26675552-26675607)
chr5 (160-215)||(26947160-26947215)
chr5 (158-263)||(1666797-1666902)
chr5 (162-235)||(35463281-35463354)
chr5 (139-269)||(4432306-4432435)
chr5 (160-248)||(15468162-15468250)
chr5 (159-231)||(42951789-42951861)
chr5 (139-215)||(13420781-13420854)
chr5 (159-235)||(6761421-6761497)
chr5 (160-235)||(12593121-12593197)
chr5 (149-221)||(20420154-20420226)
chr5 (160-215)||(1309835-1309890)
chr5 (160-215)||(7293042-7293097)
chr5 (160-215)||(13486580-13486635)
chr5 (179-261)||(29558352-29558434)
chr5 (159-205)||(34382555-34382601)
chr5 (82-135)||(4432232-4432284)
[»] chr1 (18 HSPs)
chr1 (149-215)||(36297967-36298034)
chr1 (160-239)||(42831641-42831720)
chr1 (160-235)||(44665369-44665444)
chr1 (159-248)||(52353828-52353917)
chr1 (160-231)||(13984034-13984105)
chr1 (159-263)||(51263185-51263287)
chr1 (159-231)||(23333755-23333827)
chr1 (160-215)||(32851832-32851887)
chr1 (160-215)||(43822772-43822827)
chr1 (158-235)||(9505536-9505613)
chr1 (86-154)||(43822678-43822747)
chr1 (162-231)||(47783710-47783779)
chr1 (159-215)||(11241552-11241608)
chr1 (169-241)||(35839043-35839115)
chr1 (160-215)||(33041440-33041495)
chr1 (86-137)||(36166776-36166827)
chr1 (159-232)||(31133148-31133221)
chr1 (86-162)||(42831546-42831623)
[»] chr6 (6 HSPs)
chr6 (160-234)||(6988172-6988246)
chr6 (161-263)||(25099074-25099176)
chr6 (159-235)||(18804229-18804305)
chr6 (159-215)||(7693996-7694052)
chr6 (160-231)||(32658482-32658553)
chr6 (159-205)||(9491838-9491884)
[»] scaffold0712 (1 HSPs)
scaffold0712 (156-216)||(6132-6192)
[»] scaffold0709 (1 HSPs)
scaffold0709 (156-216)||(6150-6210)


Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 398 - 698
Target Start/End: Complemental strand, 44583343 - 44583042
Alignment:
Q  398 tggtttacgg-aaaaaggttgaatatcctatagtgtcactatcctatcctatgttggttggcttggttgatgggtcataatagtaatttaatagaagaat 496  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44583343 tggtttacgggaaaaaggttgaatatcctatagtgtcactatcctatcctatgttggttggcttggttgatgggtcataatagtaatttaatagaagaat 44583244  T
Q  497 ccacgaatgagagaaattggggcaaaacccccttcaatcgaattcgaatggtggcgttgttgaatgctcttaaaccctaatccaaatgttcttcaccatt 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44583243 ccacgaatgagagaaattggggcaaaacccccttcaatcgaattcgaatggtggcgttgttgaatgctcttaaacccaaatccaaatgttcttcaccatt 44583144  T
Q  597 gtcgaagaatttgagcatgatcctctcactctttccctgatcatgctaattacctctctgcgatccactcgcactctcttgaaaattttcgcaccttctt 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44583143 gtcgaagaatttgagcatgatcctctcactctttccctgatcatgctaattacctctctgcgatccactcgcactctcttgaaaattttcgcaccttctt 44583044  T
Q  697 cc 698  Q
    ||    
T  44583043 cc 44583042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 13 - 309
Target Start/End: Complemental strand, 44583640 - 44583344
Alignment:
Q  13 aatattaatgaaaa-tccatctattaaacattattgaattaattnnnnnnnnnnnnttagggtgttacactaaccatttaagactcagtacctattaggt 111  Q
    |||||||||||||| |||||||||||||||| ||||||||||||            ||||||||||||||||| ||||||||| || |||||||||||||    
T  44583640 aatattaatgaaaactccatctattaaacatcattgaattaattaaaaatagaaaattagggtgttacactaaacatttaagagtcggtacctattaggt 44583541  T
Q  112 acctccgttgggatgaatctttttcagg-tcttacttaagaccctcactttttaatattaaaagattgaaatgtgatgatataaatttattgatatttga 210  Q
    || ||| ||||| |||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  44583540 ac-tccattggggtgaatctttttcggggtcttacttaagaccctcactttttaatattaaaaaattgaaatgtgatgatataaatttatggatatttga 44583442  T
Q  211 ttagtaaatttcatttaagaaatttttgtaaaatgctggattgaaaagattgaattcttgttagatagtttataaataagtgatgtatacatgtgagct 309  Q
    |||||||||||||||||||||||||| || ||||| | ||||| ||||||||||||||| ||| |||  ||||||||||||||| ||||||||||||||    
T  44583441 ttagtaaatttcatttaagaaattttcgtgaaatgttagattggaaagattgaattcttattaaata-cttataaataagtgatatatacatgtgagct 44583344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 36887708 - 36887618
Alignment:
Q  150 gaccctcact-ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgt 239  Q
    |||||||||| |||||||||||||| |||||||||  |||||||||||||||||||| |||||||||  || ||||||||||| |||||||    
T  36887708 gaccctcactcttttaatattaaaaaattgaaatgcaatgatataaatttattgatagttgattagtggatctcatttaagaattttttgt 36887618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 34234871 - 34234935
Alignment:
Q  151 accctcactttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||| |||||||||||||||||| |||||||||| |||||||||| ||||||||| |||||||||    
T  34234871 acccacactttttaatattaaaaaattgaaatgtaatgatataaagttattgataattgattagt 34234935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 13022853 - 13022786
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcattt 226  Q
    ||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||| | ||||||||    
T  13022853 tttttaatattaaaaaattgaaatgtaataatataaatttattgatagttgattagtgagtttcattt 13022786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 40999675 - 40999754
Alignment:
Q  161 tttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgta 240  Q
    |||||||||||||||||||||| | |||||||||| ||||||||  |||||||||   || |||||||||||||| ||||    
T  40999675 tttaatattaaaagattgaaatataatgatataaagttattgatggttgattagtgggttccatttaagaaatttgtgta 40999754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 44887368 - 44887293
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaattt 235  Q
    |||||||||||||| |||||||| | |||||||||||||||||||| ||||||| |  || |||||||| ||||||    
T  44887368 ttttaatattaaaaaattgaaatataatgatataaatttattgatagttgattattggatctcatttaaaaaattt 44887293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 6459074 - 6459150
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaattt 235  Q
    ||||||||||||||| ||| |||| | |||||| ||| ||||||||| ||||||||||| | ||||||| |||||||    
T  6459074 tttttaatattaaaaaattaaaatataatgatagaaaattattgatagttgattagtaagtctcatttacgaaattt 6459150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 26297112 - 26297164
Alignment:
Q  161 tttaatattaaaagattgaaatgtgatgatataaatttattgatatttgatta 213  Q
    ||||||||||||| ||||||||||| ||||||||| ||||||||| |||||||    
T  26297112 tttaatattaaaaaattgaaatgtggtgatataaagttattgatagttgatta 26297164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 28857070 - 28857183
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatt---tgattagtaaatttcatttaagaaatttttgtaaaatgctggattgaa 255  Q
    ||||||||||||||| ||||| ||||| | ||||||| ||||| ||| |   |||||||||| | | ||||||||||||| ||||| ||||||| ||| |    
T  28857070 tttttaatattaaaaaattgatatgtggtaatataaagttattaatactagttgattagtaagtcttatttaagaaatttgtgtaagatgctgggttgga 28857169  T
Q  256 aagattgaattctt 269  Q
    | |||| |||||||    
T  28857170 aggattaaattctt 28857183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 65525 - 65468
Alignment:
Q  156 cactttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgatta 213  Q
    ||||||||||||| |||| |||||||||| |||||| ||| ||||||||| |||||||    
T  65525 cactttttaatataaaaaaattgaaatgtaatgatacaaacttattgatagttgatta 65468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 34821004 - 34820919
Alignment:
Q  163 taatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctg 248  Q
    ||||||||||| ||| |||||| |||||||||| ||| ||||| ||||||  ||| || | |||||||||||| ||| ||||||||    
T  34821004 taatattaaaaaattaaaatgtaatgatataaagttactgatagttgattgataagttccgtttaagaaatttgtgtgaaatgctg 34820919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 32887730 - 32887618
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctggattgaaaaga 259  Q
    |||||||||||||| ||| |||||| || ||||||| ||||| ||| |||||||||  |||| |||||| |||||| ||| | || |||||||| | |||    
T  32887730 ttttaatattaaaaaattaaaatgtaataatataaagttatttatagttgattagtggattt-atttaaaaaatttatgtgatat-ctggattggagaga 32887633  T
Q  260 ttgaattcttgttag 274  Q
    |||||| ||| ||||    
T  32887632 ttgaatgcttattag 32887618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 18970010 - 18970067
Alignment:
Q  178 gaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaattt 235  Q
    ||||||| || ||||||| ||||| ||| ||||||||| | |||||||||||||||||    
T  18970010 gaaatgtaattatataaagttattaatagttgattagtgagtttcatttaagaaattt 18970067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 34374930 - 34374986
Alignment:
Q  82 taaccatttaagactcagtacctattaggtacctccgttgggatgaatctttttcagg 139  Q
    ||||||||||||| || |||||||||||||||| ||  ||||| ||||||||||||||    
T  34374930 taaccatttaagattcggtacctattaggtacc-cccatgggaagaatctttttcagg 34374986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 138 - 269
Target Start/End: Original strand, 12447391 - 12447523
Alignment:
Q  138 ggtcttacttaagaccctcacttttt-aatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttt 236  Q
    |||||||||||||||||||||| ||| ||| |||||| |||||||||| |||||||||| ||||||||| |||||||||   | | ||||||||||||||    
T  12447391 ggtcttacttaagaccctcactatttcaattttaaaaaattgaaatgtaatgatataaagttattgatagttgattagtgggtcttatttaagaaatttt 12447490  T
Q  237 tgtaaaatgctggattgaaaagattgaattctt 269  Q
    ||| | ||||||| || ||| |||||| |||||    
T  12447491 tgtgagatgctgggttaaaaggattgagttctt 12447523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 30865886 - 30865972
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatg 245  Q
    ||||||||||||||| |||||||||| |||||||||| ||||||||| ||||||||| | | ||||||||||||||| ||| |||||    
T  30865886 tttttaatattaaaaaattgaaatgtaatgatataaagttattgatagttgattagtgagtctcatttaagaaatttatgtgaaatg 30865972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 39055154 - 39055229
Alignment:
Q  156 cactttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaa 231  Q
    |||||||||||||||||| ||| |||||| |||||||||| ||||||||| |||||||||   |||||||||||||    
T  39055154 cactttttaatattaaaaaattaaaatgtaatgatataaagttattgatagttgattagtgggtttcatttaagaa 39055229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 2396293 - 2396382
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctg 248  Q
    |||||||||||||||  |||||||||  ||||||||| ||||||||| |||||||||   || |||||||||||||||||| | ||||||    
T  2396293 tttttaatattaaaaacttgaaatgtactgatataaagttattgatagttgattagtgggttccatttaagaaatttttgtgagatgctg 2396382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 10180743 - 10180655
Alignment:
Q  158 ctttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgct 247  Q
    |||||||||||||||| ||||| |||| |||||||||| ||||||||| |||||| ||  || ||||||||||||||| ||||| |||||    
T  10180743 ctttttaatattaaaaaattgatatgtaatgatataaagttattgatagttgatt-gtggatctcatttaagaaatttgtgtaagatgct 10180655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 2574177 - 2574102
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaattt 235  Q
    |||||| ||||||| |||||||||| |||||||||| ||||| ||| ||||||||| ||||  |||||||||||||    
T  2574177 ttttaacattaaaaaattgaaatgtaatgatataaagttattaatagttgattagtgaattctatttaagaaattt 2574102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 35332111 - 35332056
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||||||||||||| |||||||| | |||||||||| ||||||||| |||||||||    
T  35332111 ttttaatattaaaaaattgaaatataatgatataaagttattgatagttgattagt 35332056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 49211023 - 49211102
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgt 239  Q
    |||||||||||||| ||| |||||| |||||||||| ||||||||| ||||||| |   | ||||||||| |||||||||    
T  49211023 ttttaatattaaaaaattaaaatgtaatgatataaagttattgataattgattaatgggtctcatttaaggaatttttgt 49211102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 23359098 - 23359169
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaa 231  Q
    |||||||||||||| |||||||| | || ||||||| ||||||||| |||||| ||  || |||||||||||    
T  23359098 ttttaatattaaaaaattgaaatattataatataaagttattgatagttgatttgtggatctcatttaagaa 23359169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 277
Target Start/End: Original strand, 26699028 - 26699119
Alignment:
Q  186 atgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctggattgaaaagattgaattcttgttagata 277  Q
    |||||||||| ||||| ||  |||||||||   | ||||||||||||||| ||| |||||||  ||||||| |||||| ||||| |||||||    
T  26699028 atgatataaagttattaatcgttgattagtgtgtctcatttaagaaatttgtgtgaaatgctatattgaaatgattgagttcttattagata 26699119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 39629321 - 39629250
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaa 231  Q
    |||||||||||||| |||||||  | |||||||||| ||||||||| ||| |||||  || |||||||||||    
T  39629321 ttttaatattaaaaaattgaaaaataatgatataaaattattgatagttgtttagtggatctcatttaagaa 39629250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 44500489 - 44500544
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||||||||||||| |||||||||| ||| ||||||  |||||||| |||||||||    
T  44500489 ttttaatattaaaaaattgaaatgtaatgttataaaactattgatagttgattagt 44500544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 822507 - 822454
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgatta 213  Q
    |||||||||||||| ||||||||||  ||||||||  ||||||||| |||||||    
T  822507 ttttaatattaaaaaattgaaatgtagtgatataatgttattgatagttgatta 822454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 24030620 - 24030677
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagta 216  Q
    ||||||||||||||| ||| |||||| || || |||| ||||||||| ||||||||||    
T  24030620 tttttaatattaaaaaattaaaatgtaataatgtaaagttattgatagttgattagta 24030677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 23036790 - 23036907
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctggattgaaaaga 259  Q
    |||||||||||||| ||||| |||| |||||||||| ||||||||| ||||| |||  |||||  ||||||||||| ||| | ||||||| ||||| |||    
T  23036790 ttttaatattaaaaaattgatatgtaatgatataaaattattgatagttgatcagtggatttctattaagaaatttgtgtgagatgctgggttgaagaga 23036889  T
Q  260 ttgaattcttgttagata 277  Q
    |||| ||||| |||||||    
T  23036890 ttgagttcttattagata 23036907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 6519170 - 6519058
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctggattgaaaaga 259  Q
    ||||| |||||||| |||||||||| |||||||||| ||||||||| ||||||||| | | ||||||||||||  ||||| | ||||||| ||| | |||    
T  6519170 ttttagtattaaaaaattgaaatgtaatgatataaagttattgatagttgattagtgagtctcatttaagaaa--tttgtgagatgctgggttggagaga 6519073  T
Q  260 ttgaattcttgttag 274  Q
    |||||||||| ||||    
T  6519072 ttgaattcttattag 6519058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 3628224 - 3628300
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaattt 235  Q
    ||||||||||||||| ||||| |||| |||||||||| |||||| || ||||||| | |||||||||||||||||||    
T  3628224 tttttaatattaaaaaattgagatgtaatgatataaagttattgctagttgattaatgaatttcatttaagaaattt 3628300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 11777795 - 11777720
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaattt 235  Q
    ||||||||||||||  ||||||||| |||||||||| ||||||||| ||||||||||  | |||||||||||||||    
T  11777795 ttttaatattaaaaagttgaaatgtaatgatataaagttattgatagttgattagtaggtctcatttaagaaattt 11777720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 9133700 - 9133781
Alignment:
Q  82 taaccatttaagactcagtacctattaggtacctccgttgggatgaatctttttca-ggtcttacttaagaccctcactttt 162  Q
    |||| ||||||||| | |||||||||||||||||||  || || |||||||||||| ||| |||||||||||||||||||||    
T  9133700 taactatttaagacccggtacctattaggtacctccaatgagaagaatctttttcagggttttacttaagaccctcactttt 9133781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 9604630 - 9604513
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctggattgaaaaga 259  Q
    ||||||| |||||| |||||||| | |||||||||| ||||||||| |||||||||   || |||||||||||||||| | | ||||||| ||| |  ||    
T  9604630 ttttaatgttaaaaaattgaaatctaatgatataaagttattgatagttgattagtgggttccatttaagaaatttttatgagatgctgggttggatgga 9604531  T
Q  260 ttgaattcttgttagata 277  Q
    |||| ||||| |||||||    
T  9604530 ttgagttcttattagata 9604513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 28540667 - 28540756
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctgg 249  Q
    |||||||||||||| |||||||||| ||||||||||  |||||||| ||||||||| | | || |||||||||||| ||| | |||||||    
T  28540667 ttttaatattaaaaaattgaaatgtaatgatataaaactattgatagttgattagtgagtctcttttaagaaatttgtgtgagatgctgg 28540756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 2603200 - 2603129
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaa 231  Q
    |||||||||||||| ||||||||||  ||||||||| ||||||||| |||||||||  || |||||||||||    
T  2603200 ttttaatattaaaaaattgaaatgtagtgatataaagttattgatagttgattagtggatctcatttaagaa 2603129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 9134147 - 9134218
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaa 231  Q
    |||||||||||||| |||||||| | |||||||||| ||||||||| ||||||||| | | |||||||||||    
T  9134147 ttttaatattaaaaaattgaaatataatgatataaagttattgatagttgattagtgagtctcatttaagaa 9134218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 35973515 - 35973441
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaat 233  Q
    ||||||||||||||| ||||| || | |||||||||  ||||||||| |||||||||| || |||||||||||||    
T  35973515 tttttaatattaaaaaattgatatataatgatataatgttattgataattgattagtagatctcatttaagaaat 35973441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 18806706 - 18806641
Alignment:
Q  150 gaccctcactttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    ||||| ||| |||||||||||||| |||||||| | |||||||||| ||||||||| |||||||||    
T  18806706 gacccgcaccttttaatattaaaaaattgaaatataatgatataaagttattgatagttgattagt 18806641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 36316757 - 36316832
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaattt 235  Q
    ||||||||||||||| |||||||||| |||||||||| ||||||||| ||||| |  ||||| || |||||||||||    
T  36316757 tttttaatattaaaa-attgaaatgtaatgatataaaattattgatagttgatcatgaaattccacttaagaaattt 36316832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 10954200 - 10954145
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||||||||||||| |||||||||| |||||||||| | ||||||| |||||||||    
T  10954200 ttttaatattaaaaaattgaaatgtaatgatataaaataattgatagttgattagt 10954145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 10962205 - 10962150
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||||||||||||| |||||||||| |||||||||| | ||||||| |||||||||    
T  10962205 ttttaatattaaaaaattgaaatgtaatgatataaaataattgatagttgattagt 10962150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 5139803 - 5139733
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaaga 230  Q
    |||||||||||||| ||  |||| | |||||||||| ||||||||| ||||||||| | ||||||||||||    
T  5139803 ttttaatattaaaaaatgaaaatataatgatataaaattattgatagttgattagtgagtttcatttaaga 5139733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 23982239 - 23982296
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagta 216  Q
    ||||||||||||||| |||||||| | |||||||||| ||||||||| ||| ||||||    
T  23982239 tttttaatattaaaaaattgaaatataatgatataaagttattgatagttggttagta 23982296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 4797360 - 4797273
Alignment:
Q  162 ttaatattaaaagattgaaatgtgatgata-taaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctg 248  Q
    |||||||||||| ||| ||||||||||||| |||| ||||||||| ||||||| | | |  |||||||||||||| ||| | ||||||    
T  4797360 ttaatattaaaaaattaaaatgtgatgatattaaagttattgatagttgattaatgagtcacatttaagaaatttgtgtgagatgctg 4797273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 5569223 - 5569278
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattag 214  Q
    ||||||||||||||| ||| |||||| |||||||||  ||||||||| ||||||||    
T  5569223 tttttaatattaaaaaattcaaatgtaatgatataatgttattgatagttgattag 5569278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 6427229 - 6427174
Alignment:
Q  161 tttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagta 216  Q
    ||||||||||||| ||| |||| | |||||||||| ||||||||| ||||||||||    
T  6427229 tttaatattaaaaaattaaaatataatgatataaaattattgatagttgattagta 6427174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 16531697 - 16531626
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaa 231  Q
    |||||||||||||| |||||||| | |||||||||| ||||  ||| |||||||||| || || ||||||||    
T  16531697 ttttaatattaaaaaattgaaatataatgatataaagttatgaatagttgattagtagatctcttttaagaa 16531626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 31226597 - 31226542
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||||||||||||| |||||||| | |||||||||| ||||||||| |||| ||||    
T  31226597 ttttaatattaaaaaattgaaatataatgatataaaattattgatagttgagtagt 31226542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 37674001 - 37673950
Alignment:
Q  86 catttaagactcagtacctattaggtacctccgttgggatgaatctttttca 137  Q
    |||||||||||| |||||||||||||| |||| ||||| ||||| |||||||    
T  37674001 catttaagactcggtacctattaggtatctccattggggtgaatttttttca 37673950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 38937786 - 38937840
Alignment:
Q  158 ctttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgatt 212  Q
    |||||||||||||||| ||| | ||||||||||||||| || |||||| ||||||    
T  38937786 ctttttaatattaaaaaattaatatgtgatgatataaagttgttgatagttgatt 38937840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 7288244 - 7288293
Alignment:
Q  186 atgatataaatttattgatatttgattagtaaatttcatttaagaaattt 235  Q
    |||||||||| |||| |||| ||||||||||| | |||||||||||||||    
T  7288244 atgatataaagttatcgatagttgattagtaagtctcatttaagaaattt 7288293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 13629166 - 13629113
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgatt 212  Q
    ||||||||||||||| ||||| |||| ||| |||||| ||||||||| ||||||    
T  13629166 tttttaatattaaaaaattgatatgtaatggtataaagttattgatagttgatt 13629113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 13729578 - 13729525
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgatt 212  Q
    ||||||||||||||| ||||| |||| ||| |||||| ||||||||| ||||||    
T  13729578 tttttaatattaaaaaattgatatgtaatggtataaagttattgatagttgatt 13729525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 28567803 - 28567848
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgata 205  Q
    |||||||||||||| |||||||| | |||||||||| |||||||||    
T  28567803 ttttaatattaaaaaattgaaatataatgatataaagttattgata 28567848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 28575396 - 28575441
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgata 205  Q
    |||||||||||||| |||||||| | |||||||||| |||||||||    
T  28575396 ttttaatattaaaaaattgaaatataatgatataaagttattgata 28575441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 36902451 - 36902376
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaattt 235  Q
    |||||||||||||| ||| |||| | |||||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  36902451 ttttaatattaaaaaattaaaatataatgatataaagttattgatagttgattagtgaatttcatttaagaaattt 36902376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 41211978 - 41212051
Alignment:
Q  158 ctttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaa 232  Q
    |||||||||||||||| ||| |||||| |||||||||| ||||||||| ||||||||||  | ||||||||||||    
T  41211978 ctttttaatattaaaa-attaaaatgtaatgatataaagttattgatagttgattagtatgtctcatttaagaaa 41212051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 30595209 - 30595092
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctggattgaaaaga 259  Q
    ||||| |||||||| ||| |||||| |||||||||| ||||||||| ||||||||| | | ||||||||    ||||||| ||||| ||  ||| | |||    
T  30595209 ttttagtattaaaaaatttaaatgtaatgatataaaattattgatagttgattagtgagtctcatttaaattttttttgtgaaatgttgagttggagaga 30595110  T
Q  260 ttgaattcttgttagata 277  Q
    |||||||||| |||||||    
T  30595109 ttgaattcttattagata 30595092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 3993567 - 3993620
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgatta 213  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||  |||||||    
T  3993567 tttttaatattaaaa-attgaaatgtaatgatataaatttattgatggttgatta 3993620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 33832069 - 33831980
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctg 248  Q
    ||||||||||||||| ||| || ||| ||||||| || ||||||||| |||||||||  ||| |||| ||||||||| ||| | ||||||    
T  33832069 tttttaatattaaaaaattaaattgtaatgatatgaaattattgatagttgattagtggattccattaaagaaatttgtgtgagatgctg 33831980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 19900260 - 19900204
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    ||||||||||||||| ||| |||||| |||||||||| ||||| ||| |||||||||    
T  19900260 tttttaatattaaaaaattaaaatgtaatgatataaaattatttatagttgattagt 19900204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 47075676 - 47075620
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    ||||||||||||||| ||||| |||| |||||||||| |||| |||| |||||||||    
T  47075676 tttttaatattaaaaaattgatatgtaatgatataaaattatagatagttgattagt 47075620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 54422720 - 54422795
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaattt 235  Q
    |||||| |||||||| |||||| ||| |||||||||| ||||||||| |||||||||   | |||||||||||||||    
T  54422720 tttttagtattaaaaaattgaa-tgtaatgatataaaattattgataattgattagtgggtctcatttaagaaattt 54422795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 55272804 - 55272855
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgat 211  Q
    |||||||||||||| |||||||| | |||||||||| ||||||||| |||||    
T  55272804 ttttaatattaaaaaattgaaatataatgatataaagttattgatagttgat 55272855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 3973524 - 3973471
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgatta 213  Q
    ||||||||||||||| ||| |||||| |||||||||||||||||||  |||||||    
T  3973524 tttttaatattaaaa-attaaaatgtaatgatataaatttattgatggttgatta 3973471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 3996353 - 3996406
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgatta 213  Q
    ||||||||||||||| ||| |||||| |||||||||||||||||||  |||||||    
T  3996353 tttttaatattaaaa-attaaaatgtaatgatataaatttattgatggttgatta 3996406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 4009879 - 4009932
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgatta 213  Q
    ||||||||||||||| ||| |||||| |||||||||||||||||||  |||||||    
T  4009879 tttttaatattaaaa-atttaaatgtaatgatataaatttattgatggttgatta 4009932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 46006205 - 46006152
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgatta 213  Q
    |||||||||||||| ||| |||| | |||||||||| ||||||||| |||||||    
T  46006205 ttttaatattaaaaaattaaaatataatgatataaagttattgatagttgatta 46006152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 31330390 - 31330475
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatg 245  Q
    |||||||||||||| |||||||||| |||||||| | ||||||||| ||||||||||  | ||||||||||||||| ||| |||||    
T  31330390 ttttaatattaaaaaattgaaatgtaatgatatatacttattgatagttgattagtacgtctcatttaagaaatttgtgtgaaatg 31330475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 36901165 - 36901086
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgt 239  Q
    |||||||||||||| ||| |||| | |||||||||| ||||||||| ||||||||||  | |||||||||||||||||||    
T  36901165 ttttaatattaaaaaattaaaatataatgatataaaattattgatagttgattagtaggtctcatttaagaaatttttgt 36901086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 13057864 - 13057941
Alignment:
Q  159 tttttaatattaaaagatt-gaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaattt 235  Q
    ||||||||||||||| ||| ||||||| |||||||||| ||||||||| ||||||||||| |  ||||||||||||||    
T  13057864 tttttaatattaaaaaatttgaaatgttatgatataaagttattgatagttgattagtaagtcacatttaagaaattt 13057941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 277
Target Start/End: Complemental strand, 25307613 - 25307494
Alignment:
Q  158 ctttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctggattgaaaa 257  Q
    |||||||||||||||| ||||| |||| ||||||||| |||||||||  |||||| ||  || ||||||||||||||| |||  ||||  || ||  | |    
T  25307613 ctttttaatattaaaaaattgagatgtaatgatataagtttattgattgttgatttgtggatctcatttaagaaatttgtgtcgaatgtaggtttagaga 25307514  T
Q  258 gattgaattcttgttagata 277  Q
    |||||||| |||||||||||    
T  25307513 gattgaatgcttgttagata 25307494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 36482134 - 36482063
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaa 231  Q
    |||||||||||||| |||||||| | || ||||||| ||||||||| ||||||||| ||| |||||||||||    
T  36482134 ttttaatattaaaaaattgaaatataattatataaagttattgatagttgattagtgaatctcatttaagaa 36482063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 47841552 - 47841479
Alignment:
Q  158 ctttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaa 231  Q
    |||||||||||||||| ||||| |||||||| |||||| ||||||||| |||||| || | | |||||||||||    
T  47841552 ctttttaatattaaaaaattgatatgtgatggtataaagttattgatagttgatttgtgagtctcatttaagaa 47841479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 6068092 - 6068168
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaattt 235  Q
    ||||||||||||||| |||||||||| |||||| ||| |||||| || |||||||||  |||| |||||| ||||||    
T  6068092 tttttaatattaaaaaattgaaatgtaatgatagaaaattattggtagttgattagtggattttatttaaaaaattt 6068168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 43302246 - 43302191
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||||||||||||| |||||||| | |||||||||| ||||||||| |||||||||    
T  43302246 ttttaatattaaaaaattgaaatataatgatataaagttattgatagttgattagt 43302191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 152 - 274
Target Start/End: Original strand, 44441578 - 44441701
Alignment:
Q  152 ccctcact-ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctgga 250  Q
    |||||||| |||||||||||||| |||||| ||| |||||||  | || |||||| |||||||||   | ||||||||||||||||||| | |||||||     
T  44441578 ccctcactcttttaatattaaaaaattgaagtgtaatgatatccagttgttgatagttgattagtgggtctcatttaagaaatttttgtgagatgctggg 44441677  T
Q  251 ttgaaaagattgaattcttgttag 274  Q
    ||| | | ||||| ||||| ||||    
T  44441678 ttggagatattgagttcttattag 44441701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 48767286 - 48767211
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatt 234  Q
    ||||||||| ||||| |||||||||  |||||||||| ||||||||| |||||||||   | ||||||||||||||    
T  48767286 tttttaataataaaaaattgaaatgcaatgatataaagttattgatagttgattagtgggtctcatttaagaaatt 48767211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 2008584 - 2008638
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgatta 213  Q
    ||||||||||||||| |||||||||| ||| |||||| ||||||||| |||||||    
T  2008584 tttttaatattaaaaaattgaaatgtaatggtataaaattattgatagttgatta 2008638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 4958232 - 4958306
Alignment:
Q  158 ctttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaa 232  Q
    |||||||||||||||| ||||| |||| |||||||||| || |||||| |||||| ||   ||||||||||||||    
T  4958232 ctttttaatattaaaaaattgatatgtaatgatataaagttgttgatagttgatttgtgggtttcatttaagaaa 4958306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 15018374 - 15018443
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaa 228  Q
    ||||||||||| ||| ||| |||||| || ||||||| ||||||||| |||||||||| || ||||||||    
T  15018374 tttttaatattcaaaaattaaaatgtaataatataaagttattgataattgattagtagatctcatttaa 15018443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 29914528 - 29914477
Alignment:
Q  163 taatattaaaagattgaaatgtgatgatataaatttattgatatttgattag 214  Q
    ||||||||||| |||||||||| || ||||||| ||||||||| ||||||||    
T  29914528 taatattaaaaaattgaaatgtaataatataaagttattgatagttgattag 29914477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 32724225 - 32724272
Alignment:
Q  158 ctttttaatattaaaagattgaaatgtgatgatataaatttattgata 205  Q
    |||||||||||||||| ||||| |||| |||||||||| |||||||||    
T  32724225 ctttttaatattaaaaaattgatatgtaatgatataaagttattgata 32724272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 39853769 - 39853844
Alignment:
Q  164 aatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgt 239  Q
    |||||||||| |||||||| | ||| |||||| ||||||||| |||||||||   |  ||||||||||||||||||    
T  39853769 aatattaaaaaattgaaatataatggtataaagttattgatagttgattagtgggtcccatttaagaaatttttgt 39853844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 44441415 - 44441360
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||||||||||||| ||| ||||||  ||||||||| ||||||||| |||||||||    
T  44441415 ttttaatattaaaaaattaaaatgtagtgatataaagttattgatagttgattagt 44441360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 4874995 - 4874941
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgatta 213  Q
    ||||||||||| ||| ||| |||||| |||||||||| ||||||||| |||||||    
T  4874995 tttttaatatttaaaaattaaaatgtaatgatataaagttattgatagttgatta 4874941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 25324640 - 25324574
Alignment:
Q  149 agaccctcactttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||||| |||||||||||||||||| ||||  || | |||||||||| |||||||||  ||||||||    
T  25324640 agacccacactttttaatattaaaaaattgttatataatgatataaaattattgatagctgattagt 25324574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 27334367 - 27334413
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgata 205  Q
    ||||||||||||||| |||||||||| |||||||| | |||||||||    
T  27334367 tttttaatattaaaatattgaaatgtaatgatatagagttattgata 27334413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 36656738 - 36656684
Alignment:
Q  158 ctttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgatt 212  Q
    |||||||||||||||| ||||| |||| |||||||||| ||||| ||| ||||||    
T  36656738 ctttttaatattaaaaaattgatatgtaatgatataaagttattaatagttgatt 36656684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 23156368 - 23156315
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgatta 213  Q
    |||||||||||||| ||| ||||||  ||||||||| ||||||||| |||||||    
T  23156368 ttttaatattaaaaaattaaaatgtagtgatataaagttattgatagttgatta 23156315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 36039050 - 36039111
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatt 220  Q
    ||||||||||||||| | |||||| | |||||||||| |||| |||| ||||||||| ||||    
T  36039050 tttttaatattaaaaaaatgaaatataatgatataaagttatcgatagttgattagttaatt 36039111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 38360911 - 38360818
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctggattg 253  Q
    |||| ||||||||| |||||||||||||  |||| | ||||||||| ||| | ||| |||| ||||||| |||||| ||| | ||| |||||||    
T  38360911 ttttgatattaaaaaattgaaatgtgatagtatatagttattgatagttggtaagtgaattccatttaaaaaatttgtgtgagatgttggattg 38360818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 149 - 277
Target Start/End: Complemental strand, 837884 - 837758
Alignment:
Q  149 agaccctcactttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctg 248  Q
    |||||| |||||||||||||||||| |||||||||| |||||||||| |||| |||| ||  |||||   ||||||||||||||||| ||| | || |||    
T  837884 agacccacactttttaatattaaaatattgaaatgtaatgatataaaattatagatagtt--ttagtttgtttcatttaagaaatttatgtgagatactg 837787  T
Q  249 gattgaaaagattgaattcttgttagata 277  Q
    | ||||| ||||||| | ||| |||||||    
T  837786 ggttgaagagattgagtgcttattagata 837758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 26675607 - 26675552
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||||||||||||| |||||| |||||||||||||| |||||||||||||||||||    
T  26675607 ttttaatattaaaaaattgaagtgtgatgatataaagttattgatatttgattagt 26675552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 26947215 - 26947160
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||||||||||||| |||||| |||||||||||||| |||||||||||||||||||    
T  26947215 ttttaatattaaaaaattgaagtgtgatgatataaagttattgatatttgattagt 26947160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 158 - 263
Target Start/End: Complemental strand, 1666902 - 1666797
Alignment:
Q  158 ctttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctggattgaaaa 257  Q
    |||||| | ||||||| ||||| || | | |||||||| ||||||||| ||||||| || ||| |||||||||||||  ||||||||||||| ||| | |    
T  1666902 cttttttagattaaaaaattgagatataacgatataaagttattgatagttgattattagattccatttaagaaattcgtgtaaaatgctgggttggaga 1666803  T
Q  258 gattga 263  Q
    ||||||    
T  1666802 gattga 1666797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 35463354 - 35463281
Alignment:
Q  162 ttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaattt 235  Q
    |||||||||||| |||||||  | |||||||||| ||||||||| ||||||  | |||||||||||||||||||    
T  35463354 ttaatattaaaaaattgaaacataatgatataaaattattgatagttgatttatgaatttcatttaagaaattt 35463281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 4432306 - 4432435
Alignment:
Q  139 gtcttacttaagaccctcact-ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaattttt 237  Q
    |||||| ||| || ||||||| ||||||||||||||  ||||||||| || ||||||| |||||||||  |||| | | ||| |||||||||||||||||    
T  4432306 gtcttatttacgatcctcactcttttaatattaaaa--ttgaaatgtaattatataaagttattgatagctgatcaatgaatctcatttaagaaattttt 4432403  T
Q  238 gtaaaatgctggattgaaaagattgaattctt 269  Q
    || | ||||||  || ||  ||||||||||||    
T  4432404 gtgagatgctgcgtttaagggattgaattctt 4432435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 15468250 - 15468162
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctg 248  Q
    |||||||||||||| |||||||| | |||||||||| |||||||||  ||||||||  ||  |||||||||||||| ||| | ||||||    
T  15468250 ttttaatattaaaaaattgaaatttaatgatataaaattattgataaatgattagtggatcccatttaagaaatttgtgtgagatgctg 15468162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 42951861 - 42951789
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaa 231  Q
    ||||||||||||||| ||||||||||  ||||||||| ||||||||| |||||||||   | |||||||||||    
T  42951861 tttttaatattaaaaaattgaaatgtagtgatataaaattattgataattgattagtgggtctcatttaagaa 42951789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 13420854 - 13420781
Alignment:
Q  139 gtcttacttaagaccctcactttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||||||||||||||| |   |||||||||||||| |||||||| | || ||||||| ||||||||| |||||||||    
T  13420854 gtcttacttaagacccac---ttttaatattaaaaaattgaaatataattatataaagttattgatagttgattagt 13420781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 6761497 - 6761421
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaattt 235  Q
    ||||||||||||||| ||| |||||| |||||||||| || |||| | ||||||||| ||||| ||| || ||||||    
T  6761497 tttttaatattaaaaaattaaaatgtaatgatataaagttgttgacagttgattagtgaattttattgaaaaaattt 6761421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 12593121 - 12593197
Alignment:
Q  160 ttttaatattaaaaga-ttgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaattt 235  Q
    |||||||||||||| | || |||||| |||||||||| ||||||||| |||||||||   | |||||||||||||||    
T  12593121 ttttaatattaaaaaagttaaaatgtaatgatataaagttattgataattgattagttggtctcatttaagaaattt 12593197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 20420154 - 20420226
Alignment:
Q  149 agaccctcactttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaattt 221  Q
    |||||| || ||| ||||| ||||| ||||| || | |||||||||| ||||||||| |||||||||||||||    
T  20420154 agacccacaatttctaataataaaaaattgatatataatgatataaagttattgatagttgattagtaaattt 20420226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 1309890 - 1309835
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||||||||||||| ||| |||| | |||||||||| ||||||||| |||||||||    
T  1309890 ttttaatattaaaaaattaaaatataatgatataaaattattgataattgattagt 1309835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 7293042 - 7293097
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||||||||||||| |||||||||| |||||||||  ||||||||| || ||||||    
T  7293042 ttttaatattaaaaaattgaaatgtaatgatataatgttattgatagttaattagt 7293097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 13486580 - 13486635
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||||||||||||| |||||||| | |||||||||| |||||||||  ||||||||    
T  13486580 ttttaatattaaaaaattgaaatataatgatataaagttattgatagctgattagt 13486635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 29558352 - 29558434
Alignment:
Q  179 aaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctggattgaaaagatt 261  Q
    |||||| |||||||||| ||||||||| ||||||| || || | ||||||||||||| ||| | ||||||  ||||| |||||    
T  29558352 aaatgtaatgatataaaattattgatagttgattattagatcttatttaagaaatttgtgtgagatgctgagttgaagagatt 29558434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 34382601 - 34382555
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgata 205  Q
    ||||||||||||||| ||| |||||| |||||||||| |||||||||    
T  34382601 tttttaatattaaaatattaaaatgtaatgatataaaattattgata 34382555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 4432232 - 4432284
Alignment:
Q  82 taaccatttaagactcagtacctattaggtacctccgttgggatgaatcttttt 135  Q
    |||||||||||||||| |||||||||||||||| |||||||   ||||||||||    
T  4432232 taaccatttaagactcggtacctattaggtacc-ccgttggagagaatcttttt 4432284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 36297967 - 36298034
Alignment:
Q  149 agaccctcact-ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    ||||||||||| |||||||||||||| |||||||||| |||||||||| ||||||||| |||||||||    
T  36297967 agaccctcactattttaatattaaaaaattgaaatgtaatgatataaaattattgatagttgattagt 36298034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 42831641 - 42831720
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgt 239  Q
    |||||||||||||| ||| |||||| |||||||||| ||||||||| ||||||| |  || |||||||||||||||||||    
T  42831641 ttttaatattaaaaaattaaaatgtaatgatataaaattattgatagttgattaatggatctcatttaagaaatttttgt 42831720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 44665444 - 44665369
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaattt 235  Q
    |||||||||||||| |||||||| | |||||||||| ||||||||| |||||||||  ||||||||||||| ||||    
T  44665444 ttttaatattaaaaaattgaaatataatgatataaaattattgatagttgattagtgtatttcatttaagagattt 44665369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 52353917 - 52353828
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctg 248  Q
    ||||||||||||||| |||||||||| |||||||||| ||||||||| |||||||||   ||  ||||||||||||| ||| | ||||||    
T  52353917 tttttaatattaaaaaattgaaatgtaatgatataaagttattgatagttgattagtgggttctatttaagaaatttgtgtgagatgctg 52353828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 13984034 - 13984105
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaa 231  Q
    |||||||||||||| ||||||||||  ||||||||| ||||||||| ||||||||||  | |||||||||||    
T  13984034 ttttaatattaaaaaattgaaatgtagtgatataaagttattgatagttgattagtaggtctcatttaagaa 13984105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 159 - 263
Target Start/End: Original strand, 51263185 - 51263287
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctggattgaaaag 258  Q
    ||||||||||||||| ||| |||| | |||| ||||| ||||||||| |||||||||   ||||||||||||||  ||||| | |||||| ||||||| |    
T  51263185 tttttaatattaaaaaattaaaatataatgacataaagttattgatagttgattagtgtgtttcatttaagaaa--tttgtgagatgctgaattgaaatg 51263282  T
Q  259 attga 263  Q
    |||||    
T  51263283 attga 51263287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 23333755 - 23333827
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaa 231  Q
    ||||||||||||||| |||||||| | || ||||||| ||||||||||||||| ||| | | |||||||||||    
T  23333755 tttttaatattaaaaaattgaaatataataatataaagttattgatatttgatcagtgagtctcatttaagaa 23333827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 32851887 - 32851832
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||||||||||||| ||||||||||  ||||||||| ||||||||| |||||||||    
T  32851887 ttttaatattaaaaaattgaaatgtagtgatataaaattattgatagttgattagt 32851832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 43822772 - 43822827
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||||||||||||| ||||||||||  ||||||||| ||||||||| |||||||||    
T  43822772 ttttaatattaaaaaattgaaatgtagtgatataaagttattgatagttgattagt 43822827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 9505613 - 9505536
Alignment:
Q  158 ctttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaattt 235  Q
    |||||||||||||||| ||| | |||| || ||||||| ||||||||| ||||||||||  | || ||||||||||||    
T  9505613 ctttttaatattaaaaaatttatatgtaataatataaagttattgatagttgattagtaggtctcgtttaagaaattt 9505536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 43822678 - 43822747
Alignment:
Q  86 catttaagactcagtacctattaggtacctccgttgggatgaatctttttca-ggtcttacttaagaccc 154  Q
    |||||||||| | |||||||||||||||| || |||||  |||||||||||| ||||||| |||||||||    
T  43822678 catttaagacccggtacctattaggtacccccattggggagaatctttttcagggtcttatttaagaccc 43822747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 47783779 - 47783710
Alignment:
Q  162 ttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaa 231  Q
    |||||||||||| |||||||| | |||||||||| ||||||||| ||||||| ||  || ||||||||||    
T  47783779 ttaatattaaaaaattgaaatataatgatataaaattattgatagttgattaataggttccatttaagaa 47783710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 11241608 - 11241552
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||||||||||| || |||||||| | |||||||||| ||||||||| |||||||||    
T  11241608 tttttaatattataaaattgaaatataatgatataaagttattgatagttgattagt 11241552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 35839043 - 35839115
Alignment:
Q  169 taaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaa 241  Q
    ||||| ||||| || |||| ||||||| ||||||||| || |||| ||||||| ||||||||||||| |||||    
T  35839043 taaaaaattgatatatgataatataaagttattgatagttaattaataaattttatttaagaaatttgtgtaa 35839115  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 33041440 - 33041495
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    |||||||||||||| ||||| |||| |||||||||| ||||||||| || ||||||    
T  33041440 ttttaatattaaaatattgatatgtaatgatataaaattattgatagttaattagt 33041495  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 36166776 - 36166827
Alignment:
Q  86 catttaagactcagtacctattaggtacctccgttgggatgaatctttttca 137  Q
    |||||||||||| ||||||||||||||||||| ||||| | ||| |||||||    
T  36166776 catttaagactcggtacctattaggtacctccattggggtcaatttttttca 36166827  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 31133221 - 31133148
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaa 232  Q
    ||||||||||||||  ||| |||||| ||||||| || ||||||||| ||||||||| | ||  ||||||||||    
T  31133221 tttttaatattaaataatttaaatgtaatgatatgaaattattgatagttgattagttagttctatttaagaaa 31133148  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 42831546 - 42831623
Alignment:
Q  86 catttaagactcagtacctattaggtacctccgttgggatgaatctttttcag-gtcttacttaagaccctcactttt 162  Q
    |||||||||||| |||||||||||||||   | |||||| |||||||||||||  ||||| ||||||| | |||||||    
T  42831546 catttaagactcggtacctattaggtactctcattgggaagaatctttttcagactcttatttaagacacccactttt 42831623  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 6988172 - 6988246
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatt 234  Q
    |||||||||||||| ||| ||||||||||||||||| ||||||||| ||| ||||||  |||||||||| |||||    
T  6988172 ttttaatattaaaaaattaaaatgtgatgatataaaattattgatagttgtttagtaggtttcatttaaaaaatt 6988246  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 161 - 263
Target Start/End: Original strand, 25099074 - 25099176
Alignment:
Q  161 tttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaatttttgtaaaatgctggattgaaaagat 260  Q
    ||||||||||||| ||| |||| | |||||||||| ||||||||| ||||||||||| | |||||||| ||| || | |||||| || ||||||| ||||    
T  25099074 tttaatattaaaaaattaaaatataatgatataaaattattgatagttgattagtaagtatcatttaaaaaaattgtataaaatactcgattgaagagat 25099173  T
Q  261 tga 263  Q
    |||    
T  25099174 tga 25099176  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 18804305 - 18804229
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaaattt 235  Q
    ||||||||||||| | |||||||||| || ||||||| ||||||||| ||||||||||| || |||||| |||||||    
T  18804305 tttttaatattaataaattgaaatgtaataatataaaattattgatagttgattagtaagttccatttatgaaattt 18804229  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 7694052 - 7693996
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagt 215  Q
    ||||||||||||||| ||||||||||  |||||| || ||||||||| |||||||||    
T  7694052 tttttaatattaaaaaattgaaatgtattgatatgaagttattgatagttgattagt 7693996  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 32658553 - 32658482
Alignment:
Q  160 ttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagtaaatttcatttaagaa 231  Q
    |||||||||||||| ||| |||| |  ||||||||| ||||||||| |||||||||  ||| ||||||||||    
T  32658553 ttttaatattaaaaaattaaaatatactgatataaagttattgatagttgattagtggattccatttaagaa 32658482  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 9491884 - 9491838
Alignment:
Q  159 tttttaatattaaaagattgaaatgtgatgatataaatttattgata 205  Q
    ||||||||||||||| ||| |||||| |||||||||| |||||||||    
T  9491884 tttttaatattaaaaaattaaaatgtaatgatataaagttattgata 9491838  T

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Target: scaffold0712 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 6192 - 6132
Alignment:
Q  156 cactttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagta 216  Q
    |||||||||||||||||| ||||| || | || ||||||| ||||||||| ||||||||||    
T  6192 cactttttaatattaaaaaattgatatataataatataaaattattgatagttgattagta 6132  T

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Target: scaffold0709 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 6210 - 6150
Alignment:
Q  156 cactttttaatattaaaagattgaaatgtgatgatataaatttattgatatttgattagta 216  Q
    |||||||||||||||||| ||||| || | || ||||||| ||||||||| ||||||||||    
T  6210 cactttttaatattaaaaaattgatatataataatataaaattattgatagttgattagta 6150  T

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