View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18485_high_7 (Length: 429)

Name: NF18485_high_7
Description: NF18485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18485_high_7
NF18485_high_7
[»] chr7 (10 HSPs)
chr7 (12-258)||(41706269-41706515)
chr7 (285-335)||(41706560-41706610)
chr7 (371-410)||(32089322-32089361)
chr7 (371-410)||(32093079-32093118)
chr7 (371-410)||(32096795-32096834)
chr7 (371-410)||(39128549-39128588)
chr7 (371-410)||(39478457-39478496)
chr7 (371-410)||(41706686-41706725)
chr7 (371-410)||(41812161-41812200)
chr7 (371-410)||(32087967-32088006)
[»] chr1 (4 HSPs)
chr1 (373-411)||(6760093-6760131)
chr1 (371-410)||(31142005-31142044)
chr1 (371-412)||(34470024-34470065)
chr1 (373-409)||(520521-520557)
[»] chr5 (2 HSPs)
chr5 (375-411)||(17013883-17013919)
chr5 (373-410)||(8058720-8058757)
[»] chr3 (7 HSPs)
chr3 (372-408)||(50823392-50823428)
chr3 (372-408)||(50852433-50852469)
chr3 (371-410)||(38044578-38044617)
chr3 (371-410)||(48837987-48838026)
chr3 (374-410)||(147942-147978)
chr3 (371-406)||(50903990-50904025)
chr3 (370-410)||(22968727-22968767)
[»] chr8 (2 HSPs)
chr8 (371-410)||(21634863-21634902)
chr8 (371-407)||(10583099-10583135)
[»] chr6 (2 HSPs)
chr6 (371-410)||(26217291-26217330)
chr6 (371-412)||(7618987-7619028)
[»] chr2 (1 HSPs)
chr2 (370-411)||(20940534-20940575)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 41706269 - 41706515
Alignment:
Q  12 aagaatatgatttgacactatttaaaggttggaagnnnnnnnnctccacatacacaaacatctagttagtcaagattttgaatggcataaactttgtaac 111  Q
    |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41706269 aagaatatgatttgacactatttaaaggttggaagaaaaaaaactccacatacacaaacatctagttagtcaagattttgaatggcataaactttgtaac 41706368  T
Q  112 ataagacaaaggaaaacctggtcctagaatagaattagaatctgttttcaactcacttttccatgcttagaatctaatcctttaaggattgttttccact 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41706369 ataagacaaaggaaaacctggtcctagaatagaattagaatctgttttcaactcacttttccatgcttagaatctaatcctttaaggattgttttccact 41706468  T
Q  212 tctagctcagattgaccgacctgcatcaaatccatggtgctgcaata 258  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||    
T  41706469 tctagctcagattgacttacctgcatcaaatccatggtgctgcaata 41706515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 41706560 - 41706610
Alignment:
Q  285 gaaataatctgatacattcagaattcatagtagctaatcagttattgaaat 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41706560 gaaataatctgatacattcagaattcatagtagctaatcagttattgaaat 41706610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 410
Target Start/End: Original strand, 32089322 - 32089361
Alignment:
Q  371 tctgtatcgttccaattttatcggatgtccctgaagggac 410  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  32089322 tctgtatcgttccaattttatcggatgtccccgaagggac 32089361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 410
Target Start/End: Original strand, 32093079 - 32093118
Alignment:
Q  371 tctgtatcgttccaattttatcggatgtccctgaagggac 410  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  32093079 tctgtatcgttccaattttatcggatgtccccgaagggac 32093118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 410
Target Start/End: Original strand, 32096795 - 32096834
Alignment:
Q  371 tctgtatcgttccaattttatcggatgtccctgaagggac 410  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  32096795 tctgtatcgttccaattttatcggatgtccccgaagggac 32096834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 410
Target Start/End: Original strand, 39128549 - 39128588
Alignment:
Q  371 tctgtatcgttccaattttatcggatgtccctgaagggac 410  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  39128549 tctgtatcgttccaattttatcggatgtccccgaagggac 39128588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 410
Target Start/End: Complemental strand, 39478496 - 39478457
Alignment:
Q  371 tctgtatcgttccaattttatcggatgtccctgaagggac 410  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  39478496 tctgtatcgttccaattttatcggatgtccccgaagggac 39478457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 410
Target Start/End: Original strand, 41706686 - 41706725
Alignment:
Q  371 tctgtatcgttccaattttatcggatgtccctgaagggac 410  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  41706686 tctgtatcgttccaattttatcggatgtccccgaagggac 41706725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 410
Target Start/End: Complemental strand, 41812200 - 41812161
Alignment:
Q  371 tctgtatcgttccaattttatcggatgtccctgaagggac 410  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  41812200 tctgtatcgttccaattttatcggatgtccccgaagggac 41812161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 410
Target Start/End: Original strand, 32087967 - 32088006
Alignment:
Q  371 tctgtatcgttccaattttatcggatgtccctgaagggac 410  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  32087967 tctgtatcgttccaattttatcagatgtccccgaagggac 32088006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 373 - 411
Target Start/End: Complemental strand, 6760131 - 6760093
Alignment:
Q  373 tgtatcgttccaattttatcggatgtccctgaagggact 411  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6760131 tgtatcgttccaattttatcggatgtccctgaagggact 6760093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 410
Target Start/End: Original strand, 31142005 - 31142044
Alignment:
Q  371 tctgtatcgttccaattttatcggatgtccctgaagggac 410  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  31142005 tctgtatcgttccaattttatcggatgtccccgaagggac 31142044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 34470065 - 34470024
Alignment:
Q  371 tctgtatcgttccaattttatcggatgtccctgaagggactg 412  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  34470065 tctgtatcattccaattttatcggatgtccccgaagggactg 34470024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 409
Target Start/End: Original strand, 520521 - 520557
Alignment:
Q  373 tgtatcgttccaattttatcggatgtccctgaaggga 409  Q
    |||||||||||||||||||||||||| || |||||||    
T  520521 tgtatcgttccaattttatcggatgttccggaaggga 520557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 411
Target Start/End: Complemental strand, 17013919 - 17013883
Alignment:
Q  375 tatcgttccaattttatcggatgtccctgaagggact 411  Q
    |||||||||||||||||||||||||||||||||||||    
T  17013919 tatcgttccaattttatcggatgtccctgaagggact 17013883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 410
Target Start/End: Complemental strand, 8058757 - 8058720
Alignment:
Q  373 tgtatcgttccaattttatcggatgtccctgaagggac 410  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  8058757 tgtatcgctccaattttatcggatgtccccgaagggac 8058720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 408
Target Start/End: Complemental strand, 50823428 - 50823392
Alignment:
Q  372 ctgtatcgttccaattttatcggatgtccctgaaggg 408  Q
    |||||||||||||||||||||||||||||||||||||    
T  50823428 ctgtatcgttccaattttatcggatgtccctgaaggg 50823392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 408
Target Start/End: Original strand, 50852433 - 50852469
Alignment:
Q  372 ctgtatcgttccaattttatcggatgtccctgaaggg 408  Q
    |||||||||||||||||||||||||||||||||||||    
T  50852433 ctgtatcgttccaattttatcggatgtccctgaaggg 50852469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 410
Target Start/End: Original strand, 38044578 - 38044617
Alignment:
Q  371 tctgtatcgttccaattttatcggatgtccctgaagggac 410  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  38044578 tctgtatcgttccaattttatcggatgtccccgaagggac 38044617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 410
Target Start/End: Complemental strand, 48838026 - 48837987
Alignment:
Q  371 tctgtatcgttccaattttatcggatgtccctgaagggac 410  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  48838026 tctgtatcgttccaattttatcggatgtccccgaagggac 48837987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 410
Target Start/End: Complemental strand, 147978 - 147942
Alignment:
Q  374 gtatcgttccaattttatcggatgtccctgaagggac 410  Q
    |||||||||||||||||||||||||||| ||||||||    
T  147978 gtatcgttccaattttatcggatgtccccgaagggac 147942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 406
Target Start/End: Complemental strand, 50904025 - 50903990
Alignment:
Q  371 tctgtatcgttccaattttatcggatgtccctgaag 406  Q
    ||||||||||||||||||||||||||||||| ||||    
T  50904025 tctgtatcgttccaattttatcggatgtccccgaag 50903990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 22968727 - 22968767
Alignment:
Q  370 ttctgtatcgttccaattttatcggatgtccctgaagggac 410  Q
    |||| ||||||| |||||||||||||||||||| |||||||    
T  22968727 ttctatatcgtttcaattttatcggatgtccctcaagggac 22968767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 410
Target Start/End: Original strand, 21634863 - 21634902
Alignment:
Q  371 tctgtatcgttccaattttatcggatgtccctgaagggac 410  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  21634863 tctgtatcgttccaattttatcggatgtccccgaagggac 21634902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Original strand, 10583099 - 10583135
Alignment:
Q  371 tctgtatcgttccaattttatcggatgtccctgaagg 407  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  10583099 tctgtatcgtttcaattttatcggatgtccccgaagg 10583135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 410
Target Start/End: Original strand, 26217291 - 26217330
Alignment:
Q  371 tctgtatcgttccaattttatcggatgtccctgaagggac 410  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  26217291 tctgtatcgttccaattttatcggatgtccccgaagggac 26217330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 7618987 - 7619028
Alignment:
Q  371 tctgtatcgttccaattttatcggatgtccctgaagggactg 412  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  7618987 tctgtatcattccaattttatcggatgtccccgaagggactg 7619028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 411
Target Start/End: Complemental strand, 20940575 - 20940534
Alignment:
Q  370 ttctgtatcgttccaattttatcggatgtccctgaagggact 411  Q
    |||| ||||||| ||||||||||||||||||| |||||||||    
T  20940575 ttctttatcgtttcaattttatcggatgtccccgaagggact 20940534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University