View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18485_high_9 (Length: 333)
Name: NF18485_high_9
Description: NF18485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18485_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 333
Target Start/End: Original strand, 32188912 - 32189237
Alignment:
| Q |
8 |
agattatactcaccttacaaatttattatataactatgtatgtcaacattctctgaacctacaaactcctaaaatagaattcgcctaaactttttattat |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32188912 |
agataatactcaccttacaaatttattatataactatgtatgtcaacattctctgatcctacgaactcctaaaatagaattcgcctaaactttttattat |
32189011 |
T |
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| Q |
108 |
aaaaaagagagaagcatatagtaaattatgaaatcaaaaagtggagtagacagtgacacttttgatctctttggacttccctattctataaatacttgag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32189012 |
aaaaaagagagaagcatatagtaaattatgaaatcaaaaagtggagtagatagtgacacttttgatgtctttggacttccctattctataaatacttgag |
32189111 |
T |
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| Q |
208 |
agcccccttctcttgtcctcaatatttagttaccattaccacttgagttcttgtgtctgagctttctcatctccaaaggcacagcacagtctaaaagcta |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32189112 |
agcccccttctcttgtcctcaatatttagttaccattaccacttgagttcttgtgtctaagctttctcatctccaaaggcacagcacagtctaaaagcta |
32189211 |
T |
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| Q |
308 |
gctcttcatagtcatacttatgtctt |
333 |
Q |
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|||||||||||||||||||||||||| |
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| T |
32189212 |
gctcttcatagtcatacttatgtctt |
32189237 |
T |
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