View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18485_low_11 (Length: 285)

Name: NF18485_low_11
Description: NF18485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18485_low_11
NF18485_low_11
[»] chr8 (2 HSPs)
chr8 (137-269)||(10820586-10820715)
chr8 (210-250)||(36146674-36146714)
[»] chr4 (2 HSPs)
chr4 (154-253)||(18177680-18177775)
chr4 (203-253)||(3120109-3120159)
[»] chr3 (1 HSPs)
chr3 (154-253)||(13216319-13216414)
[»] scaffold0002 (1 HSPs)
scaffold0002 (189-251)||(241297-241359)
[»] chr5 (1 HSPs)
chr5 (203-251)||(19164841-19164889)


Alignment Details
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 137 - 269
Target Start/End: Complemental strand, 10820715 - 10820586
Alignment:
Q  137 tagataatactgtttgttcatgattttgatagtcatactaatgagtgacttcgaggagatttcttgaaaaatatttagtgttcatttcggccaactctcg 236  Q
    ||||| ||| ||||||||||||||||||||||||||| |   ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  10820715 tagattatattgtttgttcatgattttgatagtcatagt---gagtgacttagaggagatttcttgaaaagtatttagtgttcatttcggccaactctcg 10820619  T
Q  237 attatctttctttggctaatgacatgtatttct 269  Q
    |||||||||||||||| ||||||||||||||||    
T  10820618 attatctttctttggcgaatgacatgtatttct 10820586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 36146674 - 36146714
Alignment:
Q  210 tttagtgttcatttcggccaactctcgattatctttctttg 250  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36146674 tttagtgttcatttcggccaactctcgattatctttctttg 36146714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 18177775 - 18177680
Alignment:
Q  154 tcatgattttgatagtcatactaatgagtgacttcgaggagatttcttgaaaaatatttagtgttcatttcggccaactctcgattatctttctttggct 253  Q
    ||||||||| ||||| |||||||    |||| || |||||||||||  ||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  18177775 tcatgatttcgatagccatacta----gtgatttagaggagatttcccgaaaagtatttagtgctcatttcggccaactctccattatctttctttggct 18177680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 3120159 - 3120109
Alignment:
Q  203 aaaaatatttagtgttcatttcggccaactctcgattatctttctttggct 253  Q
    |||||||||||||| ||||||  |||||||||| |||||||||||||||||    
T  3120159 aaaaatatttagtgctcatttaagccaactctccattatctttctttggct 3120109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 154 - 253
Target Start/End: Original strand, 13216319 - 13216414
Alignment:
Q  154 tcatgattttgatagtcatactaatgagtgacttcgaggagatttcttgaaaaatatttagtgttcatttcggccaactctcgattatctttctttggct 253  Q
    ||||||||| ||||| |||||||    |||| || |||||||||||  ||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  13216319 tcatgatttcgatagccatacta----gtgatttagaggagatttcccgaaaagtatttagtgctcatttcggccaactctccattatctttctttggct 13216414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 241359 - 241297
Alignment:
Q  189 gaggagatttcttgaaaaatatttagtgttcatttcggccaactctcgattatctttctttgg 251  Q
    |||||||||||| ||||| | ||||||| ||||||||| ||||| || |||||||||||||||    
T  241359 gaggagatttctagaaaagtttttagtgctcatttcgggcaactttccattatctttctttgg 241297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 19164889 - 19164841
Alignment:
Q  203 aaaaatatttagtgttcatttcggccaactctcgattatctttctttgg 251  Q
    |||| ||||||||| |||||| ||||||||||| |||||||||||||||    
T  19164889 aaaagtatttagtgctcatttaggccaactctccattatctttctttgg 19164841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University