View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18485_low_13 (Length: 262)
Name: NF18485_low_13
Description: NF18485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18485_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 5329306 - 5329542
Alignment:
| Q |
11 |
cacagaagcagcactttatggtggcaactcagtgtattatgatggctccatgataaaagcagctgcaatttcaaacaatgagtatatggccatgatgaag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5329306 |
cacagaagcagcactttatggtggcaactcagtgtattatgatggctccatgataaaagcagctgcaatttcaaacaatgagtatatggccatgatgaag |
5329405 |
T |
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| Q |
111 |
cgcatggctgaacttgaagagaaagtcactgttctcagtgttaagcctgtcatgcctccagaaaaagaggaaatgcttaataatgctctaaccagagtca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5329406 |
cgcatggctgaacttgaagagaaagtcactgttctcagtgttaagcctgtcatgcctccagaaaaagaggaaatgcttaataatgctctaaccagagtca |
5329505 |
T |
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| Q |
211 |
gtactcttgaacaggagttgggtgcaaccaaaaaggt |
247 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
5329506 |
gtactcttgaacaggagttgggtgcaaccaaaaaggt |
5329542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 54775469 - 54775705
Alignment:
| Q |
11 |
cacagaagcagcactttatggtggcaactcagtgtattatgatggctccatgataaaagcagctgcaatttcaaacaatgagtatatggccatgatgaag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775469 |
cacagaagcagcactttatggtggcaactcagtgtattatgatggctccatgataaaagcagctgcaatttcaaacaatgagtatatggccatgatgaag |
54775568 |
T |
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| Q |
111 |
cgcatggctgaacttgaagagaaagtcactgttctcagtgttaagcctgtcatgcctccagaaaaagaggaaatgcttaataatgctctaaccagagtca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775569 |
cgcatggctgaacttgaagagaaagtcactgttctcagtgttaagcctgtcatgcctccagaaaaagaggaaatgcttaataatgctctaaccagagtca |
54775668 |
T |
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| Q |
211 |
gtactcttgaacaggagttgggtgcaaccaaaaaggt |
247 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
54775669 |
gtactcttgaacaggagttgggtgcaaccaaaaaggt |
54775705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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