View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18485_low_5 (Length: 494)

Name: NF18485_low_5
Description: NF18485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18485_low_5
NF18485_low_5
[»] chr8 (2 HSPs)
chr8 (8-376)||(41311027-41311395)
chr8 (13-365)||(43164710-43165062)
[»] chr7 (7 HSPs)
chr7 (13-300)||(30165608-30165883)
chr7 (8-355)||(30124981-30125328)
chr7 (111-226)||(28180965-28181080)
chr7 (141-251)||(30131068-30131178)
chr7 (141-247)||(30120068-30120174)
chr7 (319-364)||(28180514-28180559)
chr7 (10-43)||(30130934-30130967)
[»] chr2 (2 HSPs)
chr2 (126-359)||(21426470-21426703)
chr2 (280-364)||(21430161-21430244)
[»] scaffold1051 (1 HSPs)
scaffold1051 (281-349)||(1971-2039)


Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 376
Target Start/End: Original strand, 41311027 - 41311395
Alignment:
Q  8 attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41311027 attgcgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag 41311126  T
Q  108 agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41311127 agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata 41311226  T
Q  208 aatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatt 307  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41311227 aaccagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatt 41311326  T
Q  308 tgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagataccatgtatttttat 376  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41311327 tgttcccattgattacctctcaatgagaaaatctccaagtcaattgaactagataccatgtatttttat 41311395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 365
Target Start/End: Original strand, 43164710 - 43165062
Alignment:
Q  13 gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa 112  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| || || ||||| |||||||||||   | | |||  ||    
T  43164710 gtattcttgcattacccatatcttaagtgtagacatctccatattccatacgctgataagtccgcgaagtaccaacaaatcataaaggttgggagaaaaa 43164809  T
Q  113 tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca 212  Q
    |||||||||||| ||||||| |||||| ||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||| || || ||||| ||    
T  43164810 tcactataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaacca 43164909  T
Q  213 gccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttc 312  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| | ||  ||| ||||||||  |||||||||||||||||||||||||||||||||    
T  43164910 gccaatgaatagaaccattcaagaacgacccgactctgggagcaccttcaggtctttcagtattccaataaggcaaatcagaatcaaactcaatttgttc 43165009  T
Q  313 ccattgattacctctcaatgagaacatctccaagtcaattgaactagatacca 365  Q
    ||||| |||| ||||||||||||| |||||||||||||| |||||||||||||    
T  43165010 ccattcattagctctcaatgagaaaatctccaagtcaatcgaactagatacca 43165062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 8e-56; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 30165883 - 30165608
Alignment:
Q  13 gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa 112  Q
    |||||||||||||||||||||||||| ||||| | |||||| |||||||||||| |||||||    |||||||| ||||||||||||||               
T  30165883 gtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatcataaattc----------- 30165795  T
Q  113 tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca 212  Q
     ||| | || || ||| ||| |||||  |||||| || ||||  ||||||||||||||||||||||||||||||||||||||||| || || ||||| ||    
T  30165794 -cacgagaacaatcatttggaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatccatttcagtctgataattataaacca 30165696  T
Q  213 gccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaa 300  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||  ||| |||||||||||| |||||||||    
T  30165695 gccaatgaatagaaccattgaagaacgacccaactctgggaccaccttcagagcatgcagggttcctataaggcaaatgagaatcaaa 30165608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 8 - 355
Target Start/End: Original strand, 30124981 - 30125328
Alignment:
Q  8 attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag 107  Q
    |||| |||||| |||||||||| |||||||| || |  |||||| | | |||||| ||| |||||||  |||||||| | ||||||||||  |  || ||    
T  30124981 attgcgtattcatgcatcacccgtatcttaactgcatccatctcaagaatccataaactgataagtccaccaaatactaacaaatcataatctacaggag 30125080  T
Q  108 agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata 207  Q
    |||||||  |||||||| ||| ||| |||||  | ||||||| ||||  |||||||||||||||||||| |||||||||| | |  |||| || || ||     
T  30125081 agtaatcggtataaaaatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacatccttgttggtctcatgattatg 30125180  T
Q  208 aatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatt 307  Q
    || ||||||||||||||  |||||||||||| ||||||||||||| |  || |||||||  ||||||||| |||||||||||| ||||||||||||||||    
T  30125181 aaccagccaatgaatagtcccattcaagaacaacccaactctgggccatccgttagagcgagcagtattcctataaggcaaatgagaatcaaactcaatt 30125280  T
Q  308 tgttcccattgattacctctcaatgagaacatctccaagtcaattgaa 355  Q
    |  ||||| | |||| ||||||||| ||| ||||||||||||||||||    
T  30125281 tcctcccacttattagctctcaatgggaaaatctccaagtcaattgaa 30125328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 28180965 - 28181080
Alignment:
Q  111 aatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaat 210  Q
    |||| ||||||||| ||||||| |||||  | ||||||| |||||||||||||||||||||||||||||||||| | ||||  |||| || || |||||     
T  28180965 aatccctataaaaatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaac 28181064  T
Q  211 cagccaatgaatagaa 226  Q
    ||||||||||||||||    
T  28181065 cagccaatgaatagaa 28181080  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 141 - 251
Target Start/End: Original strand, 30131068 - 30131178
Alignment:
Q  141 tctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacga 240  Q
    ||||||||| ||||||||||||||||| |||||| |||||||||||| ||   |||| || || ||||| ||||||||||||||  |||||||||||| |    
T  30131068 tctctgacattgtcatttcctttaaattaaaggctataataacatcccttcttgtctcataattataaaccagccaatgaatagccccattcaagaacaa 30131167  T
Q  241 cccaactctgg 251  Q
    ||| |||||||    
T  30131168 cccgactctgg 30131178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 247
Target Start/End: Original strand, 30120068 - 30120174
Alignment:
Q  141 tctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacga 240  Q
    ||||||| | |||| |||||||||||||||||||||||||||||| ||| |  |||| || || || || || |||||||||||  |||||||||||| |    
T  30120068 tctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaa 30120167  T
Q  241 cccaact 247  Q
    |||||||    
T  30120168 cccaact 30120174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 364
Target Start/End: Original strand, 28180514 - 28180559
Alignment:
Q  319 attacctctcaatgagaacatctccaagtcaattgaactagatacc 364  Q
    |||| ||||||||||||| ||||| || ||||||||||||||||||    
T  28180514 attagctctcaatgagaaaatctctaattcaattgaactagatacc 28180559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 30130934 - 30130967
Alignment:
Q  10 tgtgtattcttgcatcacccatatcttaagtgta 43  Q
    ||||||||||||||||||||||||||||| ||||    
T  30130934 tgtgtattcttgcatcacccatatcttaactgta 30130967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 126 - 359
Target Start/End: Complemental strand, 21426703 - 21426470
Alignment:
Q  126 catctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaataga 225  Q
    ||||||| |||||  ||||||||| |||  ||||||||||||||| ||||||||||||||||   |  |||| |  || || || ||||||||||||||     
T  21426703 catctggaagagctatctctgacattgttgtttcctttaaatcaagggcaataataacatcccggttggtctcagaattatgaaccagccaatgaatagc 21426604  T
Q  226 accattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacct 325  Q
     ||||| ||||||||||| |||||||| | |   | | ||    ||||| |  |||||||||||| |||| ||| ||||||||||| ||||| || | ||    
T  21426603 cccatttaagaacgacccgactctgggccgaaattcatagacatcagtaatgatataaggcaaatgagaagcaacctcaatttgtttccatttatgagct 21426504  T
Q  326 ctcaatgagaacatctccaagtcaattgaactag 359  Q
    ||||||||||| |||| |||||||||||||||||    
T  21426503 ctcaatgagaaaatcttcaagtcaattgaactag 21426470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 21430244 - 21430161
Alignment:
Q  280 ataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagatacc 364  Q
    ||||||||||| |||| ||| |||||||| |||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  21430244 ataaggcaaatgagaagcaacctcaattttttcc-attgattagctctcaatgagaaaatctctaagtcaattgaactagatacc 21430161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1051 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 1971 - 2039
Alignment:
Q  281 taaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtca 349  Q
    |||||||||  |||| ||||||||||||||| ||| | |||| ||||||||||||| ||||||||||||    
T  1971 taaggcaaaggagaaccaaactcaatttgtttccacttattagctctcaatgagaaaatctccaagtca 2039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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