View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18485_low_6 (Length: 493)
Name: NF18485_low_6
Description: NF18485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18485_low_6 |
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| [»] scaffold0040 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 4 - 478
Target Start/End: Original strand, 355988 - 356464
Alignment:
| Q |
4 |
aaatagtgagtctatgctaatcaaatagcttgaccttctaaaaatgacgcaacagttagaatctaaaaatgctttggatggtgaggccaacgttagcacc |
103 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
355988 |
aaatagtgagtctatgctaatcaaatagcttgacctccgaaaaatgacgcgacagttagaatctaaaaatgctttggatggtgaggccaatgttagcacc |
356087 |
T |
|
| Q |
104 |
tttaataacattggttccactactggtccagttgctcagttaactaccaaagttgtggggaca--ggttctcagtatatgaatgcttctaagctgaaaca |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
356088 |
tttaataacattggttccactactggtccagttgctcagttaactaccaaagttgtggggacaaaggttcttagtatatgaatgcttctaagctgaaaca |
356187 |
T |
|
| Q |
202 |
gggtaatattcaggttaatacttctgccaaaggtagtttgtggcccgttgctggtaagaaccacacgcagaacaagatcaatcacactgatttggccaga |
301 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
356188 |
gggtaatattcaagttaatacttctgccaaaggtagtttgtggcccgttgctggtaagaaccacacgcagaacaagatcaatcacactgatttggccaga |
356287 |
T |
|
| Q |
302 |
ggttctacggtagatgctggtaaggattcaacttttgaccctaagacattggattatgcaagcaaggctaatgcagttgctgccaatgattttcctgagg |
401 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
356288 |
ggttctatggtagatgctggtaaggattcaacttttgaccctaagacattggattatgcaagcaaggctaatgcatttgctgccaatgattttcctgagg |
356387 |
T |
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| Q |
402 |
ttggtgctagctctgcctttgttgtagggtctgattctgcatgacatttaaatcatgatgatgttatgatcaattct |
478 |
Q |
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| T |
356388 |
ttggtgctagctctgcctttgttgtagagtctgactctgcacgacatttaaatcatgatcatgttatgatcaattct |
356464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 58 - 478
Target Start/End: Original strand, 10582113 - 10582509
Alignment:
| Q |
58 |
gttagaatctaaaaatgctttggatggtgaggccaacgttagcacctttaataacattggttccactactggtccagttgctcagttaactaccaaagtt |
157 |
Q |
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|||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
10582113 |
gttagaatctgaaaatgctttggatggtgatgc--------gcacctttaataacattggttccactactggtgcagttcctcagttaactaccaaagtt |
10582204 |
T |
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| Q |
158 |
gtggggacaggttctcagtatatgaatgcttctaagctgaaacagggtaatattcaggttaatacttctgccaaaggtagtttgtggcccgttgctggta |
257 |
Q |
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|||| | || ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10582205 |
gtggacaaagattctcaggatatgaatgcttctaag---------------atacaggttaatacttctgccaaaggtagtttgaggcccgttgctggta |
10582289 |
T |
|
| Q |
258 |
agaaccacacgcagaacaagatcaatcacactgatttggccagaggttctacggtagatgctggtaaggattcaacttttgaccctaagacattggatta |
357 |
Q |
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| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
10582290 |
a-aactacacgcagaacaagatcaatcacactgatttggccagaggttcaacggtagatgctggtaaggattcaacttttgacccttagacactggattt |
10582388 |
T |
|
| Q |
358 |
tgcaagcaaggctaatgcagttgctgccaatgattttcctgaggttggtgctagctctgcctttgttgtagggtctgattctgcatgacatttaaatcat |
457 |
Q |
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||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
10582389 |
tgcaagcaaggctgatgtagttgctgccaattattttcctgaggttggtgctagctctgcctttgttgtagagtctgattctgcacaacatttaaatcat |
10582488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 6109624 - 6109668
Alignment:
| Q |
8 |
agtgagtctatgctaatcaaatagcttgaccttctaaaaatgacgc |
53 |
Q |
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| T |
6109624 |
agtgagtctatgctaatc-aatagcttgacctccgaaaaatgacgc |
6109668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 40389203 - 40389149
Alignment:
| Q |
4 |
aaatagtgagtctatgctaatcaaatagcttgaccttctaaaaatgacgcaacag |
58 |
Q |
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||||||||||||||||||||||||||||||||| || | ||||||||||| |||| |
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| T |
40389203 |
aaatagtgagtctatgctaatcaaatagcttgatctccgaaaaatgacgcgacag |
40389149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 40385610 - 40385563
Alignment:
| Q |
4 |
aaatagtgagtctatgctaatcaaatagcttgaccttctaaaaatgac |
51 |
Q |
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| T |
40385610 |
aaataatgagtctatgctaatcaaatagcttgatctccgaaaaatgac |
40385563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 2227221 - 2227267
Alignment:
| Q |
7 |
tagtgagtctatgctaatcaaatagcttgaccttctaaaaatgacgc |
53 |
Q |
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|||||||||||||||||| |||||||||||||| | ||||||||||| |
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| T |
2227221 |
tagtgagtctatgctaataaaatagcttgacctccgaaaaatgacgc |
2227267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 24636 - 24586
Alignment:
| Q |
7 |
tagtgagtctatgctaatcaaatagcttgaccttctaaaaatgacgcaaca |
57 |
Q |
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||||||||| ||||||| |||||||||||| || | ||||||||||||||| |
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| T |
24636 |
tagtgagtcaatgctaaccaaatagcttgatctccgaaaaatgacgcaaca |
24586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 18229381 - 18229423
Alignment:
| Q |
11 |
gagtctatgctaatcaaatagcttgaccttctaaaaatgacgc |
53 |
Q |
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| T |
18229381 |
gagtctatgctaatcaaataacttgacctccgaaaaatgacgc |
18229423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 8815967 - 8815918
Alignment:
| Q |
4 |
aaatagtgagtctatgctaatcaaatagcttgaccttctaaaaatgacgc |
53 |
Q |
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||||||||||| | ||||||||||||||||||| || | ||||||||||| |
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| T |
8815967 |
aaatagtgagtatgtgctaatcaaatagcttgatctccgaaaaatgacgc |
8815918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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