View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18485_low_7 (Length: 442)
Name: NF18485_low_7
Description: NF18485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18485_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 3824872 - 3824448
Alignment:
| Q |
1 |
caaatttatatttaaggtgaccatataaaatgctgccactattctaaattcctggatccgtcactgattttgacatttctatcattttcaactgctaaca |
100 |
Q |
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| T |
3824872 |
caaatttatatttaaggtgcccatataaaatgctgccactattctaaattcctggatccgtcactgattttgacatttctatcattttcaattgctaaca |
3824773 |
T |
|
| Q |
101 |
aagtataatttttcttaaaacaaacaactaaaaaatcatctcactttactctattaatttccttacatactttctttacttttcttaaccaaacaaaatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3824772 |
aagtataatttttcttaaaacaaacaactaaaaaatcatctcattttactctcttaatttccttacatattttctttacttttcttaaccaaacaaaatg |
3824673 |
T |
|
| Q |
201 |
taatagattggaatgagttagtccgtaacctaaatctatattaactttagtgaatttctgtactgatgtagaatctcacacttttcgtgtactataataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3824672 |
taatagattggaatgagttagtccgtaacctaaatctatattaactttagtgaatttctgtactgatgtagaatctcacacttttcgtgtactataataa |
3824573 |
T |
|
| Q |
301 |
tgcacttttattggtgtagtagtttagattctttcgaacgtgtcattggttttagccttagatgttgtcctcattatgatattttttgatataaaaagtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3824572 |
tgcacttttattggtgtagtagtttagattctttcgaacgtgtcattggttttagccttagatgttgtcctcattacgatattttttgatataaaaagtt |
3824473 |
T |
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| Q |
401 |
gtgggtttggtttgggtgtgttgaa |
425 |
Q |
| |
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| T |
3824472 |
gtgggtttggtttgggtgtgttgaa |
3824448 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 147
Target Start/End: Complemental strand, 39911791 - 39911753
Alignment:
| Q |
109 |
tttttcttaaaacaaacaactaaaaaatcatctcacttt |
147 |
Q |
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| T |
39911791 |
tttttcttaaaccaaacaactaaaaaatcatctcacttt |
39911753 |
T |
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