View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18485_low_9 (Length: 396)
Name: NF18485_low_9
Description: NF18485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18485_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 12 - 374
Target Start/End: Complemental strand, 3542538 - 3542176
Alignment:
| Q |
12 |
atcatcattgtaaaaaggaccagacactagaataatttattcaatgaaaataaccaccaaaaagagtccgaaacctgtgttttgttaacagcaaatcgaa |
111 |
Q |
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| T |
3542538 |
atcatcattgtaaaaaggaccagagactagaataatttattcaatgaaaataaccaccaaaaagagtccgaaacctgtgttttgttaacagcaaatcgaa |
3542439 |
T |
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| Q |
112 |
gctgtcctaactcggattttagtgccaaaatgaattcgtcgtttaatctgcagaacttaagagtcacggtgcattgatataaaaacagactcaacacaac |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
3542438 |
gctgtcctaactcggattttagtgccaaaatgaattcgtcgtttaatctgcagaacttaagagtcacggtgcattgatataaaaatagactcagcacaac |
3542339 |
T |
|
| Q |
212 |
agaatatagagatgaatcccattcatctgaaaagtactacaaaccgtggtctcattcttgcaatctcaaattcaatctcctgagcttcagtgtcaagcaa |
311 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3542338 |
agaatatagaggtgaatcccattcatttgaaaagtactacaaaccgtggtctcattcttgcaatctcaaattcaatctcctgagcttcagtgtcaagcaa |
3542239 |
T |
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| Q |
312 |
gtattcaatgaggtcttgtggagtatcaggaacatcacgagactaagcaaatgaaaaataaga |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3542238 |
gtattcaatgaggtcttgtggagtatcaggaacatcacgagactaagcaaatgaaaaataaga |
3542176 |
T |
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