View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18486_high_12 (Length: 312)

Name: NF18486_high_12
Description: NF18486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18486_high_12
NF18486_high_12
[»] chr1 (31 HSPs)
chr1 (57-301)||(34490289-34490535)
chr1 (2-166)||(34490092-34490256)
chr1 (1-83)||(29167849-29167931)
chr1 (1-110)||(25238436-25238546)
chr1 (57-166)||(5831633-5831743)
chr1 (1-149)||(29677124-29677263)
chr1 (53-166)||(29676984-29677097)
chr1 (54-166)||(5855202-5855315)
chr1 (90-166)||(13351020-13351096)
chr1 (53-163)||(13350889-13351000)
chr1 (53-133)||(9929869-9929950)
chr1 (53-164)||(5855012-5855123)
chr1 (1-160)||(5831442-5831602)
chr1 (3-133)||(517454-517585)
chr1 (3-133)||(34364169-34364299)
chr1 (56-117)||(38244801-38244863)
chr1 (2-133)||(38951840-38951976)
chr1 (53-149)||(2570005-2570101)
chr1 (54-166)||(38952005-38952118)
chr1 (74-151)||(28499644-28499722)
chr1 (1-164)||(42604114-42604288)
chr1 (53-134)||(2569891-2569975)
chr1 (61-133)||(9929662-9929735)
chr1 (92-132)||(25238613-25238653)
chr1 (88-158)||(29168549-29168620)
chr1 (107-166)||(34941703-34941762)
chr1 (57-166)||(29167710-29167818)
chr1 (88-166)||(34364363-34364441)
chr1 (55-104)||(17227498-17227548)
chr1 (53-102)||(24708074-24708124)
chr1 (53-133)||(2995938-2996018)
[»] scaffold1126 (2 HSPs)
scaffold1126 (1-160)||(248-409)
scaffold1126 (57-166)||(106-217)
[»] chr2 (15 HSPs)
chr2 (1-160)||(30906090-30906251)
chr2 (2-158)||(43900439-43900597)
chr2 (53-163)||(1400675-1400786)
chr2 (53-166)||(28527222-28527335)
chr2 (1-155)||(45305881-45306036)
chr2 (53-133)||(33667412-33667493)
chr2 (60-156)||(41212411-41212507)
chr2 (56-166)||(30905949-30906060)
chr2 (1-78)||(1400813-1400891)
chr2 (1-133)||(7378508-7378640)
chr2 (1-83)||(28527362-28527444)
chr2 (83-128)||(33667279-33667324)
chr2 (1-57)||(33667328-33667385)
chr2 (68-164)||(34175049-34175146)
chr2 (53-112)||(43900625-43900685)
[»] chr6 (38 HSPs)
chr6 (3-149)||(22608281-22608428)
chr6 (1-118)||(33815055-33815174)
chr6 (1-158)||(3222343-3222501)
chr6 (53-166)||(2835059-2835173)
chr6 (53-149)||(9068502-9068599)
chr6 (53-163)||(30056027-30056139)
chr6 (32-157)||(23595066-23595192)
chr6 (3-118)||(10304741-10304858)
chr6 (3-166)||(9474537-9474697)
chr6 (53-164)||(2430507-2430619)
chr6 (57-164)||(24386312-24386420)
chr6 (53-134)||(10304631-10304712)
chr6 (53-155)||(7706773-7706877)
chr6 (59-129)||(7915696-7915767)
chr6 (53-134)||(138645-138727)
chr6 (53-134)||(146666-146748)
chr6 (58-159)||(11108173-11108275)
chr6 (53-109)||(2430649-2430706)
chr6 (57-164)||(20084581-20084689)
chr6 (94-160)||(138826-138892)
chr6 (94-160)||(146847-146913)
chr6 (75-132)||(11108102-11108160)
chr6 (92-160)||(7915606-7915675)
chr6 (57-163)||(22608461-22608571)
chr6 (60-114)||(2365649-2365704)
chr6 (53-134)||(9068328-9068409)
chr6 (83-147)||(13767125-13767189)
chr6 (90-166)||(18980411-18980487)
chr6 (53-103)||(15341434-15341485)
chr6 (1-66)||(138754-138820)
chr6 (1-66)||(146775-146841)
chr6 (56-133)||(3222532-3222610)
chr6 (74-159)||(23595259-23595345)
chr6 (59-119)||(7706935-7706996)
chr6 (53-104)||(15341645-15341697)
chr6 (53-104)||(15341857-15341909)
chr6 (53-104)||(19846303-19846355)
chr6 (90-166)||(20084739-20084815)
[»] chr4 (30 HSPs)
chr4 (3-164)||(17633382-17633545)
chr4 (1-164)||(9808979-9809144)
chr4 (1-160)||(16583505-16583666)
chr4 (1-164)||(9810665-9810830)
chr4 (54-145)||(24669271-24669363)
chr4 (5-158)||(19596691-19596848)
chr4 (57-166)||(1966733-1966841)
chr4 (2-133)||(8740831-8740964)
chr4 (51-166)||(14351157-14351273)
chr4 (1-119)||(35544459-35544578)
chr4 (1-159)||(55666865-55667023)
chr4 (74-164)||(17633242-17633333)
chr4 (1-79)||(1966872-1966950)
chr4 (3-131)||(2433654-2433779)
chr4 (1-77)||(33249655-33249732)
chr4 (53-133)||(42908665-42908745)
chr4 (1-134)||(14350999-14351132)
chr4 (1-118)||(42908520-42908638)
chr4 (1-166)||(33179798-33179965)
chr4 (60-149)||(9810866-9810957)
chr4 (56-166)||(19596882-19596994)
chr4 (83-159)||(19746945-19747021)
chr4 (83-159)||(19792785-19792861)
chr4 (53-118)||(24669123-24669190)
chr4 (90-160)||(25007632-25007701)
chr4 (57-166)||(8740692-8740796)
chr4 (60-149)||(9809178-9809270)
chr4 (92-166)||(8740600-8740669)
chr4 (125-166)||(15523144-15523185)
chr4 (28-80)||(20874823-20874875)
[»] chr7 (24 HSPs)
chr7 (1-160)||(31303362-31303523)
chr7 (1-160)||(20556675-20556836)
chr7 (53-160)||(28805115-28805223)
chr7 (1-160)||(18312736-18312896)
chr7 (1-160)||(4290736-4290896)
chr7 (2-153)||(5083832-5083984)
chr7 (57-166)||(4290927-4291037)
chr7 (53-134)||(22033157-22033239)
chr7 (3-131)||(15958358-15958485)
chr7 (54-166)||(32964849-32964962)
chr7 (53-155)||(21589720-21589823)
chr7 (53-166)||(5083691-5083804)
chr7 (53-134)||(18312923-18313005)
chr7 (28-160)||(21548362-21548494)
chr7 (56-166)||(31303553-31303663)
chr7 (53-166)||(21548549-21548662)
chr7 (74-166)||(28804885-28804978)
chr7 (1-118)||(21589574-21589693)
chr7 (53-126)||(15958251-15958325)
chr7 (53-134)||(20556866-20556948)
chr7 (74-166)||(22740059-22740152)
chr7 (74-134)||(22032995-22033056)
chr7 (96-166)||(26240202-26240271)
chr7 (53-128)||(32964694-32964769)
[»] chr3 (43 HSPs)
chr3 (4-159)||(3823561-3823720)
chr3 (4-160)||(3785871-3786030)
chr3 (4-160)||(19280109-19280265)
chr3 (2-118)||(42637996-42638114)
chr3 (1-134)||(44080191-44080326)
chr3 (1-160)||(9710763-9710918)
chr3 (5-158)||(11509814-11509969)
chr3 (57-166)||(19280298-19280408)
chr3 (1-144)||(26308679-26308824)
chr3 (54-166)||(27335292-27335405)
chr3 (1-119)||(1705709-1705827)
chr3 (3-156)||(27707587-27707741)
chr3 (53-166)||(3823749-3823862)
chr3 (54-166)||(33488334-33488447)
chr3 (68-166)||(5341988-5342087)
chr3 (53-163)||(31545713-31545824)
chr3 (54-159)||(18733573-18733678)
chr3 (2-83)||(31545603-31545685)
chr3 (53-150)||(39126262-39126360)
chr3 (53-149)||(22432427-22432524)
chr3 (53-166)||(3786059-3786170)
chr3 (57-134)||(27040683-27040761)
chr3 (1-112)||(5341833-5341946)
chr3 (53-153)||(33488210-33488314)
chr3 (97-160)||(31545435-31545498)
chr3 (1-70)||(4169144-4169214)
chr3 (57-158)||(26308546-26308648)
chr3 (53-118)||(27079387-27079453)
chr3 (53-118)||(27085184-27085250)
chr3 (75-134)||(11501243-11501303)
chr3 (95-166)||(11510076-11510146)
chr3 (111-166)||(27364905-27364960)
chr3 (53-166)||(11501367-11501481)
chr3 (56-146)||(23163252-23163344)
chr3 (95-163)||(42637860-42637926)
chr3 (53-134)||(4169038-4169117)
chr3 (72-131)||(13358992-13359052)
chr3 (1-119)||(19624256-19624375)
chr3 (1-80)||(22432320-22432400)
chr3 (32-115)||(41571797-41571881)
chr3 (53-166)||(27326163-27326277)
chr3 (53-166)||(27332400-27332514)
chr3 (53-104)||(34164324-34164376)
[»] chr8 (24 HSPs)
chr8 (1-160)||(38606867-38607028)
chr8 (1-134)||(5322001-5322136)
chr8 (33-160)||(31596704-31596832)
chr8 (1-149)||(29367094-29367243)
chr8 (28-156)||(33286130-33286259)
chr8 (1-115)||(5573734-5573850)
chr8 (56-166)||(38606726-38606837)
chr8 (1-133)||(26493376-26493507)
chr8 (4-160)||(1251519-1251676)
chr8 (3-153)||(15233134-15233296)
chr8 (33-149)||(31273634-31273751)
chr8 (53-166)||(5573876-5573991)
chr8 (53-158)||(15714601-15714707)
chr8 (83-160)||(24576183-24576260)
chr8 (1-160)||(32959469-32959630)
chr8 (4-80)||(1240943-1241019)
chr8 (1-112)||(15714734-15714847)
chr8 (92-164)||(28700045-28700117)
chr8 (53-104)||(40502174-40502226)
chr8 (53-107)||(24919870-24919925)
chr8 (54-134)||(15233315-15233396)
chr8 (53-125)||(26914631-26914703)
chr8 (62-134)||(28700245-28700318)
chr8 (53-104)||(40502386-40502438)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-133)||(24060-24195)
[»] chr5 (24 HSPs)
chr5 (2-160)||(22169366-22169526)
chr5 (53-166)||(15221661-15221775)
chr5 (3-108)||(38522009-38522115)
chr5 (1-134)||(19621512-19621646)
chr5 (1-164)||(43461740-43461904)
chr5 (1-83)||(35922719-35922802)
chr5 (1-160)||(13312508-13312668)
chr5 (53-164)||(43262792-43262904)
chr5 (53-166)||(33958879-33958992)
chr5 (57-166)||(42034857-42034967)
chr5 (53-133)||(13312695-13312776)
chr5 (53-166)||(35922829-35922942)
chr5 (28-128)||(36169400-36169501)
chr5 (60-166)||(36169304-36169410)
chr5 (74-160)||(35922617-35922704)
chr5 (53-134)||(22169554-22169636)
chr5 (4-157)||(31189488-31189645)
chr5 (95-163)||(16095519-16095587)
chr5 (1-159)||(33959019-33959178)
chr5 (53-151)||(7155998-7156097)
chr5 (54-133)||(30704321-30704401)
chr5 (92-144)||(31189710-31189762)
chr5 (1-78)||(42034749-42034826)
chr5 (83-150)||(15221554-15221622)
[»] scaffold0126 (2 HSPs)
scaffold0126 (30-160)||(21549-21678)
scaffold0126 (53-162)||(21420-21530)
[»] scaffold0251 (1 HSPs)
scaffold0251 (1-134)||(10654-10789)
[»] scaffold0213 (3 HSPs)
scaffold0213 (55-122)||(24932-25000)
scaffold0213 (53-118)||(25349-25415)
scaffold0213 (60-119)||(24738-24798)
[»] scaffold0043 (1 HSPs)
scaffold0043 (53-149)||(86895-86992)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 57 - 301
Target Start/End: Original strand, 34490289 - 34490535
Alignment:
Q  57 tagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgt 155  Q
    |||||||||||||||| |||||||||| ||| ||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||  ||||    
T  34490289 tagtggtcacgcaactaaaaaaatgtggtcacacagaccatatattttgtaaactgaaatttttcagagtggtacaaagtggtgtacacattaagagtgt 34490388  T
Q  156 ctacctatcatgagaatatgagttttactaatgagaagagtatttcccctagtaaggttattcatgaagtctttgacaaacatcttctctgactcacatt 255  Q
    ||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34490389 ctacctatcataagaatatgggatttactaatgagaagagtatttcccctagtaaggttattcatgaagtctttgacaaacatcttctctgactcacatt 34490488  T
Q  256 attttctatttat-aaaacctcaaaattgctttaattgatcccctat 301  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  34490489 attttctatttataaaaacctcaaaattgctttaattgatcccctat 34490535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 2 - 166
Target Start/End: Complemental strand, 34490256 - 34490092
Alignment:
Q  2 gaaaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtgtcatacagaccatatatt 101  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  34490256 gaaaaatagtggtcatgcgcattttattgcatgaccacattttttagcttctaaatagtggtcatacaactgaaaaaatgtgtcacacagaccatatatt 34490157  T
Q  102 tggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 166  Q
    | ||||||||||||||| || |||||||| ||  | |||||||||||| |||||||||| |||||    
T  34490156 tagttaactgaaattttacatagtggtaccaaaagatatacacattaagggtgtctaccaatcat 34490092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 29167849 - 29167931
Alignment:
Q  1 ggaaaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg 83  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||    
T  29167849 ggaaaaatagtggtcatgcgcattttattgcgtgaccatattttttagcttctaaatagtggtcacgcaactgaaaaaatgtg 29167931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 25238546 - 25238436
Alignment:
Q  1 ggaaaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatata 99  Q
    |||||||||||||| | || ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| || ||||| ||||||||||    
T  25238546 ggaaaaatagtggttacgcacattttattacgtgaccacattttttagcttctaaatagtggtcacgcaactgaaaaaatttgatcatatagaccatata 25238447  T
Q  100 tttggttaact 110  Q
    ||| |||||||    
T  25238446 tttagttaact 25238436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 166
Target Start/End: Original strand, 5831633 - 5831743
Alignment:
Q  57 tagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgt 155  Q
    |||||||||||||||| ||||||| || ||| ||||||||||||||||||||| ||||||||||||||||| ||||||| ||| ||||| ||||||||||    
T  5831633 tagtggtcacgcaactaaaaaaatatggtcacacagaccatatatttggttaattgaaatttttcagagtgatacaaaggggtgtacacgttaaaggtgt 5831732  T
Q  156 ctacctatcat 166  Q
    || ||| ||||    
T  5831733 ctccctgtcat 5831743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 29677124 - 29677263
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtgtcatacagaccatata 99  Q
    |||||||||||||||| || ||||||| |||||||||||||||||| | |||| ||||||||||||| ||||||||||          ||| ||||||||    
T  29677124 ggaaaaatagtggtcacgcacattttagttgcgtgaccacatttttcagcttctaaatagtggtcactcaactgaaaa----------acacaccatata 29677213  T
Q  100 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaa 149  Q
    |||| |||||| |||||||| |||||||||||||| ||| ||||||||||    
T  29677214 tttgtttaacttaaatttttgagagtggtacaaagaggtgtacacattaa 29677263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 29677097 - 29676984
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    ||||||||||||| |||||| |||||||||| ||| |||| |||||||||||||||||| |||||||||| |||| ||||||| |   ||||||||||||    
T  29677097 aaaatagtggtcatgcaact-aaaaaatgtggtcacacaggccatatatttggttaactaaaatttttcaaagtgctacaaagggacgtacacattaaag 29676999  T
Q  152 gtgtctacctatcat 166  Q
    ||||||| |||||||    
T  29676998 gtgtctaactatcat 29676984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 166
Target Start/End: Original strand, 5855202 - 5855315
Alignment:
Q  54 aaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaagg 152  Q
    ||||||||||||||||||| |  ||||||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||||   || |||| ||||  ||    
T  5855202 aaatagtggtcacgcaactaactaaatgtggtcacacataccatatatttggttaacttaaatttttcagagtggtacaaaagagtgtacatattagtgg 5855301  T
Q  153 tgtctacctatcat 166  Q
    ||||||||||||||    
T  5855302 tgtctacctatcat 5855315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 13351020 - 13351096
Alignment:
Q  90 agaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 166  Q
    ||||||||||||||||||| | ||||||||||||||||||||||| ||| |||||||||||| |||||| |||||||    
T  13351020 agaccatatatttggttaagttaaatttttcagagtggtacaaaggggtgtacacattaaagatgtctagctatcat 13351096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 13351000 - 13350889
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    |||||||| | || ||||||||||||| ||| ||| ||| |||||||||||||||||||||||||||  |||||||||||||  ||| |||||||||| |    
T  13351000 aaaatagtagccatgcaactgaaaaaacgtgatcacacataccatatatttggttaactgaaattttcgagagtggtacaaaagggtgtacacattaagg 13350901  T
Q  152 gtgtctacctat 163  Q
     |||||||||||    
T  13350900 atgtctacctat 13350889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 9929869 - 9929950
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaa 133  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||||||| ||||| |||||||||||| | |||||||||    
T  9929869 aaaatagtggtcacgcaaatgaaaaaatgtggtcacacagaccatatatttagttaattgaaatttttcaaaatggtacaaa 9929950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 5855123 - 5855012
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    ||||| |||||||| |||||||||| ||||| ||| |||||||||||||||||||| ||||||||||||| ||| |||||||| | | || |||||||      
T  5855123 aaaattgtggtcacacaactgaaaatatgtggtcacacagaccatatatttggttagctgaaatttttca-agtagtacaaagggatgtaaacattaagc 5855025  T
Q  152 gtgtctacctatc 164  Q
    |||||||||||||    
T  5855024 gtgtctacctatc 5855012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 5831602 - 5831442
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatat 98  Q
    |||||||| ||||| || ||||||||| || || ||||| ||||||||||||| |||||||||||| |||||  | ||||| || ||| ||| |||||||    
T  5831602 ggaaaaattgtggtaatacgcattttagttacgggaccatattttttaacttctaaatagtggtcatgcaacaaacaaaatatgatcacacataccatat 5831503  T
Q  99 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
     ||| ||||||| |||||||||||| || ||||||  ||| ||| ||||||| |||||||||    
T  5831502 ctttagttaactaaaatttttcagaatgttacaaaagggtgtactcattaaa-gtgtctacc 5831442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 133
Target Start/End: Original strand, 517454 - 517585
Alignment:
Q  3 aaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatat 100  Q
    ||||||||| ||||||  ||||||| |||||||| || ||||||||||||| |||||||||| |||||| || |||||||| ||   ||| | |||||||    
T  517454 aaaaatagtagtcatgttcattttagttgcgtgatcatattttttaacttctaaatagtggttacgcaattg-aaaaatgtggttgcacatatcatatat 517552  T
Q  101 ttggttaactgaaatttttcagagtggtacaaa 133  Q
    |||||||||| |||||||| |||||| ||||||    
T  517553 ttggttaacttaaatttttgagagtgatacaaa 517585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 34364299 - 34364169
Alignment:
Q  3 aaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaa-atgtgtcatacagaccatatat 100  Q
    |||||| ||||||| |  ||||||| ||| |||||||||| ||| | |||| ||||| ||| ||||||||||||||| ||| |||| |||||||||||||    
T  34364299 aaaaattgtggtcacgttcattttagttgtgtgaccacatgtttcagcttctaaata-tggccacgcaactgaaaaatatg-gtcacacagaccatatat 34364202  T
Q  101 ttggttaactgaaatttttcagagtggtacaaa 133  Q
    || ||||||| ||||||| ||||||||||||||    
T  34364201 ttagttaacttaaattttccagagtggtacaaa 34364169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 38244801 - 38244863
Alignment:
Q  56 atagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggttaactgaaattt 117  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| ||||||    
T  38244801 atagtggtcacgcaactgaaaaaatgtggtcacacagaccatatatttggctaacttaaattt 38244863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 38951976 - 38951840
Alignment:
Q  2 gaaaaatagtggtcatgcgcatttta-ttgcgtgaccacatttttt--aacttcaaaatagtggtcacgcaactgaaaaaa-tgtg---tcatacagacc 94  Q
    |||||||||||||||  ||||||||| ||||||||| | |||||||  |  ||| |||||||||||||||| ||||||||| ||||   |||||  ||||    
T  38951976 gaaaaatagtggtcagacgcattttagttgcgtgactatatttttttcagtttctaaatagtggtcacgcagctgaaaaaaatgtggtttcata--gacc 38951879  T
Q  95 atatatttggttaactgaaatttttcagagtggtacaaa 133  Q
    |||||||||||||||| |||||||  |||||||||||||    
T  38951878 atatatttggttaacttaaattttcgagagtggtacaaa 38951840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 2570005 - 2570101
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaa 149  Q
    |||||||||||||||||||| ||||||| | || | ||| |||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||    
T  2570005 aaaatagtggtcacgcaactcaaaaaatatggtaacacaaaccatatacttggttaacttaaattttccagagcggtacaaag-ggtgtacacattaa 2570101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 166
Target Start/End: Original strand, 38952005 - 38952118
Alignment:
Q  54 aaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaagg 152  Q
    |||||||||||| |||||| ||||||| || ||| | | |||||| |||| ||||||||||||||||||||||| ||||||| ||| || || |||| |     
T  38952005 aaatagtggtcaagcaactaaaaaaatatggtcacatataccatacattttgttaactgaaatttttcagagtgatacaaagaggtgtatactttaaggt 38952104  T
Q  153 tgtctacctatcat 166  Q
    |||||| |||||||    
T  38952105 tgtctatctatcat 38952118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 28499644 - 28499722
Alignment:
Q  74 aaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    |||||||||| |||| | ||||||||||||||||||||||||||||| ||| ||||||||| || | ||||| ||||||    
T  28499644 aaaaaatgtggtcatccggaccatatatttggttaactgaaattttttagaatggtacaaaatgatgtacacgttaaag 28499722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 42604288 - 42604114
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatac--------- 89  Q
    |||||||||||||||| |||||||||| |||  |||||| | |||| | |||| |||||||||| | |||||||||||||||| |||| ||             
T  42604288 ggaaaaatagtggtcacgcgcattttagttgtatgaccatacttttaagcttctaaatagtggtgatgcaactgaaaaaatgtggtcacacataccaatg 42604189  T
Q  90 agaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 164  Q
    | |||||| |||||||||| |||||||||| | | |||||||||  ||| |||||||||| | ||||||||||||    
T  42604188 ataccatacatttggttaattgaaattttttaaaatggtacaaatgggtgtacacattaaggttgtctacctatc 42604114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 2569975 - 2569891
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaa--tgt-gtcatacagaccatatatttggttaactgaaatttttcagagtggtacaaag 134  Q
    |||||||||||||||||| ||||||||  ||| |||| |||||||||||||||||||||| |||| |||| ||| | ||||||||    
T  2569975 aaaatagtggtcacgcaattgaaaaaaaatgtagtcacacagaccatatatttggttaaccgaaaatttttagaatagtacaaag 2569891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 9929735 - 9929662
Alignment:
Q  61 ggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaa 133  Q
    |||| ||||||| ||| |||||| ||||||| ||||||||||||||||||| |||||||  |||||||||||||    
T  9929735 ggtcgcgcaactaaaataatgtggtcatacaaaccatatatttggttaacttaaattttcaagagtggtacaaa 9929662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 25238613 - 25238653
Alignment:
Q  92 accatatatttggttaactgaaatttttcagagtggtacaa 132  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  25238613 accatatatttgattaactgaaatttttcagagtggtacaa 25238653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 29168549 - 29168620
Alignment:
Q  88 acagaccatatatttggttaactgaaatttttcaga-gtggtacaaagtggtatacacattaaaggtgtcta 158  Q
    ||||||||||||||||||||||||||||||| || | ||||||| || |  | |||||||||||||||||||    
T  29168549 acagaccatatatttggttaactgaaattttacaaaggtggtacgaaatattgtacacattaaaggtgtcta 29168620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 34941762 - 34941703
Alignment:
Q  107 aactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 166  Q
    |||||||||||||||||||||||||||| | | |||||||||| | ||||| ||||||||    
T  34941762 aactgaaatttttcagagtggtacaaagggatgtacacattaaggatgtcttcctatcat 34941703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 29167818 - 29167710
Alignment:
Q  57 tagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgt 155  Q
    ||||||||| |||||| |||||||||| ||| ||| ||||||||||| |||||||||||||||||| | ||||| || |   ||||||||| |||| |||    
T  29167818 tagtggtcaggcaact-aaaaaatgtggtcacacaaaccatatatttagttaactgaaatttttcaaaatggtataatg-aatatacacatcaaagatgt 29167721  T
Q  156 ctacctatcat 166  Q
    |||| ||||||    
T  29167720 ctacgtatcat 29167710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 166
Target Start/End: Original strand, 34364363 - 34364441
Alignment:
Q  88 acagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 166  Q
    ||||| |||||||||| |||||| |||||||||||||| |||||||| | | ||||| ||||| ||||| ||| |||||    
T  34364363 acagagcatatatttgattaacttaaatttttcagagtagtacaaagggatgtacacgttaaatgtgtcaaccaatcat 34364441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 17227548 - 17227498
Alignment:
Q  55 aatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttgg 104  Q
    ||||||||||||||| || ||||||||| |||| |||||||||||||||||    
T  17227548 aatagtggtcacgcaccttaaaaaatgtggtcacacagaccatatatttgg 17227498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 24708124 - 24708074
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatattt 102  Q
    ||||||||||||||||| || ||||||||| |||| |||||||||||||||    
T  24708124 aaaatagtggtcacgcaccttaaaaaatgtggtcacacagaccatatattt 24708074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 2996018 - 2995938
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaa 133  Q
    |||||||||  ||| |||||||||||||||| ||| ||| |||||||||||| |||| | || ||||||| |||||||||||    
T  2996018 aaaatagtgaccacacaactgaaaaaatgtggtcacaca-accatatatttgattaattaaattttttcaaagtggtacaaa 2995938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 248 - 409
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtgtc-atacagaccatat 98  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||||||||||||| |||| | | |||||||||||    
T  248 ggaaaaatagtggtcatgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgaaaaagtgtggccacacagaccatat 347  T
Q  99 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    |||||||||||||||| ||||||||||||||||||| | | |||| ||||| ||||| ||||    
T  348 atttggttaactgaaaattttcagagtggtacaaagagatgtacaaattaagggtgtttacc 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 217 - 106
Alignment:
Q  57 tagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttc-agagtggtacaaagtggtatacacattaaaggtg 154  Q
    |||||||||||||||| ||| |||||| ||| |||| |||||||||||||||||||||||||||| |||||||||||||    | |||||||||||| ||    
T  217 tagtggtcacgcaactaaaacaatgtgatcacacagtccatatatttggttaactgaaatttttcaagagtggtacaaaaaaatgtacacattaaagatg 118  T
Q  155 tctacctatcat 166  Q
    ||||||| ||||    
T  117 tctacctgtcat 106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 30906090 - 30906251
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatat 98  Q
    |||||||||||||||| |||||||||| |||||||||||||||||| | | |  |||||||||||||| ||||||||||  ||| |||  ||||||||||    
T  30906090 ggaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcatttaaatagtggtcacgaaactgaaaaatggtggtcacgcagaccatat 30906189  T
Q  99 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||| ||||    
T  30906190 atttggttaactgaaatttttcagagtggtacaaaagggtgtacacattaaaggtgtgtacc 30906251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 43900597 - 43900439
Alignment:
Q  2 gaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatata 99  Q
    ||||||||||||||| | |||||||| |||||||||||||||||| | |||| ||||||||||||| |||||||||||||||| ||| ||||||||||||    
T  43900597 gaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacacaactgaaaaaatgtgatcacacagaccatata 43900498  T
Q  100 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtcta 158  Q
    ||| |||| ||||||||||  ||||||||||||| || | ||||||||||| |||||||    
T  43900497 tttagttacctgaaattttcgagagtggtacaaaatgatctacacattaaaagtgtcta 43900439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 1400786 - 1400675
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    |||||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||  ||| |||||||||| |    
T  1400786 aaaatagtggtcacgcaacttaaaaaatgtggtcacacataccatatatttggttaactgaaatttttcagattggtacaaaagggtgtacacattaagg 1400687  T
Q  152 gtgtctacctat 163  Q
    ||||||||||||    
T  1400686 gtgtctacctat 1400675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 28527335 - 28527222
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    |||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||||||| ||| |||| ||||| |    
T  28527335 aaaatagtggtcacgcaactaaaaaaatgtggtcacacagaccatatatttggttagctgaaatttttcaaagtggtacaaaggggtgtaca-attaagg 28527237  T
Q  152 gtgtctacctatcat 166  Q
    |||||||||||||||    
T  28527236 gtgtctacctatcat 28527222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 45306036 - 45305881
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatat 98  Q
    |||||||||||||||| || ||||||| ||||||| |||||||||| | |||  |||| |||||||||||||||||||||| || |||||||||| ||||    
T  45306036 ggaaaaatagtggtcacgcacattttagttgcgtggccacatttttcagcttttaaat-gtggtcacgcaactgaaaaaatatggtcatacagactatat 45305938  T
Q  99 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgt 155  Q
    ||||| ||||||||||||||| ||||||||||||||  || |||| ||||| |||||    
T  45305937 atttgattaactgaaattttttagagtggtacaaaggagtgtacatattaagggtgt 45305881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 33667412 - 33667493
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtgt-catacagaccatatatttggttaactgaaatttttcagagtggtacaaa 133  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  33667412 aaaatagtggtcacgcaacttaaaaaatgtgttcatacataccatatatttggttaactaaaatttttcagagtggtacaaa 33667493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 41212411 - 41212507
Alignment:
Q  60 tggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtc 156  Q
    ||||||| ||||| |||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||    
T  41212411 tggtcacacaact-aaaaaatgtggtcacacagaccatatatttggttaacttaaatttttcagagtggtacaaaggggtatacatattaagggtgtc 41212507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 166
Target Start/End: Complemental strand, 30906060 - 30905949
Alignment:
Q  56 atagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtg 154  Q
    ||||||||||| ||||| || ||||||| ||| |||||| |||||| ||||||||| ||| |||||||| || ||||||| | | ||||||||||  |||    
T  30906060 atagtggtcacacaactaaataaatgtggtcacacagacaatatatctggttaactaaaaattttcagaatgttacaaagggatgtacacattaagagtg 30905961  T
Q  155 tctacctatcat 166  Q
    ||||||||||||    
T  30905960 tctacctatcat 30905949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 1400813 - 1400891
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaa 78  Q
    |||||||||||| ||| |||||||||  ||| |||||||||||||| | |||| |||||||||||||||||||||||||    
T  1400813 ggaaaaatagtgatcacgcgcatttttgttgtgtgaccacatttttcagcttctaaatagtggtcacgcaactgaaaaa 1400891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 7378508 - 7378640
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatat 98  Q
    |||| |||||||||||  | ||||||| |||||| |||| |||||| | |||| |||| ||||| |||||||||||||||| || ||| ||| |||||||    
T  7378508 ggaataatagtggtcacacacattttagttgcgtcaccatattttt-agcttctaaat-gtggttacgcaactgaaaaaatatggtcacacaaaccatat 7378605  T
Q  99 atttggttaactgaaatttttcagagtggtacaaa 133  Q
    |||| ||||||||||||||||| || |||| ||||    
T  7378606 attttgttaactgaaatttttctgaatggtgcaaa 7378640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 28527362 - 28527444
Alignment:
Q  1 ggaaaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg 83  Q
    ||||||||||||||||  ||||| ||| | |||||| |||||||  | |||| ||||  ||||||||||||| ||||||||||    
T  28527362 ggaaaaatagtggtcacacgcatgttagttcgtgacaacattttccagcttctaaattatggtcacgcaactaaaaaaatgtg 28527444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 33667324 - 33667279
Alignment:
Q  83 gtcatacagaccatatatttggttaactgaaatttttcagagtggt 128  Q
    |||||||| ||||||||||||||||| |||| ||||| ||||||||    
T  33667324 gtcatacaaaccatatatttggttaattgaatttttttagagtggt 33667279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33667385 - 33667328
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaat 57  Q
    |||||||||||||| | || ||||||| |||||||||||||||||| |||||| ||||    
T  33667385 ggaaaaatagtggttacgcacattttaattgcgtgaccacatttttcaacttctaaat 33667328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 34175146 - 34175049
Alignment:
Q  68 caactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 164  Q
    |||||||||||||||  ||| ||| | ||||||||| ||||| ||||| |||||||| |  ||||||| | | ||||||||||| ||||| |||||||    
T  34175146 caactgaaaaaatgtaatcacacaaatcatatatttagttaattgaaaattttcagaataatacaaagggatgtacacattaaaagtgtcaacctatc 34175049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 43900625 - 43900685
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactga 112  Q
    ||||||| |||||||||| | |||||||||| ||| ||| | |||||||||||||||||||    
T  43900625 aaaataggggtcacgcaattaaaaaaatgtgatcacacaaatcatatatttggttaactga 43900685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 22608428 - 22608281
Alignment:
Q  3 aaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatat 100  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||| | |||| ||||||||||||||||||||||||| ||| |||| |||||||||||||    
T  22608428 aaaaatagtggtcatgcacattttagttgcatgaccacatttttcagcttctaaatagtggtcacgcaactgaaaaa-tgtagtcacacagaccatatat 22608330  T
Q  101 ttggttaactgaaatttttcagagtggtacaaagtggtatacacattaa 149  Q
    |||||||||| |||||||| |||||||||||||| ||| ||||||||||    
T  22608329 ttggttaactaaaatttttgagagtggtacaaaggggtgtacacattaa 22608281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 33815055 - 33815174
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatat 98  Q
    |||||||| ||||||| |||||||||| |||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||| |||||| ||||    
T  33815055 ggaaaaatggtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgaaaaaatgtggtcacacagactatat 33815154  T
Q  99 atttggttaactgaaatttt 118  Q
    |||| ||||| |||| ||||    
T  33815155 atttagttaattgaagtttt 33815174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 3222501 - 3222343
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatat 98  Q
    |||||||||||||||| |  ||||||| |||||||||| ||||||| | | |  ||||||||||||||||||||||||||||| |||| | | |||||||    
T  3222501 ggaaaaatagtggtcacgtacattttagttgcgtgaccgcatttttcagcatttaaatagtggtcacgcaactgaaaaaatgtggtcacagacaccatat 3222402  T
Q  99 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtcta 158  Q
    |||||||||  |||||||||| |||||  ||||||| ||| |||||||||| ||||||||    
T  3222401 atttggttatttgaaatttttaagagtaatacaaag-ggtgtacacattaagggtgtcta 3222343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 2835059 - 2835173
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    ||||||||||| || ||||| |||||||||| ||| |||||   ||||||||||||||| |||||||||||||||||||||| || |||||||||||| |    
T  2835059 aaaatagtggttacacaactaaaaaaatgtggtcacacagatggtatatttggttaacttaaatttttcagagtggtacaaattgatatacacattaagg 2835158  T
Q  152 gtgtctacctatcat 166  Q
     ||||||||||||||    
T  2835159 ctgtctacctatcat 2835173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 9068502 - 9068599
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaa 149  Q
    |||||||||||||||||||| |||||||||| ||| ||| |||||||||||| |||||| ||||||||||||||||||||||  ||| ||||||||||    
T  9068502 aaaatagtggtcacgcaactaaaaaaatgtggtcacacataccatatatttgattaactaaaatttttcagagtggtacaaaagggtgtacacattaa 9068599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 30056139 - 30056027
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaa-tgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaa 150  Q
    |||||||||||||||||||  |||||| |||| ||| | |||||||||||||||||||||||||||||| ||||| |||||||| ||  || ||||||||    
T  30056139 aaaatagtggtcacgcaacaaaaaaaaatgtggtcacatagaccatatatttggttaactgaaattttttagagttgtacaaaggggagtatacattaaa 30056040  T
Q  151 ggtgtctacctat 163  Q
    |||||||||||||    
T  30056039 ggtgtctacctat 30056027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 157
Target Start/End: Complemental strand, 23595192 - 23595066
Alignment:
Q  32 gtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtac 130  Q
    |||||||||||||| | |||| ||||||| ||||| ||||| ||||||| || ||| ||||||||||||||| ||||||| |||||||  |||||| |||    
T  23595192 gtgaccacatttttcagcttctaaatagttgtcacacaactaaaaaaatatggtcacacagaccatatatttagttaacttaaattttcgagagtgatac 23595093  T
Q  131 aaagtggtatacacattaaaggtgtct 157  Q
    |||  ||| ||||||||||||||||||    
T  23595092 aaaagggtgtacacattaaaggtgtct 23595066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 10304741 - 10304858
Alignment:
Q  3 aaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatat 100  Q
    |||||||||||||| |||||||||| ||||||||||  ||||||   |||| |||||||| |||||||||||||||||||| |||| |||||||||||||    
T  10304741 aaaaatagtggtcacgcgcattttagttgcgtgaccgtatttttctgcttctaaatagtgatcacgcaactgaaaaaatgtggtcacacagaccatatat 10304840  T
Q  101 ttggttaactgaaatttt 118  Q
    || ||| ||| |||||||    
T  10304841 ttagttcactaaaatttt 10304858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 3 - 166
Target Start/End: Complemental strand, 9474697 - 9474537
Alignment:
Q  3 aaaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaat---gtgtcatacagaccatata 99  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||| |||| |       |||||||||||||||||||   |||||||| ||| ||||||    
T  9474697 aaaaatagtggtcacacgcattttatttcgtgaccacattttttagcttcta-------gtcacgcaactgaaaaaatgtggtgtcatatagatcatata 9474605  T
Q  100 tttggttaactgaaatttttc-agagtggtacaaagtggtatacacattaaaggtgtctacctatcat 166  Q
     || | ||||||||||||||| |||||||||||||  | | || |||||||  |||||||||||||||    
T  9474604 gttagctaactgaaatttttcaagagtggtacaaaaggatgtatacattaagagtgtctacctatcat 9474537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 2430619 - 2430507
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtgtcatacagaccatatatttggttaactgaaat-ttttcagagtggtacaaagtggtatacacattaaag 151  Q
    ||||||||||||| |||||| ||||||   |||| ||||| ||||||||| |||||||||||| |||||||| ||||||||||   | |||||||||| |    
T  2430619 aaaatagtggtcatgcaactaaaaaaaatggtcacacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagg 2430520  T
Q  152 gtgtctacctatc 164  Q
    |||||||||||||    
T  2430519 gtgtctacctatc 2430507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 24386312 - 24386420
Alignment:
Q  57 tagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgt 155  Q
    ||||| |||||||||  |||| ||||| ||| ||||||||||||||||||||||| ||||||||||| |||||| |||| | | |||||||||| |||||    
T  24386312 tagtgatcacgcaacaaaaaatatgtggtcacacagaccatatatttggttaacttaaatttttcagcgtggtataaagggatgtacacattaagggtgt 24386411  T
Q  156 ctacctatc 164  Q
    | |||||||    
T  24386412 caacctatc 24386420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 10304712 - 10304631
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaag 134  Q
    |||| ||||||||||||| | ||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  10304712 aaaaaagtggtcacgcaatt-aaaaagtgtggtcacacagaccatatatttggttaactgaaattttttagagtggtacaaag 10304631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 7706877 - 7706773
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaa-tgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaa 150  Q
    ||||||||||||||||||||||||||| |||| ||| ||| ||||||||||   |||||| |||||||||||| |||||||||  | | |||||||||||    
T  7706877 aaaatagtggtcacgcaactgaaaaaaatgtggtcacacaaaccatatattatattaactaaaatttttcagaatggtacaaaaggatgtacacattaaa 7706778  T
Q  151 ggtgt 155  Q
    |||||    
T  7706777 ggtgt 7706773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 7915696 - 7915767
Alignment:
Q  59 gtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggta 129  Q
    |||||||||||||| ||||| |||| ||| |||||| ||||||||| |||||||||||||||||||||||||    
T  7915696 gtggtcacgcaactaaaaaattgtggtcacacagacgatatatttgattaactgaaatttttcagagtggta 7915767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 138727 - 138645
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtgtc-atacagaccatatatttggttaactgaaatttttcagagtggtacaaag 134  Q
    |||||||||||||||||||| | |||||||| | | ||||||||||||||||||||||| || ||||| ||||||||| ||||    
T  138727 aaaatagtggtcacgcaactaagaaaatgtggccacacagaccatatatttggttaactaaatttttttagagtggtataaag 138645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 146748 - 146666
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtgtc-atacagaccatatatttggttaactgaaatttttcagagtggtacaaag 134  Q
    |||||||||||||||||||| | |||||||| | | ||||||||||||||||||||||| || ||||| ||||||||| ||||    
T  146748 aaaatagtggtcacgcaactaagaaaatgtggccacacagaccatatatttggttaactaaatttttttagagtggtataaag 146666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 159
Target Start/End: Original strand, 11108173 - 11108275
Alignment:
Q  58 agtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtc 156  Q
    ||||||||||||||||||||||||| |||| ||| | ||||||||||||||| |||| ||||| ||| |  ||||||  | |||||||||||| ||||||    
T  11108173 agtggtcacgcaactgaaaaaatgtggtcacacaaatcatatatttggttaattgaatttttttagaataatacaaaaagatatacacattaagggtgtc 11108272  T
Q  157 tac 159  Q
    |||    
T  11108273 tac 11108275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 2430649 - 2430706
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggttaac 109  Q
    |||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  2430649 aaaatagtggtcacgcaactgaaaaaatgtggtcacacaaaccatatatttggttaac 2430706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 20084689 - 20084581
Alignment:
Q  57 tagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgt 155  Q
    ||||| |||||||||  |||| ||||| ||| ||| ||||||||||||||||||| |||||||||||  ||||| |||| | | |||||||||| |||||    
T  20084689 tagtgatcacgcaacataaaatatgtggtcacacataccatatatttggttaacttaaatttttcagcatggtataaagggatgtacacattaagggtgt 20084590  T
Q  156 ctacctatc 164  Q
    | |||||||    
T  20084589 caacctatc 20084581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 138826 - 138892
Alignment:
Q  94 catatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    |||||||||||||||||||| ||||| ||||| |||||||| ||| ||||||| || ||||||||||    
T  138826 catatatttggttaactgaatttttttagagtagtacaaaggggtgtacacatcaatggtgtctacc 138892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 146847 - 146913
Alignment:
Q  94 catatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    |||||||||||||||||||| ||||| ||||| |||||||| ||| ||||||| || ||||||||||    
T  146847 catatatttggttaactgaatttttttagagtagtacaaaggggtgtacacatcaatggtgtctacc 146913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 11108160 - 11108102
Alignment:
Q  75 aaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaa 132  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||||||||||| ||||||    
T  11108160 aaaaatgtggtcacacagaccatatatttggttaattgaaatttttcagagtagtacaa 11108102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 7915675 - 7915606
Alignment:
Q  92 accatatatttggttaactgaaattttt-cagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    |||| ||||||| ||||||||||||||| ||||||| ||||||  ||| |||||||||||||||||||||    
T  7915675 accacatatttgattaactgaaattttttcagagtgatacaaaagggtgtacacattaaaggtgtctacc 7915606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 22608461 - 22608571
Alignment:
Q  57 tagtggtcacgcaactgaaaaaatgtg-tcatacagaccatata---tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaagg 152  Q
    |||||||||||||||| ||| ||| || ||| ||||| ||||||   ||||||||||||||| |||||| | || ||||||| ||| |||| |||||| |    
T  22608461 tagtggtcacgcaactaaaacaatatggtcacacagatcatataatatttggttaactgaaaattttcaaaatgatacaaaggggtgtacatattaaaag 22608560  T
Q  153 tgtctacctat 163  Q
    |||||||||||    
T  22608561 tgtctacctat 22608571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 2365649 - 2365704
Alignment:
Q  60 tggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggttaactgaaa 114  Q
    ||||||||||||||||||||||| ||||  || |||||||||||||||||||||||    
T  2365649 tggtcacgcaactgaaaaaatgtggtcacgcataccatatatttggttaactgaaa 2365704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 9068409 - 9068328
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaag 134  Q
    ||||||||  ||| |||||||||||| |||| |||||||||||||||| |||||||||||| |||||  ||||||||| ||||    
T  9068409 aaaatagtattcatgcaactgaaaaa-tgtggtcatacagaccatatacttggttaactgatattttcgagagtggtataaag 9068328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 13767189 - 13767125
Alignment:
Q  83 gtcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacatt 147  Q
    |||| ||||||||||||||||||||||| |||||||  |||||| |||||||  || ||||||||    
T  13767189 gtcagacagaccatatatttggttaacttaaattttctagagtgatacaaaggagtgtacacatt 13767125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 18980411 - 18980487
Alignment:
Q  90 agaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 166  Q
    ||||||||||||| ||||||| | ||||| ||||||||||||||  ||| | ||||||||  ||||| |||||||||    
T  18980411 agaccatatatttagttaacttagattttgcagagtggtacaaaaaggtgtgcacattaagagtgtcaacctatcat 18980487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 15341434 - 15341485
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttg 103  Q
    ||||||||||||||||| || |||||||||| ||| ||||||||||||||||    
T  15341434 aaaatagtggtcacgcatcttaaaaaatgtgttcacacagaccatatatttg 15341485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 138754 - 138820
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcac 66  Q
    |||||||||||||||  || || |||| |||||||||||||||||| | |||| |||||||||||||    
T  138754 ggaaaaatagtggtcgcgcacaatttagttgcgtgaccacatttttcagcttctaaatagtggtcac 138820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 146775 - 146841
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcac 66  Q
    |||||||||||||||  || || |||| |||||||||||||||||| | |||| |||||||||||||    
T  146775 ggaaaaatagtggtcgcgcacaatttagttgcgtgaccacatttttcagcttctaaatagtggtcac 146841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 3222532 - 3222610
Alignment:
Q  56 atagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaa 133  Q
    |||||||||||| ||||  ||||||||| ||| |||||||||||||||| |||||| |  ||||| |||||| ||||||    
T  3222532 atagtggtcacgtaactagaaaaatgtggtcacacagaccatatatttgattaactaatcttttttagagtgatacaaa 3222610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 23595259 - 23595345
Alignment:
Q  74 aaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctac 159  Q
    |||||||||| ||| |||||| |||||||||||||| |||||||||| |||||  ||||||  ||| |||| ||||| | |||||||    
T  23595259 aaaaaatgtggtcacacagactatatatttggttaattgaaattttttagagtaatacaaaagggtgtacatattaaggttgtctac 23595345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 7706935 - 7706996
Alignment:
Q  59 gtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggttaactgaaattttt 119  Q
    |||||| ||||||| ||||||||| || | |||||| |||||||| ||||||||||||||||    
T  7706935 gtggtctcgcaactaaaaaaatgtagttacacagactatatatttagttaactgaaattttt 7706996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 15341645 - 15341697
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttgg 104  Q
    ||||||||||||||||  || |||||||||| ||| |||||||||||||||||    
T  15341645 aaaatagtggtcacgcgccttaaaaaatgtgatcacacagaccatatatttgg 15341697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 15341857 - 15341909
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttgg 104  Q
    |||||||||||||| || || ||||||||| |||| |||||||||||||||||    
T  15341857 aaaatagtggtcacacaccttaaaaaatgtggtcacacagaccatatatttgg 15341909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 19846355 - 19846303
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttgg 104  Q
    ||||||||||||||||| || ||||||||| |||| ||||| |||||||||||    
T  19846355 aaaatagtggtcacgcaccttaaaaaatgtggtcagacagatcatatatttgg 19846303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 20084739 - 20084815
Alignment:
Q  90 agaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 166  Q
    ||||||||||||| ||||||| | ||||| |||| |||||||||   || ||||||||||  ||||| |||||||||    
T  20084739 agaccatatatttagttaacttagattttgcagaatggtacaaaaaagtctacacattaagagtgtcaacctatcat 20084815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 17633382 - 17633545
Alignment:
Q  3 aaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaa-cttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatata 99  Q
    |||||||||||||| |||||||||| ||||||||||| |||||| || |||| | || ||||||||||||||||||||||||| ||| ||||||||||||    
T  17633382 aaaaatagtggtcacgcgcattttagttgcgtgaccatatttttcaaacttctagat-gtggtcacgcaactgaaaaaatgtggtcacacagaccatata 17633480  T
Q  100 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 164  Q
    |||||||||||||||||||||| |||||||||||| ||| |||| ||||| ||| || |||||||    
T  17633481 tttggttaactgaaatttttcaaagtggtacaaaggggtgtacatattaagggtatcaacctatc 17633545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 9809144 - 9808979
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatat 98  Q
    |||||||||||||||| |||||||| | ||||||||| |||||||| | |||| ||||||||||||||||||||||||||||| ||||  ||||||||||    
T  9809144 ggaaaaatagtggtcacgcgcatttgagttgcgtgactacatttttcagcttctaaatagtggtcacgcaactgaaaaaatgtggtcacgcagaccatat 9809045  T
Q  99 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 164  Q
    |||| |||||||||| ||||||| || ||||||||  ||| |||| ||||| |||||| |||||||    
T  9809044 atttagttaactgaattttttcatagcggtacaaaagggtgtacatattaagggtgtcaacctatc 9808979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 16583666 - 16583505
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatat 98  Q
    |||||||||||||||| |||||||||| |||| ||| || |||||| | |||| |||||||||||||||||||||||||||||| ||| |   |||||||    
T  16583666 ggaaaaatagtggtcacgcgcattttagttgcatgatcatatttttcagcttctaaatagtggtcacgcaactgaaaaaatgtggtcacatcaaccatat 16583567  T
Q  99 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    ||||||||||||||||||||  |||||||||||||| | | ||| |||||| ||||||||||    
T  16583566 atttggttaactgaaattttcgagagtggtacaaagggatgtacgcattaagggtgtctacc 16583505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 9810830 - 9810665
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatat 98  Q
    |||||||||| ||||| || ||||| | ||||||||| |||||||||| |||| ||||||||||||||||||||||||||||| || |  || |||||||    
T  9810830 ggaaaaatagaggtcacgcacatttgagttgcgtgactacattttttagcttctaaatagtggtcacgcaactgaaaaaatgtggtaacgcaaaccatat 9810731  T
Q  99 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 164  Q
    ||||  ||||||||||||||||| |||||||||||  ||| |||| ||||| |||||| |||||||    
T  9810730 atttaattaactgaaatttttcatagtggtacaaaagggtgtacatattaagggtgtcaacctatc 9810665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 24669271 - 24669363
Alignment:
Q  54 aaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacaca 145  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||||    
T  24669271 aaatagtggtcacgcaactgaaaaaatgtggtcacacagaccatatatttgattaacttaaatttttcagagtggtacaaaggggtgtacaca 24669363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 19596848 - 19596691
Alignment:
Q  5 aaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaa--tgtg-tcatacagaccatatat 100  Q
    ||||||| ||||||||||||||| |||||||||||||||||| | |||| ||||| |||| || || |||||||||  |||| |||  | ||||||||||    
T  19596848 aaatagtagtcatgcgcattttagttgcgtgaccacatttttcagcttctaaataatggttacacagctgaaaaaaaatgtggtcacgctgaccatatat 19596749  T
Q  101 ttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtcta 158  Q
    ||||| ||| || ||||||||||||||||||||| ||| |||||||||||| ||||||    
T  19596748 ttggtcaacagagatttttcagagtggtacaaaggggtgtacacattaaagatgtcta 19596691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 1966841 - 1966733
Alignment:
Q  57 tagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgt 155  Q
    |||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||  ||| || ||| ||| |||||    
T  1966841 tagtggtcacgcaact-aaaaaatgtggtcacacagaccatatatttggttaactgaaa-ttttcagagtggtacaaaagggtgtatacagtaagggtgt 1966744  T
Q  156 ctacctatcat 166  Q
    |||||||||||    
T  1966743 ctacctatcat 1966733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 8740831 - 8740964
Alignment:
Q  2 gaaaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactg-aaaaaatgt-gtcatacagaccatata 99  Q
    ||||||||||||||| |||||||||| | ||||||||||||||| | |||| |||||||| ||||||||||| ||||||| | |||| ||||| |||| |    
T  8740831 gaaaaatagtggtcacgcgcattttagtacgtgaccacatttttcagcttctaaatagtgatcacgcaactgaaaaaaatatggtcacacagatcataca 8740930  T
Q  100 tttggttaactgaaatttttcagagtggtacaaa 133  Q
    |||| |||||||||| |||| |||||| ||||||    
T  8740931 tttgattaactgaaaattttgagagtgatacaaa 8740964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 51 - 166
Target Start/End: Original strand, 14351157 - 14351273
Alignment:
Q  51 tcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaa 149  Q
    ||||||||||||||||||||||  |||||| || ||| ||| ||||||||||||||||||| || ||||| ||||||||||||||  ||  |||||||||    
T  14351157 tcaaaatagtggtcacgcaactagaaaaatatggtcacacaaaccatatatttggttaactaaattttttgagagtggtacaaagaagtgcacacattaa 14351256  T
Q  150 aggtgtctacctatcat 166  Q
     ||||||||||||||||    
T  14351257 gggtgtctacctatcat 14351273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 35544459 - 35544578
Alignment:
Q  1 ggaaaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatata 99  Q
    |||||||||||| |||  |||||||  |||||||||||||||||| | |||| ||||||||||||  |||| ||||||||||| ||| ||| ||||||||    
T  35544459 ggaaaaatagtgatcacacgcatttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaacggaaaaaatgtgatcacacataccatata 35544558  T
Q  100 tttggttaactgaaattttt 119  Q
    |||| |||||||||||||||    
T  35544559 tttgattaactgaaattttt 35544578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 55666865 - 55667023
Alignment:
Q  1 ggaaaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatata 99  Q
    |||||||||||||||| |  ||||||| | ||||||||| ||||| | |||  ||||| |||||||||||||| |||||||| |||| ||||||||||||    
T  55666865 ggaaaaatagtggtcacgaacattttagttcgtgaccacgtttttcagcttataaataatggtcacgcaactg-aaaaatgtggtcacacagaccatata 55666963  T
Q  100 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctac 159  Q
    ||| |||||||||||||||  | ||||||||||||  || |||| ||||| |||| ||||    
T  55666964 tttagttaactgaaattttcgaaagtggtacaaaggagtgtacatattaagggtggctac 55667023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 74 - 164
Target Start/End: Complemental strand, 17633333 - 17633242
Alignment:
Q  74 aaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 164  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||||||   || ||||||||||||||||| |||||||    
T  17633333 aaaaaatgtggtcacacagaccatatatttggttaactaaaatttttcggagtggtacaaatgagtgtacacattaaaggtgtcaacctatc 17633242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 1966872 - 1966950
Alignment:
Q  1 ggaaaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaa 79  Q
    |||||||||||||||| ||||||||  |||||||||||||||||| | |||| ||||||||||||||||||| ||||||    
T  1966872 ggaaaaatagtggtcacgcgcatttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactaaaaaaa 1966950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 2433779 - 2433654
Alignment:
Q  3 aaaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtgtcatacagaccatatattt 102  Q
    |||||||||||||| | ||||||| || | ||||||||||||| | |||| ||||||||||||  ||||||||||||||||  || || | |||||||||    
T  2433779 aaaaatagtggtcacgtgcattttttttcatgaccacatttttcagcttctaaatagtggtcaaacaactgaaaaaatgtg--at-cacatcatatattt 2433683  T
Q  103 ggttaactgaaatttttcagagtggtaca 131  Q
    | |||| |||||||||||| |||||||||    
T  2433682 gattaattgaaatttttcaaagtggtaca 2433654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 33249655 - 33249732
Alignment:
Q  1 ggaaaaatagtggtcatgcgcattttat-tgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaa 77  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||| | |||| ||||||||||||||||||||||||    
T  33249655 ggaaaaatagtggtcacacgcattttatgtgcgtgaccacatttttcaccttctaaatagtggtcacgcaactgaaaa 33249732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 42908665 - 42908745
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaa 133  Q
    ||||||||||| || ||||| |||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||||    
T  42908665 aaaatagtggtgactcaact-aaaaaatgtggtcacacataccatatatttggttaacttaaatttttcagagtggtacaaa 42908745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 14351132 - 14350999
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatat 98  Q
    ||||||||||||||||||  ||||||| |||||||| ||||| ||||| ||||||||||||||| | |||| ||  ||||||||  |||||| |   |||    
T  14351132 ggaaaaatagtggtcatggacattttagttgcgtgatcacatcttttagcttcaaaatagtggttatgcaattg--aaaatgtgaccatacaaattgtat 14351035  T
Q  99 atttggttaactgaaatttttcagagtggtacaaag 134  Q
    ||||||||||||||||||||  |||||||| |||||    
T  14351034 atttggttaactgaaattttcgagagtggtgcaaag 14350999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 42908638 - 42908520
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacatttttt-aacttcaaaatagtggtcacgcaactgaaaaa-atgtgtcatacagaccata 97  Q
    ||||| |||||||||| |||||||||| |||||||| |||||||||| |||||  |||| |||||||| ||||||||||| ||| |||| ||||||||||    
T  42908638 ggaaacatagtggtcacgcgcattttagttgcgtgatcacattttttcaacttttaaat-gtggtcacacaactgaaaaatatg-gtcaaacagaccata 42908541  T
Q  98 tatttggttaactgaaatttt 118  Q
    ||||||||| ||| |||||||    
T  42908540 tatttggttcactaaaatttt 42908520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 33179798 - 33179965
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatat 98  Q
    ||||||||||||||||  ||||||||| ||| ||| |||||||||| |  ||| |||||||||||||||| ||||||| || || | | ||| |||||||    
T  33179798 ggaaaaatagtggtcacacgcattttagttgtgtggccacatttttcactttctaaatagtggtcacgcagctgaaaagatatggtaacacataccatat 33179897  T
Q  99 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 166  Q
    |||| ||||| | |||||||  | ||||||| ||||   |||||||||||| | |||||||| |||||    
T  33179898 atttagttaattaaaattttcgatagtggtataaagaaatatacacattaaggatgtctaccaatcat 33179965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 9810866 - 9810957
Alignment:
Q  60 tggtcacgcaactgaaaaaa-tgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaa 149  Q
    ||||||||||||| |||||| |||| ||| ||||||||||||||||||||||| ||| |||  |||||||||||||  ||| ||||||||||    
T  9810866 tggtcacgcaactaaaaaaaatgtggtcacacagaccatatatttggttaacttaaaatttctagagtggtacaaataggtttacacattaa 9810957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 166
Target Start/End: Original strand, 19596882 - 19596994
Alignment:
Q  56 atagtggtcacgcaactgaaaaaa-tgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggt 153  Q
    |||||||||||||| || |||||| |||| ||| ||  ||||||||||||||||||||||||||| || |  ||||||||  | | |||||||||| ||     
T  19596882 atagtggtcacgcagctaaaaaaaatgtggtcacacgtaccatatatttggttaactgaaattttccaaaagggtacaaaaggatgtacacattaagggc 19596981  T
Q  154 gtctacctatcat 166  Q
    |||||||||||||    
T  19596982 gtctacctatcat 19596994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 19746945 - 19747021
Alignment:
Q  83 gtcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctac 159  Q
    |||| ||||||||| ||||| |||||||||||||||  ||| || ||||||| ||| ||||||||||| ||||||||    
T  19746945 gtcaaacagaccatgtatttagttaactgaaattttcgagaatgatacaaaggggtgtacacattaaaagtgtctac 19747021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 19792861 - 19792785
Alignment:
Q  83 gtcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctac 159  Q
    |||| ||||||||| ||||| |||||||||||||||  ||| || ||||||| ||| ||||||||||| ||||||||    
T  19792861 gtcaaacagaccatgtatttagttaactgaaattttcgagaatgatacaaaggggtgtacacattaaaagtgtctac 19792785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 24669190 - 24669123
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccat-atatttggttaactgaaatttt 118  Q
    |||||||||||||||||||||||||||||| |||| ||| ||||| |||||||| ||||| |||||||    
T  24669190 aaaatagtggtcacgcaactgaaaaaatgtggtcacacataccataatatttggctaacttaaatttt 24669123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 25007632 - 25007701
Alignment:
Q  90 agaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    |||||||||||||||||||||||||||||  ||| |||||||||| ||| || |||||||  |||||||||    
T  25007632 agaccatatatttggttaactgaaattttcgagaatggtacaaag-ggtgtatacattaagagtgtctacc 25007701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 8740796 - 8740692
Alignment:
Q  57 tagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgt 155  Q
    |||||||||| ||||| |||||||||| ||| | | |||||||||||| ||||||  |||||||||||||||| ||||| |||    ||||| |||||||    
T  8740796 tagtggtcac-caactaaaaaaatgtggtcacataaaccatatatttgattaacttgaatttttcagagtggtgcaaaggggt----acatt-aaggtgt 8740703  T
Q  156 ctacctatcat 166  Q
    |||||||||||    
T  8740702 ctacctatcat 8740692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 9809178 - 9809270
Alignment:
Q  60 tggtcacgcaactgaaaaaa--tgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaa 149  Q
    ||||||||||||| ||||||  |||| ||| |||||||||||| |||||||||| ||| |||  |||||||||||||  ||| ||||||||||    
T  9809178 tggtcacgcaactaaaaaaaaatgtggtcacacagaccatatacttggttaacttaaaatttctagagtggtacaaataggtttacacattaa 9809270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 8740669 - 8740600
Alignment:
Q  92 accatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 166  Q
    |||||||||||| ||||||  |||||||||||||||| ||||| |||    ||||| ||||||||||||||||||    
T  8740669 accatatatttgattaacttgaatttttcagagtggtgcaaaggggt----acatt-aaggtgtctacctatcat 8740600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 15523185 - 15523144
Alignment:
Q  125 tggtacaaagtggtatacacattaaaggtgtctacctatcat 166  Q
    ||||||||||  || |||||||||||||||||||||||||||    
T  15523185 tggtacaaaggagtgtacacattaaaggtgtctacctatcat 15523144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 20874875 - 20874823
Alignment:
Q  28 ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaat 80  Q
    |||||| ||||||||||| | |||| ||| |||| ||||||||||||||||||    
T  20874875 ttgcgttaccacatttttcagcttctaaaaagtgatcacgcaactgaaaaaat 20874823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 31303523 - 31303362
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatat 98  Q
    |||||||||||||||| || ||||||| |||| ||||||||||||| | |||| ||||||||||||||||| |||||||||||| |||  |||||||| |    
T  31303523 ggaaaaatagtggtcacgcacattttagttgcatgaccacatttttcagcttctaaatagtggtcacgcaattgaaaaaatgtggtcacgcagaccatgt 31303424  T
Q  99 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    |||||||| ||||||||||||||||||| ||||||  | | |||||||||| ||||||||||    
T  31303423 atttggttgactgaaatttttcagagtgatacaaatggatgtacacattaagggtgtctacc 31303362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 20556836 - 20556675
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatat 98  Q
    ||||||||| |||||| ||| |||||| |||||||||||||||||| | |||| ||||||||||||| ||||||||||||| || ||| || ||||||||    
T  20556836 ggaaaaatattggtcacgcgtattttagttgcgtgaccacatttttcagcttctaaatagtggtcacacaactgaaaaaatatggtcacaccgaccatat 20556737  T
Q  99 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    ||||||||||||||||||||  |||||   |||||| | |||||||||||| ||||||||||    
T  20556736 atttggttaactgaaattttcgagagtaacacaaagagatatacacattaagggtgtctacc 20556675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 53 - 160
Target Start/End: Original strand, 28805115 - 28805223
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    ||||| ||| ||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| |    
T  28805115 aaaatcgtgatcacgcaactgaaaaaatgtggtcacacataccatatatttggttaacttaaatttttcagagtgatacaaaggggtatacacattaagg 28805214  T
Q  152 gtgtctacc 160  Q
    |||||||||    
T  28805215 gtgtctacc 28805223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 18312896 - 18312736
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatat 98  Q
    ||||||||||||||||   |||||||| |||||||| ||||||||  | |||| ||||||| || ||||||||||||| ||||| ||| | |||||||||    
T  18312896 ggaaaaatagtggtcacatgcattttagttgcgtgagcacattttc-agcttctaaatagtagtgacgcaactgaaaatatgtggtcacagagaccatat 18312798  T
Q  99 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    ||||| |||| |||||||||  |||||||||||||| ||||||||| |||| ||||||||||    
T  18312797 atttgattaattgaaattttcgagagtggtacaaaggggtatacacgttaagggtgtctacc 18312736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 4290896 - 4290736
Alignment:
Q  1 ggaaaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatata 99  Q
    |||||||||||||||| || || ||  |||||||||||||||||| |||||| ||||||||||||| ||||||||||||||| |||| | | ||||||||    
T  4290896 ggaaaaatagtggtcacgcacacttagttgcgtgaccacatttttcaacttctaaatagtggtcactcaactgaaaaaatgtggtcagataaaccatata 4290797  T
Q  100 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    | | ||||| | || || || |||||||||||||  ||| | |||||||||||||| ||||    
T  4290796 tctagttaattaaatttgtttagagtggtacaaacaggtgtgcacattaaaggtgtttacc 4290736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 5083832 - 5083984
Alignment:
Q  2 gaaaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatat 100  Q
    |||||||||||||||  |||||||  ||||||||||| |||||| |||||| ||||||||||||||||| ||||||||||| |||| ||| |||||||||    
T  5083832 gaaaaatagtggtcacccgcatttagttgcgtgaccatatttttcaacttctaaatagtggtcacgcaattgaaaaaatgtggtcacacataccatatat 5083931  T
Q  101 ttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggt 153  Q
    ||| | || |||||||||  ||| |  ||||||| ||| || |||||||||||    
T  5083932 ttgatgaattgaaattttcgagaataatacaaaggggtgtatacattaaaggt 5083984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 57 - 166
Target Start/End: Original strand, 4290927 - 4291037
Alignment:
Q  57 tagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgt 155  Q
    |||||||||||||||| |||||| ||| ||||||||| ||| |||||||||||||||||||||||| ||| |||||||| | |  ||||||||||||| |    
T  4290927 tagtggtcacgcaactaaaaaaacgtggtcatacagatcatttatttggttaactgaaatttttcaaagtagtacaaagagattgacacattaaaggtat 4291026  T
Q  156 ctacctatcat 166  Q
    |||||||||||    
T  4291027 ctacctatcat 4291037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 22033157 - 22033239
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaag 134  Q
    |||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  22033157 aaaatagtggtcacgcaactcaaaaaatatggtcacacagaccatatatttggttaactaaaatttttcagaatggtacaaag 22033239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 15958358 - 15958485
Alignment:
Q  3 aaaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatt 101  Q
    |||||| ||| ||| || ||||| ||||||||||||||||||| | |||| |||||||| ||| |||||| ||||| |||| ||| ||||||||||||||    
T  15958358 aaaaattgtgatcacgcacatttaattgcgtgaccacatttttcagcttctaaatagtg-tcatgcaacttaaaaa-tgtggtcacacagaccatatatt 15958455  T
Q  102 tggttaactgaaatttttcagagtggtaca 131  Q
    | ||||||||||||||| ||||||||||||    
T  15958456 tagttaactgaaattttacagagtggtaca 15958485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 166
Target Start/End: Original strand, 32964849 - 32964962
Alignment:
Q  54 aaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaagg 152  Q
    ||||||||||||||||||| |||| ||||| ||| ||||||||||||| | ||||||| |||||||| |||||| ||||||  ||| || ||||||||||    
T  32964849 aaatagtggtcacgcaactaaaaatatgtggtcacacagaccatatatatagttaacttaaattttttagagtgatacaaaagggtgtatacattaaagg 32964948  T
Q  153 tgtctacctatcat 166  Q
    ||||||| ||||||    
T  32964949 tgtctacatatcat 32964962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 21589720 - 21589823
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    ||||||||||||| |||||| |||||||||| ||| ||||||||||||||||| |||||||||||||| ||||||||| |||  | | |||||||||| |    
T  21589720 aaaatagtggtcatgcaactaaaaaaatgtggtcacacagaccatatatttggataactgaaattttttagagtggtataaacggatgtacacattaagg 21589819  T
Q  152 gtgt 155  Q
    ||||    
T  21589820 gtgt 21589823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 5083804 - 5083691
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    ||||||||||||||| |||| |||||||||| ||| | |||||||||||||| ||||||||||||||||| |||| || |||| |||||| | ||||| |    
T  5083804 aaaatagtggtcacgtaact-aaaaaatgtggtcacaaagaccatatatttgattaactgaaatttttcaaagtgatataaaggggtatatagattaagg 5083706  T
Q  152 gtgtctacctatcat 166  Q
     ||||||||||||||    
T  5083705 atgtctacctatcat 5083691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 18312923 - 18313005
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggttaactgaaatttttcagagtggtacaaag 134  Q
    |||||||||||||||||||| ||||||| | | || ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  18312923 aaaatagtggtcacgcaactaaaaaaatttagccacacaaaccatatatttggttagctgaaatttttcagagtggtacaaag 18313005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 21548494 - 21548362
Alignment:
Q  28 ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtg 126  Q
    |||||||||||||||||| | |||  ||||| ||||||| ||||||||||||| || ||| ||| ||||||| |||| ||||||||||||||  ||||||    
T  21548494 ttgcgtgaccacatttttcagcttttaaatattggtcacacaactgaaaaaatatggtcacacataccatat-tttgattaactgaaattttcaagagtg 21548396  T
Q  127 gtacaaagtggtatacacattaaaggtgtctacc 160  Q
    ||||||||  || || | ||||||||||||||||    
T  21548395 gtacaaagaagtgtatatattaaaggtgtctacc 21548362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 166
Target Start/End: Original strand, 31303553 - 31303663
Alignment:
Q  56 atagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtg 154  Q
    ||||||||||||||||| |||||||||| ||| ||| ||||||||||| ||||||||||||||||  |||||||| |||  | | || ||||||||||||    
T  31303553 atagtggtcacgcaact-aaaaaatgtggtcacacataccatatattttgttaactgaaatttttttgagtggtataaaaggatgtagacattaaaggtg 31303651  T
Q  155 tctacctatcat 166  Q
    |||||| |||||    
T  31303652 tctaccaatcat 31303663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 21548549 - 21548662
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    |||||||||||||||||||| || |||| || ||| ||||||||||||||| |||||||||||||||| ||| |||||| |||   |||||||||||| |    
T  21548549 aaaatagtggtcacgcaactaaacaaatatgatcacacagaccatatatttagttaactgaaattttttagaatggtac-aaggaatatacacattaagg 21548647  T
Q  152 gtgtctacctatcat 166  Q
     ||||||| ||||||    
T  21548648 atgtctacttatcat 21548662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 28804978 - 28804885
Alignment:
Q  74 aaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 166  Q
    |||||||||| ||| | |||||||||||||||||||||||||||||  ||| |||||||||  ||| |||| ||||| ||||||||||||||||    
T  28804978 aaaaaatgtggtcacatagaccatatatttggttaactgaaattttctagaatggtacaaaagggtgtacatattaagggtgtctacctatcat 28804885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 21589693 - 21589574
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatat 98  Q
    ||||||||||||||||  ||||||||| |||| ||||||||||||| | |||| |||||||| |||| ||||||||||||| | |||| | |||| ||||    
T  21589693 ggaaaaatagtggtcacacgcattttagttgcatgaccacatttttcagcttctaaatagtgatcacacaactgaaaaaatatggtcacatagacaatat 21589594  T
Q  99 atttggttaactgaaatttt 118  Q
    ||||| || ||| |||||||    
T  21589593 atttgattgactaaaatttt 21589574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 15958325 - 15958251
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtg 126  Q
    |||||||||||||| ||||| |||||||||| ||| || |||||||||||||||||||| |||||||||| ||||    
T  15958325 aaaatagtggtcacacaactaaaaaaatgtggtcacactgaccatatatttggttaacttaaatttttcaaagtg 15958251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 20556866 - 20556948
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaag 134  Q
    |||||||||||||| ||||  |||||||||| ||| |||||| |||||||| ||||||||||| |||||| |||| |||||||    
T  20556866 aaaatagtggtcactcaaccaaaaaaatgtggtcaaacagactatatatttagttaactgaaaattttcaaagtgatacaaag 20556948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 22740152 - 22740059
Alignment:
Q  74 aaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 166  Q
    |||||||||| ||| |||||||||||||||| |||||| |||| |||||||||| |||| || ||| ||||||||||  ||||| | |||||||    
T  22740152 aaaaaatgtggtcacacagaccatatatttgattaacttaaatatttcagagtgatacatagaggtgtacacattaagagtgtcaatctatcat 22740059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 22033056 - 22032995
Alignment:
Q  74 aaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaag 134  Q
    |||||||||| ||| ||| ||||||||||||||||||| |||||||  ||||||||||||||    
T  22033056 aaaaaatgtggtcacacataccatatatttggttaacttaaattttaaagagtggtacaaag 22032995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 26240202 - 26240271
Alignment:
Q  96 tatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 166  Q
    ||||||| ||||||| |||||||| ||| ||||||||||  ||||||||||| |||||||  |||||||||    
T  26240202 tatatttagttaacttaaattttttagaatggtacaaaggagtatacacatt-aaggtgtgaacctatcat 26240271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 32964769 - 32964694
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaa-atgtgtcatacagaccatatatttggttaactgaaatttttcagagtggt 128  Q
    |||||||||||||| ||| ||||||| ||| |||| ||| ||||||||||| ||||||| ||||| || ||||||||    
T  32964769 aaaatagtggtcacacaattgaaaaatatg-gtcacacataccatatatttagttaacttaaattctttagagtggt 32964694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 3823720 - 3823561
Alignment:
Q  4 aaaatagtggtcatgcgcatttta-ttgcgtgaccacatttttt--aacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatata 99  Q
    |||| ||||||||  ||||||||| ||||||||||| |||||||  | |||  |||||||||||||||||| ||||||||||| ||| ||||||||||||    
T  3823720 aaaaaagtggtcacacgcattttagttgcgtgaccatatttttttcagcttataaatagtggtcacgcaacagaaaaaatgtggtcacacagaccatata 3823621  T
Q  100 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctac 159  Q
     ||||||||||||||||||  |||||||||||||| ||| |||||||||| |||||||||    
T  3823620 attggttaactgaaattttcgagagtggtacaaaggggtgtacacattaagggtgtctac 3823561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 3786030 - 3785871
Alignment:
Q  4 aaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaa-cttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatat 100  Q
    |||| |||||||| |||||||||| ||||||||||| ||||||| | |||  |||||||||||||| ||| ||||||||||| ||| |||||||||| |     
T  3786030 aaaaaagtggtcacgcgcattttagttgcgtgaccatattttttcagcttataaatagtggtcacgtaacagaaaaaatgtggtcacacagaccataaaa 3785931  T
Q  101 ttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    ||||||||||||||||||  |||||||||||||| ||| |||||||||| ||||||||||    
T  3785930 ttggttaactgaaattttcgagagtggtacaaaggggtgtacacattaagggtgtctacc 3785871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 19280265 - 19280109
Alignment:
Q  4 aaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatt 101  Q
    ||||||||||||| ||| |||||| |||||||||||||||||| |||||| ||| |||||||||||| |||||||||||| ||||  |||||||||||||    
T  19280265 aaaatagtggtcacgcgaattttagttgcgtgaccacatttttcaacttctaaacagtggtcacgcatctgaaaaaatgtggtcactcagaccatatatt 19280166  T
Q  102 tggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    ||||||||| |||| |||   |||||||||||| ||| ||||| |||| ||||||||||    
T  19280165 tggttaactaaaatattt--tagtggtacaaaggggtgtacactttaagggtgtctacc 19280109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 42637996 - 42638114
Alignment:
Q  2 gaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatata 99  Q
    ||||||||||||| | |||||||||| |||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||| | ||||||||    
T  42637996 gaaaaatagtggttacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgaaaaaatgtggtcatatataccatata 42638095  T
Q  100 tttggttaactgaaatttt 118  Q
    ||| |||||||||||||||    
T  42638096 tttagttaactgaaatttt 42638114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 44080326 - 44080191
Alignment:
Q  1 ggaaaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactg-aaaaaatgt-gtcatacagaccatat 98  Q
    ||||||||||||| || || ||||||| |  |||||||||||||| |||||| |||||||||||||||||||| ||||||| | |||| |||||  ||||    
T  44080326 ggaaaaatagtgggcacgcacattttagtttgtgaccacatttttcaacttctaaatagtggtcacgcaactgcaaaaaatatggtcacacagattatat 44080227  T
Q  99 atttggttaactgaaatttttcagagtggtacaaag 134  Q
    |||||||||||||||||| |||||||||||||||||    
T  44080226 atttggttaactgaaattgttcagagtggtacaaag 44080191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 9710763 - 9710918
Alignment:
Q  1 ggaaaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatata 99  Q
    |||||||||||||||| | | ||||  ||||||||||||| |||| | |||| || ||||||||||||||| |||||||| || |||     ||||||||    
T  9710763 ggaaaaatagtggtcaagtgtatttagttgcgtgaccacagttttcagcttctaagtagtggtcacgcaaccgaaaaaatatggtca-----accatata 9710857  T
Q  100 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| ||||| ||| ||||||    
T  9710858 tttggttaactgaaatttttcagagtggtacaaaggggtgtacatattaagggtttctacc 9710918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 11509969 - 11509814
Alignment:
Q  5 aaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatattt 102  Q
    |||||| ||||| |||||||||| |||||||||||||||||| | |||| |||||  |||||||||| |||||||||||| ||| ||| | |  ||||||    
T  11509969 aaataggggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaataaaggtcacgcaagtgaaaaaatgtggtcacacaaatcgcatattt 11509870  T
Q  103 ggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtcta 158  Q
    |||||  |||||||||| |||||||||||||| ||| ||||||||||  |||||||    
T  11509869 ggttatttgaaatttttaagagtggtacaaaggggtgtacacattaagtgtgtcta 11509814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 57 - 166
Target Start/End: Original strand, 19280298 - 19280408
Alignment:
Q  57 tagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgt 155  Q
    |||||||||| | ||| ||||||||| |||| |||||||||||||||| |||||| ||| ||||||||||||||||||  ||| |||||||||| |||||    
T  19280298 tagtggtcacaccacttaaaaaatgttgtcacacagaccatatatttgattaactaaaaattttcagagtggtacaaacgggtgtacacattaagggtgt 19280397  T
Q  156 ctacctatcat 166  Q
    |||||||||||    
T  19280398 ctacctatcat 19280408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 26308679 - 26308824
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtgtc-atacagaccatat 98  Q
    |||||||||||||||| |||||||||| ||||||||||||||| || | |||| ||||||||||| |  || || ||||||||| | | ||| |||||||    
T  26308679 ggaaaaatagtggtcacgcgcattttaattgcgtgaccacattattcagcttctaaatagtggtcccagaattggaaaaatgtggccacacaaaccatat 26308778  T
Q  99 atttggttaactgaaatttttcagagtggtacaaagtggtatacac 144  Q
    ||||| |||||||||| ||||||||||  ||||||| ||| |||||    
T  26308779 atttgattaactgaaaattttcagagttatacaaagaggtgtacac 26308824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 27335405 - 27335292
Alignment:
Q  54 aaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaagg 152  Q
    ||||||| ||||||||||| |||||||||| ||| ||| |||||||  |||||||||| ||| |||||||| |||||||||| ||| ||||||||||||     
T  27335405 aaatagttgtcacgcaactaaaaaaatgtggtcacacataccatattattggttaactcaaaattttcagaatggtacaaaggggtgtacacattaaaga 27335306  T
Q  153 tgtctacctatcat 166  Q
    ||| ||||||||||    
T  27335305 tgtttacctatcat 27335292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 1705709 - 1705827
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtgtcatacagaccatata 99  Q
    |||||||||||||||| |||||||||| |||| |||||| |||||| | |||| ||||||||||||||||||| |||| |||  ||| ||| | ||| ||    
T  1705709 ggaaaaatagtggtcacgcgcattttagttgcatgaccatatttttcagcttctaaatagtggtcacgcaactaaaaatatg-atcacacatatcatgta 1705807  T
Q  100 tttggttaactgaaattttt 119  Q
    ||||||||||||||||||||    
T  1705808 tttggttaactgaaattttt 1705827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 3 - 156
Target Start/End: Complemental strand, 27707741 - 27707587
Alignment:
Q  3 aaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtgt-catacagaccatatat 100  Q
    ||||||||||||||||| ||||||| ||| | ||||||||||||||  |||||||| |||||||| ||| ||||||||||||  || ||| |||||||||    
T  27707741 aaaaatagtggtcatgcacattttagttgtgcgaccacattttttagtttcaaaat-gtggtcacacaattgaaaaaatgtgggcacacaaaccatatat 27707643  T
Q  101 ttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtc 156  Q
    ||| |||| |||| ||||| | | || || |||| |||||||| ||||||||||||    
T  27707642 ttgattaattgaatttttttaaaatgatataaagaggtatacaaattaaaggtgtc 27707587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 3823749 - 3823862
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    |||||||||||||||||||| |||||| ||| ||| |||||| ||||||||||||||||| |||||||| |||| |||||||  |||  ||| ||||| |    
T  3823749 aaaatagtggtcacgcaact-aaaaaacgtggtcacacagacaatatatttggttaactggaatttttctgagtagtacaaacgggtgaacatattaagg 3823847  T
Q  152 gtgtctacctatcat 166  Q
    |||||||||||||||    
T  3823848 gtgtctacctatcat 3823862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 166
Target Start/End: Original strand, 33488334 - 33488447
Alignment:
Q  54 aaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaagg 152  Q
    ||||||||||| ||||||| |||| ||| | ||||||| ||||||||||| ||||||| ||||||||||||||  || |||   ||||||||||||||||    
T  33488334 aaatagtggtcgcgcaactaaaaatatgcggtcatacataccatatatttagttaacttaaatttttcagagttatataaatgagtatacacattaaagg 33488433  T
Q  153 tgtctacctatcat 166  Q
    |||||| |||||||    
T  33488434 tgtctaactatcat 33488447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 5341988 - 5342087
Alignment:
Q  68 caactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 166  Q
    ||||| |||||||||| ||| |||||||||||||| | ||||||||||||||||||||| |||||||| ||| ||| |||||  | ||||||||||||||    
T  5341988 caactaaaaaaatgtggtcacacagaccatatattcgattaactgaaatttttcagagtcgtacaaaggggtgtacgcattagggatgtctacctatcat 5342087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 31545713 - 31545824
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    |||||||||||||| ||||| |||||||||| ||| | |||||||||||| ||||| |||||||||||||||||| ||||||  | | |||| ||||||     
T  31545713 aaaatagtggtcacacaactaaaaaaatgtggtcacatagaccatatattaggttacctgaaatttttcagagtgatacaaaaagatgtacatattaaaa 31545812  T
Q  152 gtgtctacctat 163  Q
     |||||||||||    
T  31545813 ttgtctacctat 31545824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 18733573 - 18733678
Alignment:
Q  54 aaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaagg 152  Q
    ||||||| ||||||||||| || ||||||| |||  || ||||||||||| ||||||| |||||||||||| ||||| |||| ||| |||||||||||||    
T  18733573 aaatagttgtcacgcaact-aagaaatgtggtcacccataccatatatttagttaacttaaatttttcagaatggtataaaggggtgtacacattaaagg 18733671  T
Q  153 tgtctac 159  Q
    |||||||    
T  18733672 tgtctac 18733678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 31545685 - 31545603
Alignment:
Q  2 gaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg 83  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||| | |||| |||||||||| || ||||||||||||||||    
T  31545685 gaaaaatagtggtcatgcacattttagttgtgtgaccacatttttcagcttctaaatagtggttactcaactgaaaaaatgtg 31545603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 39126262 - 39126360
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaa 150  Q
    |||||||| ||||||||||| ||||||||| |||| ||||| ||||||||||||||||| |||||||||||| |  |||||||  || |||||||||||    
T  39126262 aaaatagtagtcacgcaactaaaaaaatgttgtcacacagatcatatatttggttaacttaaatttttcagaataatacaaagaagtgtacacattaaa 39126360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 22432427 - 22432524
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaa 149  Q
    ||||||||||||| |||||| ||||||||| |||| |||||||||||||||| || ||| |||||||||| |||| ||||||  ||| ||||||||||    
T  22432427 aaaatagtggtcatgcaactaaaaaaatgtagtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaagggtgtacacattaa 22432524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 3786059 - 3786170
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    |||||||||||||||||||| |||||| ||| ||| |||||| ||||||||||||||||| |||||||| ||||||||  ||  |||  ||| ||||| |    
T  3786059 aaaatagtggtcacgcaact-aaaaaacgtggtcacacagacaatatatttggttaactggaatttttctgagtggta--aacgggtgaacatattaagg 3786155  T
Q  152 gtgtctacctatcat 166  Q
    |||||||||||||||    
T  3786156 gtgtctacctatcat 3786170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 27040683 - 27040761
Alignment:
Q  57 tagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaag 134  Q
    |||||||||||||||||||||| |||| ||| ||||| |||||||||||||||| ||||||||  ||||| ||||||||    
T  27040683 tagtggtcacgcaactgaaaaattgtgatcacacagatcatatatttggttaaccgaaattttctagagtagtacaaag 27040761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 5341946 - 5341833
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatat 98  Q
    |||||||||||||||||  | |||||| |||  ||||||||||||| |||||| |||||||||||||||| || ||||||| | |||| ||| |||||||    
T  5341946 ggaaaaatagtggtcatatgtattttagttgtatgaccacatttttcaacttctaaatagtggtcacgcagctaaaaaaatatggtcacacaaaccatat 5341847  T
Q  99 atttggttaactga 112  Q
    ||||  ||||||||    
T  5341846 atttaattaactga 5341833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 33488314 - 33488210
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaa--tgtg-tcatacagaccatatatttggttaactgaaa-tttttcagagtggtacaaagtggtatacacatta 148  Q
    ||||| |||||||| ||||||||||||  |||| ||| |||||| ||||||||| |||||||||| ||||||||| | |||||||| ||| |||||||||    
T  33488314 aaaattgtggtcacacaactgaaaaaaaatgtgatcacacagactatatatttgattaactgaaaatttttcagaatagtacaaagaggtgtacacatta 33488215  T
Q  149 aaggt 153  Q
    |||||    
T  33488214 aaggt 33488210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 31545498 - 31545435
Alignment:
Q  97 atatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    ||||||| ||||||||||||||  ||||| |||||||| | |||||||||||||||||||||||    
T  31545498 atatttgattaactgaaattttcgagagtagtacaaagggatatacacattaaaggtgtctacc 31545435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 4169144 - 4169214
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaa 70  Q
    |||||||||||||||| || ||||||| |||||| ||||||||||| | |||| |||||||||||||||||    
T  4169144 ggaaaaatagtggtcacgcacattttagttgcgttaccacatttttcagcttctaaatagtggtcacgcaa 4169214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 26308648 - 26308546
Alignment:
Q  57 tagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgt 155  Q
    |||||||||| ||||| ||| |||||| ||| ||| ||||||||||| ||||||||| |||||||| |||| ||||||   || |||| |||||||||||    
T  26308648 tagtggtcacacaactaaaacaatgtggtcacacaaaccatatatttagttaactgatatttttcaaagtgatacaaaaaagtgtacatattaaaggtgt 26308549  T
Q  156 cta 158  Q
    |||    
T  26308548 cta 26308546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 27079387 - 27079453
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttt 118  Q
    ||||| ||||||| |||||||||||| |||| ||| |||||||||||||||||||||| ||||||||    
T  27079387 aaaattgtggtcatgcaactgaaaaattgtggtcacacagaccatatatttggttaaccgaaatttt 27079453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 27085184 - 27085250
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttt 118  Q
    ||||| ||||||| |||||||||||| |||| ||| |||||||||||||||||||||| ||||||||    
T  27085184 aaaattgtggtcatgcaactgaaaaattgtggtcacacagaccatatatttggttaaccgaaatttt 27085250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 11501303 - 11501243
Alignment:
Q  75 aaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaag 134  Q
    ||||||||| ||| ||||||||||||||||||||  ||||| |||||||||||||||||||    
T  11501303 aaaaatgtggtcacacagaccatatatttggttatttgaaaattttcagagtggtacaaag 11501243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 11510076 - 11510146
Alignment:
Q  95 atatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 166  Q
    ||||||||  ||||||||||||||||||||  |||||||| | |||||||||||| | ||||||||||||||    
T  11510076 atatatttatttaactgaaatttttcagaggtgtacaaag-gatatacacattaaggatgtctacctatcat 11510146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 27364960 - 27364905
Alignment:
Q  111 gaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 166  Q
    ||||||||||||| ||||| |||| ||| ||||||||||| |||||||||||||||    
T  27364960 gaaatttttcagaatggtataaaggggtgtacacattaaatgtgtctacctatcat 27364905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 11501367 - 11501481
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    ||||||||| | |||||||| ||||| || | ||| ||||| ||||||||||||||||| |||||||  | ||||||| ||||  || ||||||||||      
T  11501367 aaaatagtgctaacgcaactaaaaaactgcggtcacacagatcatatatttggttaacttaaattttctaaagtggtataaaggagtgtacacattaagt 11501466  T
Q  152 gtgtctacctatcat 166  Q
    ||||| |||||||||    
T  11501467 gtgtcaacctatcat 11501481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 23163344 - 23163252
Alignment:
Q  56 atagtggtcacgcaactga--aaaaatgt-gtcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacat 146  Q
    |||||||||| ||||||||  |||||||| |||| | |||||||||||| | |||||||| |||||  |||||||||||||| |||||||||||    
T  23163344 atagtggtcatgcaactgataaaaaatgtagtcacatagaccatatattagattaactgatattttcgagagtggtacaaag-ggtatacacat 23163252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 42637926 - 42637860
Alignment:
Q  95 atatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctat 163  Q
    |||||||||||||| |||||||||||  |||||||||||| | | | |||||||| |||||||||||||    
T  42637926 atatatttggttaattgaaatttttc--agtggtacaaagggatgtgcacattaagggtgtctacctat 42637860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 4169117 - 4169038
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaag 134  Q
    |||||||| |||| ||||||||||||||| | |||  || |||||||   |||||||||||||||||||||||| ||||||||    
T  4169117 aaaatagtagtcatgcaactgaaaaaatgaggtcacgcataccatat---tggttaactgaaatttttcagagtagtacaaag 4169038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 13358992 - 13359052
Alignment:
Q  72 tgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtaca 131  Q
    ||||||||| || ||| |||||||||||||||  |||||||||||||| ||||||||||||    
T  13358992 tgaaaaaatatgatcacacagaccatatatttaattaactgaaattttccagagtggtaca 13359052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 19624375 - 19624256
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatat 98  Q
    |||||||||||||||| | |||||||| ||| ||| |||||| ||||| |||  ||||| ||||||| |||||||| |||| || |||   |||| ||||    
T  19624375 ggaaaaatagtggtcacgtgcattttagttgggtggccacatattttagcttataaata-tggtcacacaactgaagaaatatgatcacttagactatat 19624277  T
Q  99 atttggttaactgaaattttt 119  Q
    ||||| |||||||||||||||    
T  19624276 atttgattaactgaaattttt 19624256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 22432400 - 22432320
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaat 80  Q
    ||||||||||||| ||  ||||||||| |||  ||||||||||||| | |||  ||||||||| |||||||||||||||||    
T  22432400 ggaaaaatagtggacacacgcattttagttgattgaccacatttttcagcttttaaatagtggacacgcaactgaaaaaat 22432320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 41571881 - 41571797
Alignment:
Q  32 gtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggttaactgaaat 115  Q
    |||| ||||||||| |||||  |||||||||||||| |||||||||||||| || | | | |||||||||||| || ||||||||    
T  41571881 gtgatcacatttttcaacttttaaatagtggtcacgtaactgaaaaaatgtggttacatataccatatatttgattgactgaaat 41571797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 27326163 - 27326277
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    ||||||||| ||||||||| |||||||||| |||| ||| |||||||||||| |||| |||| |||   | | ||||| |||| ||| ||||||||||      
T  27326163 aaaatagtgatcacgcaaccgaaaaaatgtggtcagacaaaccatatatttgattaattgaagtttcctaaaatggtagaaaggggtgtacacattaaga 27326262  T
Q  152 gtgtctacctatcat 166  Q
    |||| |||| |||||    
T  27326263 gtgtttaccaatcat 27326277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 27332400 - 27332514
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    ||||||||| ||||||||| |||||||||| |||| ||| |||||||||||| |||| |||| |||   | | ||||| |||| ||| ||||||||||      
T  27332400 aaaatagtgatcacgcaaccgaaaaaatgtggtcagacaaaccatatatttgattaattgaagtttcctaaaatggtagaaaggggtgtacacattaaga 27332499  T
Q  152 gtgtctacctatcat 166  Q
    |||| |||| |||||    
T  27332500 gtgtttaccaatcat 27332514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 34164376 - 34164324
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttgg 104  Q
    ||||||||||||||||| || | ||||||| |||| |||||||||||||||||    
T  34164376 aaaatagtggtcacgcaccttataaaatgtggtcacacagaccatatatttgg 34164324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 38606867 - 38607028
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatat 98  Q
    ||||||||||||||||  ||||||||  |||||||||||||||||| | |||| |||||||||| |||||||||||||||||| ||||  || |||||||    
T  38606867 ggaaaaatagtggtcacacgcattttcgttgcgtgaccacatttttcagcttctaaatagtggtaacgcaactgaaaaaatgtggtcacgcaaaccatat 38606966  T
Q  99 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    || | |||||||||||||||  ||||| |||||||| ||| |||||||||| | ||||||||    
T  38606967 atgtagttaactgaaattttggagagttgtacaaaggggtgtacacattaaggatgtctacc 38607028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 5322001 - 5322136
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatat 98  Q
    |||||||||||||||| |||||||||| |||||||| || |||||| | |||| ||||| || |||||||| |||||||||||| ||| |||||||||||    
T  5322001 ggaaaaatagtggtcacgcgcattttagttgcgtgatcatatttttcagcttctaaataatgatcacgcaattgaaaaaatgtgatcacacagaccatat 5322100  T
Q  99 atttggttaactgaaatttttcagagtggtacaaag 134  Q
    |||||||||| |||||||||| |||||| |||||||    
T  5322101 atttggttaattgaaatttttgagagtgatacaaag 5322136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 31596832 - 31596704
Alignment:
Q  33 tgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtaca 131  Q
    ||||||||||||| | |||| |||||||||| ||||||||||||||||||| ||| ||| |||||||||||| ||||||| ||||||||| |||||||||    
T  31596832 tgaccacatttttcatcttctaaatagtggtaacgcaactgaaaaaatgtggtcacacataccatatatttgattaactgtaatttttcaaagtggtaca 31596733  T
Q  132 aagtggtatacacattaaaggtgtctacc 160  Q
    ||| ||| |||| |||||  |||||||||    
T  31596732 aagaggtgtacatattaagagtgtctacc 31596704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 29367094 - 29367243
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatat 98  Q
    |||||||||||||||| |||||||||| |||||||||||||||||| | |||||||||||||||||| ||| ||||||||| | || | | |||||||||    
T  29367094 ggaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttcaaaatagtggtcacacaattgaaaaaatatggttacatagaccatat 29367193  T
Q  99 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaa 149  Q
    |||| ||||| | |||||||  |||||| ||| ||| ||| ||||||||||    
T  29367194 atttagttaattaaaattttcaagagtgatac-aaggggtgtacacattaa 29367243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 33286259 - 33286130
Alignment:
Q  28 ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggttaactgaaatttttcagagtg 126  Q
    |||||||||||||||||| | |||| ||| ||||||||||||| ||||||||||| ||||  |||||||||||||||||||| | || ||||| |||| |    
T  33286259 ttgcgtgaccacatttttcagcttctaaaaagtggtcacgcaattgaaaaaatgtggtcacgcagaccatatatttggttaattaaatttttttagaggg 33286160  T
Q  127 gtacaaagtggtatacacattaaaggtgtc 156  Q
    |||||||  ||| |||||||||| ||||||    
T  33286159 gtacaaatgggtgtacacattaagggtgtc 33286130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 5573850 - 5573734
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatat 98  Q
    |||||||||||||||| | |||||||| || | ||||||||||||| |||||| ||||||||||||||||| ||||||||||| |||| | | | |||||    
T  5573850 ggaaaaatagtggtcacgtgcattttagttccatgaccacatttttcaacttctaaatagtggtcacgcaattgaaaaaatgtagtcacatatatcatat 5573751  T
Q  99 atttggttaactgaaat 115  Q
    |||||||||||||||||    
T  5573750 atttggttaactgaaat 5573734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 166
Target Start/End: Complemental strand, 38606837 - 38606726
Alignment:
Q  56 atagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtg 154  Q
    |||||||||||||| || ||||||| || ||| ||| ||||||||||| ||||||||||||||||||||||||||||||| ||| || | ||||| | ||    
T  38606837 atagtggtcacgcagctaaaaaaatatggtcacacataccatatatttagttaactgaaatttttcagagtggtacaaaggggtctaaagattaaggatg 38606738  T
Q  155 tctacctatcat 166  Q
    ||||||||||||    
T  38606737 tctacctatcat 38606726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 26493376 - 26493507
Alignment:
Q  1 ggaaaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatata 99  Q
    ||||||||||| |||| ||||||||  |||||||||||||||||| | |||| ||||||| || || |||||||||||||||| ||| ||| |  |||||    
T  26493376 ggaaaaatagttgtcacgcgcatttagttgcgtgaccacatttttcagcttctaaatagtagttacacaactgaaaaaatgtgatcacacaaa--atata 26493473  T
Q  100 tttggttaactgaaatttttcagagtggtacaaa 133  Q
    ||||||||| |||||||||| | |||||||||||    
T  26493474 tttggttaattgaaatttttaaaagtggtacaaa 26493507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 160
Target Start/End: Original strand, 1251519 - 1251676
Alignment:
Q  4 aaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatattt 102  Q
    ||||||||||||  || ||||||| | | ||| ||||||||| |  ||  |||||||||||||||||||||||||||||| ||  ||| | |||||||||    
T  1251519 aaaatagtggtcgcgcacattttagttcatgatcacatttttcaggttttaaatagtggtcacgcaactgaaaaaatgtggtctcacaaatcatatattt 1251618  T
Q  103 ggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
     |||||||||||||||  |||||||||||||  ||| |||||||||| | ||||||||    
T  1251619 agttaactgaaattttcgagagtggtacaaatgggtgtacacattaaggatgtctacc 1251676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 15233296 - 15233134
Alignment:
Q  3 aaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttc-----------aaaatagtggtcacgcaactgaaaaaatgtg-tcatac 89  Q
    ||||||||||||||||||||||||| |||||||||||| ||||| |||||            ||||||||||||||| |||||||||| |||| ||  |     
T  15233296 aaaaatagtggtcatgcgcattttagttgcgtgaccacgtttttcaacttttaaatgctggaaaaatagtggtcacgtaactgaaaaa-tgtgatcgcag 15233198  T
Q  90 agaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggt 153  Q
    |||||||||||||| ||||||||||||||||||| |||||| ||| | | ||||||||||||||    
T  15233197 agaccatatatttgattaactgaaatttttcagattggtacgaagagatgtacacattaaaggt 15233134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 31273634 - 31273751
Alignment:
Q  33 tgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtgtc-atacagaccatatatttggttaactgaaatttttcagagtggtaca 131  Q
    |||||| |||||| | |||| |||||| ||||||||||||||||| ||||| | | | |||||||||||||| |||| |||||||||  |||||||||||    
T  31273634 tgaccatatttttcagcttctaaataggggtcacgcaactgaaaacatgtggccacatagaccatatatttgattaattgaaattttcgagagtggtaca 31273733  T
Q  132 aagtggtatacacattaa 149  Q
    ||  ||||||||||||||    
T  31273734 aaaaggtatacacattaa 31273751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 5573876 - 5573991
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagacc-atatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaa 150  Q
    |||||||||||||||||| | |||||||||| ||| | ||||  |||||||| |||||||||||| ||| |||||||||||||   || |||||||||||    
T  5573876 aaaatagtggtcacgcaattaaaaaaatgtggtcacaaagacatatatatttagttaactgaaatcttttagagtggtacaaaagagtgtacacattaaa 5573975  T
Q  151 ggtgtctacctatcat 166  Q
    || |||||||||||||    
T  5573976 ggagtctacctatcat 5573991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 158
Target Start/End: Complemental strand, 15714707 - 15714601
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    |||||||||||||||||||| | |||||||| ||| | | | ||||||||| | ||||||||||||||||||||||||||||   || |||| |||||||    
T  15714707 aaaatagtggtcacgcaactaacaaaatgtggtcacataaatcatatatttagctaactgaaatttttcagagtggtacaaaaatgtgtacatattaaag 15714608  T
Q  152 gtgtcta 158  Q
    |||||||    
T  15714607 gtgtcta 15714601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 24576183 - 24576260
Alignment:
Q  83 gtcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    |||| ||||||||||||||||||||| |||||||||  |||||||||||||| ||| |||||||||  ||||||||||    
T  24576183 gtcacacagaccatatatttggttaattgaaattttcgagagtggtacaaaggggtgtacacattacgggtgtctacc 24576260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 32959630 - 32959469
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatat 98  Q
    ||||||||||||||||  | ||||||| ||| ||||||| |||||||| ||||  ||| ||||||||| || |||||||||||| ||| ||| | ||| |    
T  32959630 ggaaaaatagtggtcacacacattttagttgtgtgaccatattttttagcttcttaatggtggtcacgtaattgaaaaaatgtgatcacacaaatcatgt 32959531  T
Q  99 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    ||||||||||  |||| ||| || | | |||||||||||| || |||| |||||||||||||    
T  32959530 atttggttaatcgaaaatttccataattgtacaaagtggtgtagacataaaaggtgtctacc 32959469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 1240943 - 1241019
Alignment:
Q  4 aaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaat 80  Q
    ||||||||||||| || ||||||| | | ||||||||||||| | |||| ||||||||||||| |||||||||||||    
T  1240943 aaaatagtggtcacgcacattttagttcatgaccacatttttcagcttctaaatagtggtcacacaactgaaaaaat 1241019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 15714734 - 15714847
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatat 98  Q
    |||||||||||||||| |  ||||||| || |||||||| |||||| | |||  ||||||| ||||| || |||||||||||| || | |||||||||||    
T  15714734 ggaaaaatagtggtcacggacattttagttacgtgaccatatttttcagcttttaaatagtagtcacacagctgaaaaaatgtggttacacagaccatat 15714833  T
Q  99 atttggttaactga 112  Q
    |||| |||||||||    
T  15714834 atttagttaactga 15714847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 28700117 - 28700045
Alignment:
Q  92 accatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 164  Q
    ||||||||||| |||||||||||||||| ||| || |||||| || | |||||||||||| |||| |||||||    
T  28700117 accatatatttagttaactgaaattttttagaatgatacaaaatgatgtacacattaaagatgtcaacctatc 28700045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 40502174 - 40502226
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttgg 104  Q
    ||||||||||||||||| || ||||||||| |||| |||||||||||||||||    
T  40502174 aaaatagtggtcacgcaccttaaaaaatgtggtcacacagaccatatatttgg 40502226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 24919870 - 24919925
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggtta 107  Q
    ||||||||||||||||| || ||||||||| |||| ||||| ||||||||||||||    
T  24919870 aaaatagtggtcacgcaccttaaaaaatgtggtcacacagaacatatatttggtta 24919925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 15233315 - 15233396
Alignment:
Q  54 aaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaag 134  Q
    |||||||||||| ||| ||  | ||||||| ||| ||| || ||||||||  |||||| |||||||||||||||||||||||    
T  15233315 aaatagtggtcaagcacctagataaatgtggtcacacaaactatatatttaattaactaaaatttttcagagtggtacaaag 15233396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 26914703 - 26914631
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagt 125  Q
    ||||||||||||||| |||| |||||||||| ||| ||| | ||||||||| |||| || ||||||||||||||    
T  26914703 aaaatagtggtcacgtaact-aaaaaatgtgatcacacaaatcatatatttagttagcttaaatttttcagagt 26914631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 28700245 - 28700318
Alignment:
Q  62 gtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaag 134  Q
    ||||||||||| | |||||||| |||||| || ||||||||||||||||| | |||||  ||||||||| ||||    
T  28700245 gtcacgcaactaacaaaatgtggtcatactgaacatatatttggttaacttagattttctagagtggtataaag 28700318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 40502386 - 40502438
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttgg 104  Q
    |||||||||||||| || || ||||||||| |||| |||||||||||||||||    
T  40502386 aaaatagtggtcacacaccttaaaaaatgtggtcacacagaccatatatttgg 40502438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 24060 - 24195
Alignment:
Q  1 ggaaaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagac--cata 97  Q
    |||||||||||||||| |||||||||| ||||| ||||||||||||| |||| |||||||||||| |||||||||||||||| |||| | ||||  ||||    
T  24060 ggaaaaatagtggtcacgcgcattttaatgcgtaaccacattttttagcttctaaatagtggtcatgcaactgaaaaaatgtagtcacatagacgacata 24159  T
Q  98 tatttggttaactgaaatttttcagagtggtacaaa 133  Q
    |||| |||| |||||||||||||||| || ||||||    
T  24160 tattcggttcactgaaatttttcagattgatacaaa 24195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 22169526 - 22169366
Alignment:
Q  2 gaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatata 99  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| |||||  |||||||||||||||||||||||||||||| ||| | |  |||||||    
T  22169526 gaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcaacttataaatagtggtcacgcaactgaaaaaatgtgatcacatattccatata 22169427  T
Q  100 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    ||| |||||||||||||||  | | || |||||   ||| |||||||||| ||||||||||    
T  22169426 tttagttaactgaaattttcaaaaatgatacaatagggtgtacacattaagggtgtctacc 22169366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 15221661 - 15221775
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    |||||||||||||| ||| | |||||||||| ||| ||||||||||||||| |||||||||||||||||||| || |||||||  || ||||||||||||    
T  15221661 aaaatagtggtcacacaattaaaaaaatgtggtcacacagaccatatatttagttaactgaaatttttcagaatgatacaaaggagtgtacacattaaag 15221760  T
Q  152 gtgtctacctatcat 166  Q
    |||||| ||||||||    
T  15221761 gtgtctgcctatcat 15221775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 38522009 - 38522115
Alignment:
Q  3 aaaaatagtggtcatgcgcattttattgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatt 101  Q
    |||||||||||||| ||||||||||| |||||||||||||||| | |||| |||||||||||| |||| ||||||||||| |||| | ||||||||||||    
T  38522009 aaaaatagtggtcacgcgcattttatcgcgtgaccacatttttcagcttctaaatagtggtcatgcaattgaaaaaatgtggtcacatagaccatatatt 38522108  T
Q  102 tggttaa 108  Q
    |||||||    
T  38522109 tggttaa 38522115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 19621512 - 19621646
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaa-tagtggtcacgcaactgaaaaaatgtg-tcatacagaccata 97  Q
    |||||||||||||||| || ||||||| |||||||||||| ||||||  ||  |||| |||||||||||||| || ||||||||| ||| ||| ||||||    
T  19621512 ggaaaaatagtggtcacgcacattttagttgcgtgaccacgtttttt--ctggaaaaatagtggtcacgcaaatggaaaaatgtggtcacacataccata 19621609  T
Q  98 tatttggttaactgaaatttttcagagtggtacaaag 134  Q
    |||||||||||||||||||||||||| ||||||||||    
T  19621610 tatttggttaactgaaatttttcagaatggtacaaag 19621646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 43461740 - 43461904
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtgtcatacagaccatata 99  Q
    |||||||||||||| | | | |||||| ||||||||||  |||||| |||||| ||||||||||||| ||||||||||||| ||    | ||||||||||    
T  43461740 ggaaaaatagtggttacgtgaattttagttgcgtgaccgtatttttcaacttctaaatagtggtcacacaactgaaaaaatatggtccaaagaccatata 43461839  T
Q  100 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 164  Q
    |||| ||||||||||||||  | |||| ||||||| |||| |||||||||  |||||||||||||    
T  43461840 tttgattaactgaaattttcaaaagtgctacaaaggggtacacacattaagagtgtctacctatc 43461904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 35922802 - 35922719
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg 83  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  35922802 ggaaaaatagtggtcatacgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgaaaaaatgtg 35922719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 13312668 - 13312508
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatat 98  Q
    ||||||||||| | || |||||||||| |||||||||||||||||| | |||| |||||| |||||| ||||||| |||||||| ||| | |||||||||    
T  13312668 ggaaaaatagttgccacgcgcattttagttgcgtgaccacatttttcagcttctaaatagcggtcacccaactga-aaaatgtgttcacatagaccatat 13312570  T
Q  99 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    |||||||||| |||||||||  | | | |||||||  ||| |||||||||||||| ||||||    
T  13312569 atttggttaattgaaattttcgaaaatagtacaaaagggtgtacacattaaaggtatctacc 13312508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 43262792 - 43262904
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    |||||||| |||||  |||| || ||||||| ||| |||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||||||| |    
T  43262792 aaaatagtagtcacataactaaacaaatgtggtcacacagaccatatatttggttaactgaaatttttcaaagtagtacaaaggggtgtacacattaagg 43262891  T
Q  152 gtgtctacctatc 164  Q
    |||||||| ||||    
T  43262892 gtgtctacttatc 43262904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 33958992 - 33958879
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    ||||| ||||||| ||| || |||||||||| | | | ||||||||||||||||||| ||||||||||||||||||||||||| | |||||| ||||| |    
T  33958992 aaaattgtggtcatgcagctaaaaaaatgtgattacatagaccatatatttggttaagtgaaatttttcagagtggtacaaag-gatatacatattaagg 33958894  T
Q  152 gtgtctacctatcat 166  Q
    |||||||||||||||    
T  33958893 gtgtctacctatcat 33958879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 166
Target Start/End: Original strand, 42034857 - 42034967
Alignment:
Q  57 tagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgt 155  Q
    |||||||||||||||| |||||||||| | | ||| |||||||||||| | ||||||||||||| |||||||||||||| | | ||| |||||||| |||    
T  42034857 tagtggtcacgcaactaaaaaaatgtgattacacataccatatatttgatcaactgaaattttttagagtggtacaaagggatgtacgcattaaagatgt 42034956  T
Q  156 ctacctatcat 166  Q
    |||||||||||    
T  42034957 ctacctatcat 42034967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 13312695 - 13312776
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaa 133  Q
    |||||||||||||||||||| |||||||||| ||| ||| | ||||||| ||||||||||||||||||||||||||||||||    
T  13312695 aaaatagtggtcacgcaactaaaaaaatgtggtcacacaaatcatatatatggttaactgaaatttttcagagtggtacaaa 13312776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 35922829 - 35922942
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    ||||||||||||| |||||| ||||||| || ||  |||||||||| |||||||||||| |||||||||| |||| ||||||| ||| |||||||| |||    
T  35922829 aaaatagtggtcatgcaacttaaaaaatatggtcccacagaccataaatttggttaacttaaatttttcaaagtgatacaaagcggtgtacacatt-aag 35922927  T
Q  152 gtgtctacctatcat 166  Q
     ||||||||||||||    
T  35922928 atgtctacctatcat 35922942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 36169400 - 36169501
Alignment:
Q  28 ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggttaactgaaatttttcagagtg 126  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||| ||||| |||| ||| |||||||||||| | | ||||||||||| ||||||    
T  36169400 ttgcgtgaccatatttttcagcttctaaatagtggtcacgcaactgaaagaatgtggtcacacataccatatatttgatcagctgaaatttttgagagtg 36169499  T
Q  127 gt 128  Q
    ||    
T  36169500 gt 36169501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 166
Target Start/End: Complemental strand, 36169410 - 36169304
Alignment:
Q  60 tggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtcta 158  Q
    ||||||||||||| |||||||||| ||| ||  ||||||||||||||||||| |||||||||| |||||||||||| |   ||||||||||  |||||||    
T  36169410 tggtcacgcaact-aaaaaatgtggtcacacctaccatatatttggttaactaaaatttttcaaagtggtacaaagagaagtacacattaagagtgtcta 36169312  T
Q  159 cctatcat 166  Q
    ||||||||    
T  36169311 cctatcat 36169304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 35922704 - 35922617
Alignment:
Q  74 aaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 160  Q
    |||||||||| ||| ||| |||||||||||| |||||||||||||||||||||| ||||||| | | ||||||||||  |||||||||    
T  35922704 aaaaaatgtggtcacacataccatatatttgattaactgaaatttttcagagtgatacaaagggatgtacacattaagtgtgtctacc 35922617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 22169554 - 22169636
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaag 134  Q
    |||||| ||||||||||||| |||||||||| ||| ||| | |||| |||||||||||| ||| |||||||||||||||||||    
T  22169554 aaaataatggtcacgcaactaaaaaaatgtggtcacacatatcataaatttggttaactaaaaattttcagagtggtacaaag 22169636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 31189645 - 31189488
Alignment:
Q  4 aaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaa--aaaatgtg-tcatacagaccatata 99  Q
    |||||||||||||    ||||||| |||||||| ||||||||| | |||| |||||||  ||| |||| || |  |||||||| ||| ||| || |||||    
T  31189645 aaaatagtggtcacaaacattttagttgcgtgatcacatttttcagcttctaaatagtaatcatgcaattggacaaaaatgtggtcacacatactatata 31189546  T
Q  100 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtct 157  Q
    |||||||||||||||||||  ||||||||||||| || | |||| |||||||||||||    
T  31189545 tttggttaactgaaattttcgagagtggtacaaaatgttgtacatattaaaggtgtct 31189488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 16095587 - 16095519
Alignment:
Q  95 atatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctat 163  Q
    |||||||||||||| |||||||||  ||||||||| |||| ||| ||||||||||| ||||||||||||    
T  16095587 atatatttggttaattgaaattttcgagagtggtagaaaggggtgtacacattaaatgtgtctacctat 16095519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 33959019 - 33959178
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatat 98  Q
    |||||||||||||| |  || |||||| ||||||||||| |||||| |  ||| |||||||||||||||| ||||||||||||  ||| | |||  ||||    
T  33959019 ggaaaaatagtggttactcggattttagttgcgtgaccatatttttcagtttctaaatagtggtcacgcagctgaaaaaatgtaatcacataga-tatat 33959117  T
Q  99 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctac 159  Q
    |||| |||||||||| ||||  ||| ||||| ||||   |||||||||||| |||||||||    
T  33959118 attttgttaactgaagttttcgagaatggtataaaggaatatacacattaagggtgtctac 33959178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 151
Target Start/End: Complemental strand, 7156097 - 7155998
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    |||||||||||||   ||||||||||||||| ||||| | |||||||||||| ||||||||||||||  | |||||||||||  | | ||||||||||||    
T  7156097 aaaatagtggtcatataactgaaaaaatgtgatcatataaaccatatatttgattaactgaaattttctaaagtggtacaaaaagatgtacacattaaag 7155998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 30704401 - 30704321
Alignment:
Q  54 aaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggttaactgaaatttttcagagtggtacaaa 133  Q
    |||||||| |||||||||| || ||| || ||||   |||||||||||||| |||||||||||||| ||||||||||||||    
T  30704401 aaatagtgatcacgcaactaaataaacgtagtcacggagaccatatatttgattaactgaaattttacagagtggtacaaa 30704321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 31189710 - 31189762
Alignment:
Q  92 accatatatttggttaactgaaatttttcagagtggtacaaagtggtatacac 144  Q
    |||||||||||||||||||||||||||| | |||||||||||| ||| |||||    
T  31189710 accatatatttggttaactgaaattttttaaagtggtacaaaggggtgtacac 31189762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 42034826 - 42034749
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaa 78  Q
    |||||||||||||||| | |||||||| |||||||||||||||||| | ||||  |||||  |||||||||||||||||    
T  42034826 ggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttc-taataggagtcacgcaactgaaaaa 42034749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 15221622 - 15221554
Alignment:
Q  83 gtcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtg-gtatacacattaaa 150  Q
    |||| ||| ||||||||||||||||||| |||||||  ||| |||||||||| | || |||||||||||    
T  15221622 gtcacacaaaccatatatttggttaactaaaattttcgagaatggtacaaagcgtgtgtacacattaaa 15221554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 21549 - 21678
Alignment:
Q  30 gcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggttaactgaaatttttcagagtggt 128  Q
    |||||||||||||||| | |||| | ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |||||  | |||||     
T  21549 gcgtgaccacatttttcagcttctatatagtggtcacgcaactgaaaaaatgtggtcacacagaccatatattcggttaactgagattttctaaagtggc 21648  T
Q  129 acaaagtggtatacacattaaaggtgtctacc 160  Q
    |||||   || |||||||||||||||||||||    
T  21649 acaaa--cgtgtacacattaaaggtgtctacc 21678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 21530 - 21420
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 151  Q
    |||||| ||||||||||||| |||| || || | | ||||||| |||||||||||||||||||||||| | | ||||| |||  | | |||||||||||     
T  21530 aaaataatggtcacgcaacttaaaatatatgcttacacagaccgtatatttggttaactgaaattttttaaaatggtataaatggatgtacacattaaaa 21431  T
Q  152 gtgtctaccta 162  Q
    |||||||||||    
T  21430 gtgtctaccta 21420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 10654 - 10789
Alignment:
Q  1 ggaaaaatagtggtcatgcgcatttta-ttgcgtgaccacattttttaacttcaaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatat 98  Q
    ||||||||| |||||| | | |||||| ||||||||||||||||||||  ||  |||||||||||| |||||| ||||||| | ||||   |||||||||    
T  10654 ggaaaaataatggtcacgggtattttagttgcgtgaccacattttttattttttaaatagtggtcatgcaacttaaaaaatatagtcacctagaccatat 10753  T
Q  99 atttggttaactgaaatttttcagagtggtacaaag 134  Q
    |||||||||| |||||||||  ||||||||||||||    
T  10754 atttggttaattgaaattttctagagtggtacaaag 10789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 24932 - 25000
Alignment:
Q  55 aatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttttcag 122  Q
    |||||||||||| |||||||||| ||||| ||| |||||| |||||||||| |||||||||||| ||||    
T  24932 aatagtggtcacacaactgaaaacatgtggtcacacagactatatatttggctaactgaaatttctcag 25000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 25349 - 25415
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaatttt 118  Q
    |||||||||||||  |||||  ||||||||| | ||||||||||||||||||||||||| |||||||    
T  25349 aaaatagtggtcatacaactttaaaaatgtggttatacagaccatatatttggttaactaaaatttt 25415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 24738 - 24798
Alignment:
Q  60 tggtcacgcaactgaaaaaatgtg-tcatacagaccatatatttggttaactgaaattttt 119  Q
    ||||||||||||| | |||||||| ||| | ||||||||||||||| |||||||| |||||    
T  24738 tggtcacgcaacttataaaatgtggtcacatagaccatatatttggctaactgaatttttt 24798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 86992 - 86895
Alignment:
Q  53 aaaatagtggtcacgcaactgaaaaaatgt-gtcatacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaa 149  Q
    |||||||||||||| |||| |||||||||| |||| ||| || ||||||||| |||| |||| ||||  ||| ||||| |||| ||| ||||||||||    
T  86992 aaaatagtggtcacacaaccgaaaaaatgtggtcacacaaactatatatttgattaattgaagttttctagaatggtagaaaggggtgtacacattaa 86895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University