View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18486_high_14 (Length: 297)
Name: NF18486_high_14
Description: NF18486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18486_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 5675506 - 5675227
Alignment:
| Q |
1 |
aagcatgtgcacatgcagctcaaaacgaccggttaccagtccaaaccgttgtccaagttctctattacgaacagcaaagacttcgcgatgcaatgaatgg |
100 |
Q |
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| T |
5675506 |
aagcatgtgcacatgcagctcaaaacgaccggttaccagtccaaactgttgtccaagttctctattacgaacagcaaagacttcgcgatgcaatgaatgg |
5675407 |
T |
|
| Q |
101 |
aagtgaaactgcagaatcaccttctattcacaccaaactaaatgtatattcaggtgatattcaagtttcgaatgaacttacaagcttgcgaagagaaaat |
200 |
Q |
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| T |
5675406 |
aagtgaaactgcagaatcaccttctattcacaccaaactaaatgtatattcaggtgatattcaagtttcaaatgaacttacaagcttgcgaagagaaaat |
5675307 |
T |
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| Q |
201 |
gaagacctcaaattagaggtagtgaagttgaaaatgaaactaaaagagatcgagatttccacgcttaaatcaactgttaa |
280 |
Q |
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| T |
5675306 |
gaagacctcaaattagaggtagtgaagttgaaaatgaaactaaaagagatcgagatttccacgcttaaatcaactgttaa |
5675227 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 39780485 - 39780545
Alignment:
| Q |
190 |
gaagagaaaatgaagacctcaaattagaggtagtgaagttgaaaatgaaactaaaagagat |
250 |
Q |
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|||||||||||||||| || ||||||||| ||||||| | ||||| ||| |||||||||| |
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| T |
39780485 |
gaagagaaaatgaagaactgaaattagagatagtgaaacttaaaataaaaataaaagagat |
39780545 |
T |
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