View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18486_high_17 (Length: 251)
Name: NF18486_high_17
Description: NF18486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18486_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 50006145 - 50006379
Alignment:
| Q |
1 |
agcaaattatatttgcagtattgtttctgatgctctatatttatggcgcttatgcagagggcaggcgttgttacgcaagagcttgctaagctgaggaaga |
100 |
Q |
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| T |
50006145 |
agcaaattatattagtagtattgtttctgatgctttatatttacggc--ttatgcagagggcaggcgttgttaggcaggagcttgctaagctgaggaaga |
50006242 |
T |
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| Q |
101 |
ctgcagcttaggcatttattattgatcaattttttaattttcctatgaatttcttttgatacatcttggtttgtttaatgagattctatgtaatccttga |
200 |
Q |
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| T |
50006243 |
ctgcagcttaggcatttattattgatcaatttttgaattttcctatgaatttctttggatacatcttggtgtgttttatgagattctatgtaatcattga |
50006342 |
T |
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| Q |
201 |
gttacgtcctagaaagatttattttgagagttcatat |
237 |
Q |
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| T |
50006343 |
gtgacgtcctagaaagatttattttgagagttcatat |
50006379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 33548972 - 33549035
Alignment:
| Q |
53 |
tgcagagggcaggcgttgttacgcaagagcttgctaagctgaggaagactgcagcttaggcatt |
116 |
Q |
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|||||||||| || ||||||| |||||| |||||||||||||||||||| |||||||||||||| |
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| T |
33548972 |
tgcagagggctggtgttgttaggcaagaacttgctaagctgaggaagaccgcagcttaggcatt |
33549035 |
T |
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