View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18486_high_20 (Length: 236)
Name: NF18486_high_20
Description: NF18486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18486_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 3930447 - 3930659
Alignment:
| Q |
15 |
aatttatagaatgagggaaaaagcgggaattgtgaagattttgagaagttttggaaagatgaaattgagagaatagtgaccgttgatgggaatggttatc |
114 |
Q |
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| T |
3930447 |
aatttatagaatgagggaaaaagcgggaattgtgaagattttgagaagttttgggaagatgagattgggagaatggtggccgttgatgggaaaggttatc |
3930546 |
T |
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| Q |
115 |
gacggctgtgagtgtttgaaagggtgaatacgcggatagtgatccatggcattagaaagtgaccaatatgattattttgttgatatattccattttatat |
214 |
Q |
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| T |
3930547 |
gacggctgtgagtgtttgaaggggtgagtatgcagatagcgatccgtggcattggaaagtgaccaataggattattttgttgatatattccattttatat |
3930646 |
T |
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| Q |
215 |
ttagaattatttt |
227 |
Q |
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| T |
3930647 |
ttagaattttttt |
3930659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 13575939 - 13575830
Alignment:
| Q |
72 |
gatgaaattgagagaatagtgaccgttgatgggaatggttatcgacggctgtgagtgtttgaaagggtgaatacgcggatagtgatccatggcattagaa |
171 |
Q |
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| T |
13575939 |
gatgaaattgggagaatggtggccgttgatgagaatagttatcgacggtggtgagtgttt-aaatgatcaatacgaggattgcgatccgtggcacaagaa |
13575841 |
T |
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| Q |
172 |
agtgaccaata |
182 |
Q |
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| T |
13575840 |
aatgaccaata |
13575830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 182
Target Start/End: Complemental strand, 13565509 - 13565403
Alignment:
| Q |
76 |
aaattgagagaatagtgaccgttgatgggaatggttatcgacggctgtgagtgtttgaaagggtgaatacgcggatagtgatccatggcattagaaagtg |
175 |
Q |
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| T |
13565509 |
aaattgagagaatggtggccgttgatgacaatagttatcgacggtagtgagtgtttaaagagattgatacggggattgcgatccgtggcacaagaaagtg |
13565410 |
T |
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| Q |
176 |
accaata |
182 |
Q |
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| T |
13565409 |
accaata |
13565403 |
T |
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