View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18486_high_4 (Length: 612)
Name: NF18486_high_4
Description: NF18486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18486_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 22 - 339
Target Start/End: Original strand, 34938195 - 34938512
Alignment:
| Q |
22 |
tcgcaaatcatcgaaatccaaactccaaaaaccaactgaaatcccattccaacccaaactcgccaactccgtcaacctaatcggcactgttaacaaacct |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34938195 |
tcgcaaatcatcgaaatccaaactccaaaaaccaaccgaaatcccatttcaacccaaactcgccaactccgtcaacctaatcggcactgttaacaaacct |
34938294 |
T |
|
| Q |
122 |
attcactttcaaacctccaccgacggtaacccttccgccgccactgtcatcactcgtcttggtcatgatccttctccgttcttgattcctcnnnnnnnnc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
34938295 |
attcactttcaaacctccaccgacggtaacccttccgccgccactgtcatcactcgtcttggtcatgatccttctcagttcttgattcctcttgtttttc |
34938394 |
T |
|
| Q |
222 |
atggtgatttggctcttaccgcgcagtttcatcttaagcttaatgatgttgttcatgttgagggtcaactttctactgaagatgatcaaatcaaacttga |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34938395 |
atggtgatttggctcttaccgcgcagtttcatcttaagcttaatgatgttgttcatgttgagggtcaactttctactgaagatgatcaaatcaaacttga |
34938494 |
T |
|
| Q |
322 |
taaacctcaacaatatca |
339 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
34938495 |
taaacctcaacaatatca |
34938512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 427 - 550
Target Start/End: Original strand, 34938591 - 34938715
Alignment:
| Q |
427 |
ctgatacggcgacactggtaaatgtaaccacatgttttggtgtctgatgtcggtgctacaaagattcttatgtttgcagtaccgagaaa-acacattggc |
525 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
34938591 |
ctgatacggcgacactggtaaatgtaaccacatgttttggtgtctgatgtcggtgttacaaagattcttatgtttgcagtaccgagaaagacacactggc |
34938690 |
T |
|
| Q |
526 |
atgtcgacattggtgattatttgaa |
550 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
34938691 |
atgtcgacattggtgattatttgaa |
34938715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 34928103 - 34928255
Alignment:
| Q |
35 |
aaatccaaactccaaaaaccaactgaaatcccattccaacccaaactcgccaactccgtcaacctaatcggcactgttaacaaacctattcactttcaaa |
134 |
Q |
| |
|
||||||||| ||| |||||||| |||||| ||| |||||||||||| ||||||| |||||| |||||||||| ||||||||| |||||||| | |||| |
|
|
| T |
34928103 |
aaatccaaattcccaaaaccaagtgaaattt-atttcaacccaaactcaccaactctgtcaacataatcggcaccgttaacaaa-ctattcacctccaaa |
34928200 |
T |
|
| Q |
135 |
cctccaccgacggtaacccttccgccgccactgtcatcactcgtcttggtcatga |
189 |
Q |
| |
|
| || | ||||| ||||||| ||||||||| |||||||||| |||||| ||||| |
|
|
| T |
34928201 |
cttctcctgacggcaaccctttcgccgccacagtcatcactcatcttggccatga |
34928255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 34934635 - 34934729
Alignment:
| Q |
71 |
caacccaaactcgccaactccgtcaacctaatcggcactgttaacaaacctattcactttcaaacctccaccgacggtaacccttccgccgccac |
165 |
Q |
| |
|
|||||||||||| |||||| |||||| |||||||||| |||||||||||||||||| || |||| || | ||||| ||||||| | ||||||| |
|
|
| T |
34934635 |
caacccaaactcaacaactctgtcaacgtaatcggcaccgttaacaaacctattcacctttaaacttctcctgacggcaaccctttcaccgccac |
34934729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 546 - 597
Target Start/End: Original strand, 34938728 - 34938774
Alignment:
| Q |
546 |
ttgaatgtaatgacatgtgttggtgttatgttgttgttggacacagaacatg |
597 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34938728 |
ttgaatgtaatgacatgtgttgg-----tgttgttgttggacacagaacatg |
34938774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University