View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18486_high_7 (Length: 356)
Name: NF18486_high_7
Description: NF18486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18486_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 16923726 - 16924059
Alignment:
| Q |
18 |
caatattcaagggaaatattttcacaaaggctcctcaatcagagacatt--ctattgagaagtatccatgtacaattttgataatttattgtcccatttt |
115 |
Q |
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| T |
16923726 |
caatattcaagggaaatattttcacaaaggctcctcaaatagagacattttctattgagaagtatccatgtacaattttgataatttcttgtcctatttt |
16923825 |
T |
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| Q |
116 |
tgaaccttctcgcgctctccattcggattataaaatttgaaaaaatggggtatttgagggtgtttt-acatgttttgaaggatattttatgtttttcaga |
214 |
Q |
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| T |
16923826 |
tgaaccttctcgcgctctccattcggattataaaatttgaaaaaatggtgtatttgagggtgttttaacatgttttgaaggatgttttatgtttttcaga |
16923925 |
T |
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| Q |
215 |
ttatatagtctg------agattcataggacgtgcgagaaatcaataagattgaaaaaacaatctacca-nnnnnnncttcaatttgtgggcctaacatg |
307 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
16923926 |
ttatatagtctgaagttcaagttcataggacgtgcgagaaatcaataagattgaaaaaacaatctactattttttttcttcaatttgtgggcctaacatg |
16924025 |
T |
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| Q |
308 |
tttcttgtggggccaactctatttgattttggata |
342 |
Q |
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||| |||||||||||||||||||| |||||||||| |
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| T |
16924026 |
ttt-ttgtggggccaactctatttaattttggata |
16924059 |
T |
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