View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18486_low_1 (Length: 740)
Name: NF18486_low_1
Description: NF18486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18486_low_1 |
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| [»] scaffold0086 (1 HSPs) |
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| [»] scaffold0429 (2 HSPs) |
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Alignment Details
Target: scaffold0086 (Bit Score: 648; Significance: 0; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 17 - 725
Target Start/End: Complemental strand, 29718 - 29010
Alignment:
| Q |
17 |
gtagtgtgatcatacagccagtgggcctcatccatttcttttacatttcgagggatttatcattactaattacgatatgataatttttaagtatattatt |
116 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29718 |
gtagtgtgattatacagccagtgggcctcatccatttcttttacatttcgagggatttatcattactaattacgatatgataatttttaagtatattatt |
29619 |
T |
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| Q |
117 |
gttttcttaaaaagaacatgtccacttgttcaccctgcttcagcgacatatcaaggtcacttataaccttgactctaacagcaatccaattgatttgggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29618 |
gttttcttaaaaagaacatgtccacttgttcaccctgcttcagcgacatatcaaggtcacttataaccttgactctaacagcaatccaattgatttgggt |
29519 |
T |
|
| Q |
217 |
gaacttgcttatttgttttgagtggcataataatggtaatgcaattaagtagaaaagaagagctcgccgaaaaatcatatgataggaatcaacatatttt |
316 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29518 |
gaacttgcttatttgttttgagtggcctaataatggtaatgcaattaagtcgaaaagaagagcttgccgaaaaatcatatgataggaatcaacatatttt |
29419 |
T |
|
| Q |
317 |
aacctaaataatctggaggttttgtatcaagcttgtgtatccataatactttaatttgtaggtcatgttactgtcactaaaaaagaaagttggggaaatg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29418 |
aacctaaataatctggaggttttgtatcaagcttgtgtatccataatactttaatttgtaggtcatgttactgtcactaaaaaagaaagttggggaaatg |
29319 |
T |
|
| Q |
417 |
acaatctttaaattatttctattatgctacattttcagaatagtaatacttatctaggattcaatctttcttcaaatattatgtcttttgaatataattt |
516 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29318 |
acgatctttaaattatttctattatgctacattttcagaatagtaatacttatctaggattcaatctttcttcaaatattatgtcatttgaatataattt |
29219 |
T |
|
| Q |
517 |
aagcgcaaatataatgtcattttggtctgctatatctatgctgcagctacttaatgtctaaatctttgagtcnnnnnnnagtaaaaggagcatctgctga |
616 |
Q |
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| T |
29218 |
aagcgcaaatataatgtcattttgatctgctatatctatgctgcagctacttaatgtctaaatcattgaatctttttttagtaaaaggagcatctgctga |
29119 |
T |
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| Q |
617 |
atcaatagcataattgatgattatttttcaggctaatgttagtagttgatatgttaaggggagagggacttgttagtagcagaattcaaaccccataact |
716 |
Q |
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| T |
29118 |
atcaatagcataattgatgattatttttcaggcaaatgttagtagttgatatgttaaggggagagggacttgttagtagcagaattcaaaccccataact |
29019 |
T |
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| Q |
717 |
cctacataa |
725 |
Q |
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||||||||| |
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| T |
29018 |
cctacataa |
29010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0429 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 605 - 727
Target Start/End: Original strand, 9830 - 9952
Alignment:
| Q |
605 |
agcatctgctgaatcaatagcataattgatgattatttttcaggctaatgttagtagttgatatgttaaggggagagggacttgttagtagcagaattca |
704 |
Q |
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|||||||| ||||||||||||||| |||||||||||||| |||| ||||||| ||||||||| |||| |||||||||||| |||||||||||||||| |
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| T |
9830 |
agcatctgaagaatcaatagcataactgatgattatttttgaggcaaatgttaatagttgatacgttagggggagagggacctgttagtagcagaatttg |
9929 |
T |
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| Q |
705 |
aaccccataactcctacataata |
727 |
Q |
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|||| | ||||||||||||||| |
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| T |
9930 |
gaccctagaactcctacataata |
9952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0429; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 203 - 404
Target Start/End: Original strand, 8325 - 8531
Alignment:
| Q |
203 |
caattgatttgggtgaacttgcttatttgtttt--gagtggcataataatggtaatgcaattaagtagaaaagaagagctcgccgaaaaatcatatgata |
300 |
Q |
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| T |
8325 |
caattgatttgggtgaacttgctaatgtgttttttgggtggcctaattgttgtaatggaattaagtaccaaggaagagcttgccaaaaaaccttatgata |
8424 |
T |
|
| Q |
301 |
ggaatcaacatattttaacc---taaataatctggaggttttgtatcaagcttgtgtatccataatactttaatttgtaggtcatgttactgtcactaaa |
397 |
Q |
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| T |
8425 |
tgaatcaacatattttaaccaaacaaagaatatggaggtttgctatcaagattttgcatgcatcggacttgaatttgtaagtcatgttactgacactcga |
8524 |
T |
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| Q |
398 |
aaagaaa |
404 |
Q |
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| T |
8525 |
aaagaaa |
8531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 15713366 - 15713236
Alignment:
| Q |
31 |
cagccagtgggcctcatccatttcttttacatttcgagggatttat--cattactaattacgatatgataatttttaagtatattattgttttcttaaa- |
127 |
Q |
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|||||||||| ||| |||||| ||| |||||||| ||||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||| ||||| |
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| T |
15713366 |
cagccagtggacctgatccatctctattacattttgagggatttatatcattacgaattacaatatgataatttttatgtatattattgttttgttaaag |
15713267 |
T |
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| Q |
128 |
aagaacatgtccacttgttcaccctgcttca |
158 |
Q |
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| T |
15713266 |
aagaacatgtacaattgttcaccctacttca |
15713236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 195 - 306
Target Start/End: Complemental strand, 15713164 - 15713052
Alignment:
| Q |
195 |
cagcaatccaattgatttgggtgaacttgcttatttgtttt--gagtggcataataatggtaatgcaattaagtagaaaagaagagctcgccgaaaaatc |
292 |
Q |
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|||||||||||||||||| ||||||| |||| || |||||| | ||||| |||||||||||||| ||| |||||||||| ||||||| ||||||||||| |
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| T |
15713164 |
cagcaatccaattgatttaggtgaacatgctaatgtgttttctgggtggcctaataatggtaatggaatgaagtagaaaa-aagagcttgccgaaaaatc |
15713066 |
T |
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| Q |
293 |
atatgataggaatc |
306 |
Q |
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| T |
15713065 |
atatgataggaatc |
15713052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 326 - 480
Target Start/End: Complemental strand, 15713055 - 15712904
Alignment:
| Q |
326 |
aatctggaggttttgtatcaagcttgtgtatccataatactttaatttgtaggtcatgttactgtcactaaaaaagaaagttggggaaatgacaatcttt |
425 |
Q |
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||||||||||||||||| |||||||||||||||||||||| ||| |||||||| ||||||| ||||||||| |||| ||||| || | | |||||| |
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| T |
15713055 |
aatctggaggttttgta---agcttgtgtatccataatacttcaatgtgtaggtcgtgttacttacactaaaaatgaaaattgggaaagtcatgatcttt |
15712959 |
T |
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| Q |
426 |
aaattatttctattatgctacattttcagaatagtaatacttatctaggattcaa |
480 |
Q |
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||| ||||| ||| || | || | ||||||||||| ||||||||||| |||||| |
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| T |
15712958 |
aaactatttatatgatccaacctcttcagaatagtggtacttatctagcattcaa |
15712904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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