View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18486_low_10 (Length: 337)
Name: NF18486_low_10
Description: NF18486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18486_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 34098917 - 34099203
Alignment:
| Q |
1 |
caggcttaacggcgtcgtttcgaaccaccactaacttctctgaatcgatgtcgatcggtcggatcttcatcggagacatgattttaacagaaatgnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
34098917 |
caggcttaacggcgtcgtttcgaaccaccactaacttctctgaatcgatgtcgatcggttggatcttcatcggagacatgatttcaacagaaatgaaaaa |
34099016 |
T |
|
| Q |
101 |
nnn--tgcaagaaaaagtttctgaaaatcttcgtaaaactacactacactacagtatcatctcgtggaacacgtggcggcgatgatcggcaagacgtgca |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34099017 |
aaaaatgcaagaaaaagtttctgaaaatcttcgtaaaactacactacactacagtatcatctcgtggaacacgtggcggcgatgatcggcaagacgtgca |
34099116 |
T |
|
| Q |
199 |
ttgttaatggaaaaagaagaaacgttcgccggaatgttcatttcaccggcgagtttcactatcgccggctatgtgtttgttctatag |
285 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34099117 |
ttgttaatagaaaaagaagaaacgttcgccggaatgttcatttcaccggcgagtttcactatcgccggcaatgtgtttgttctatag |
34099203 |
T |
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