View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18486_low_11 (Length: 313)

Name: NF18486_low_11
Description: NF18486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18486_low_11
NF18486_low_11
[»] chr1 (27 HSPs)
chr1 (1-302)||(34490233-34490535)
chr1 (1-167)||(5831578-5831743)
chr1 (1-167)||(29676984-29677148)
chr1 (1-167)||(29167710-29167873)
chr1 (12-133)||(25238533-25238653)
chr1 (10-150)||(2569963-2570101)
chr1 (80-167)||(13351009-13351096)
chr1 (1-132)||(42604264-42604394)
chr1 (1-167)||(38951953-38952118)
chr1 (80-167)||(5855228-5855315)
chr1 (10-167)||(34364286-34364441)
chr1 (85-164)||(13350889-13350968)
chr1 (84-167)||(34490092-34490175)
chr1 (80-165)||(5855012-5855096)
chr1 (17-134)||(9929662-9929778)
chr1 (82-134)||(34364169-34364221)
chr1 (80-134)||(9929896-9929950)
chr1 (93-150)||(29677206-29677263)
chr1 (92-152)||(28499662-28499722)
chr1 (88-159)||(29168548-29168620)
chr1 (108-167)||(34941703-34941762)
chr1 (93-165)||(42604114-42604186)
chr1 (84-135)||(2569891-2569942)
chr1 (91-134)||(38951840-38951883)
chr1 (80-118)||(38244825-38244863)
chr1 (82-115)||(9468064-9468097)
chr1 (85-161)||(5831442-5831517)
[»] chr4 (28 HSPs)
chr4 (1-167)||(1966733-1966896)
chr4 (8-167)||(14351115-14351273)
chr4 (1-167)||(19596828-19596994)
chr4 (1-134)||(42908614-42908745)
chr4 (1-165)||(17633242-17633404)
chr4 (80-165)||(17633460-17633545)
chr4 (1-150)||(9809120-9809270)
chr4 (1-150)||(9810806-9810957)
chr4 (80-146)||(24669297-24669363)
chr4 (80-159)||(19596691-19596770)
chr4 (1-65)||(33179758-33179822)
chr4 (1-71)||(16583642-16583712)
chr4 (1-167)||(8740692-8740854)
chr4 (80-165)||(9808979-9809064)
chr4 (80-161)||(16583505-16583586)
chr4 (80-160)||(19746941-19747021)
chr4 (80-160)||(19792785-19792865)
chr4 (1-65)||(33249615-33249679)
chr4 (80-160)||(55666943-55667023)
chr4 (80-165)||(9810665-9810750)
chr4 (84-161)||(25007625-25007701)
chr4 (80-167)||(8740600-8740682)
chr4 (1-54)||(2433757-2433810)
chr4 (10-46)||(55666844-55666880)
chr4 (10-45)||(24669239-24669274)
chr4 (126-167)||(15523144-15523185)
chr4 (82-134)||(8740912-8740964)
chr4 (80-120)||(35544538-35544578)
[»] chr2 (14 HSPs)
chr2 (1-164)||(1400675-1400837)
chr2 (10-167)||(28527222-28527377)
chr2 (12-134)||(33667372-33667493)
chr2 (1-167)||(30905949-30906114)
chr2 (80-157)||(41212430-41212507)
chr2 (81-161)||(30906171-30906251)
chr2 (1-69)||(43900574-43900642)
chr2 (80-159)||(43900439-43900518)
chr2 (82-156)||(45305881-45305955)
chr2 (1-54)||(45306012-45306065)
chr2 (82-134)||(7378588-7378640)
chr2 (80-129)||(33667279-33667328)
chr2 (16-45)||(34175180-34175209)
chr2 (85-165)||(34175049-34175129)
[»] chr7 (23 HSPs)
chr7 (10-167)||(4290881-4291037)
chr7 (1-167)||(31303499-31303663)
chr7 (11-167)||(28804885-28805043)
chr7 (2-167)||(21548499-21548662)
chr7 (1-156)||(21589669-21589823)
chr7 (1-167)||(5083691-5083855)
chr7 (10-135)||(18312881-18313005)
chr7 (80-161)||(28805142-28805223)
chr7 (80-161)||(18312736-18312817)
chr7 (26-127)||(15958251-15958351)
chr7 (1-135)||(20556812-20556948)
chr7 (80-167)||(32964875-32964962)
chr7 (1-67)||(5174912-5174978)
chr7 (82-135)||(22033186-22033239)
chr7 (80-161)||(31303362-31303443)
chr7 (80-132)||(15958433-15958485)
chr7 (17-69)||(22740654-22740706)
chr7 (82-161)||(20556675-20556754)
chr7 (80-167)||(22740059-22740146)
chr7 (80-135)||(22032995-22033050)
chr7 (1-54)||(27523497-27523550)
chr7 (82-161)||(21548362-21548440)
chr7 (83-167)||(26240190-26240271)
[»] chr8 (25 HSPs)
chr8 (1-167)||(38606726-38606891)
chr8 (10-159)||(15714601-15714749)
chr8 (1-167)||(5573826-5573991)
chr8 (1-71)||(5321955-5322025)
chr8 (81-161)||(24576180-24576260)
chr8 (1-130)||(26493272-26493400)
chr8 (10-152)||(24575821-24575961)
chr8 (80-161)||(31596704-31596785)
chr8 (11-71)||(1251470-1251530)
chr8 (1-71)||(1240894-1240964)
chr8 (80-135)||(5322081-5322136)
chr8 (91-154)||(15233134-15233197)
chr8 (1-43)||(29367076-29367118)
chr8 (80-150)||(31273681-31273751)
chr8 (80-161)||(1251595-1251676)
chr8 (12-167)||(24537875-24538034)
chr8 (80-157)||(33286130-33286207)
chr8 (80-161)||(38606947-38607028)
chr8 (1-45)||(15233274-15233318)
chr8 (93-165)||(28700045-28700117)
chr8 (10-141)||(6809850-6809981)
chr8 (80-135)||(15233341-15233396)
chr8 (10-126)||(26914631-26914745)
chr8 (14-71)||(31596853-31596911)
chr8 (16-71)||(31273555-31273610)
[»] chr6 (31 HSPs)
chr6 (1-135)||(10304631-10304763)
chr6 (10-165)||(2430507-2430661)
chr6 (11-135)||(138645-138768)
chr6 (11-135)||(146666-146789)
chr6 (1-167)||(2835008-2835173)
chr6 (39-164)||(30056027-30056152)
chr6 (1-150)||(9068452-9068599)
chr6 (1-164)||(22608406-22608571)
chr6 (80-165)||(24386335-24386420)
chr6 (10-134)||(3222486-3222610)
chr6 (13-160)||(23595202-23595345)
chr6 (10-166)||(3620659-3620814)
chr6 (84-150)||(22608281-22608347)
chr6 (80-133)||(11108102-11108155)
chr6 (80-165)||(20084581-20084666)
chr6 (1-54)||(33815026-33815079)
chr6 (82-158)||(23595066-23595142)
chr6 (80-130)||(7915717-7915767)
chr6 (85-161)||(7915606-7915683)
chr6 (81-161)||(138813-138892)
chr6 (81-161)||(146834-146913)
chr6 (81-167)||(18980401-18980487)
chr6 (51-156)||(7706773-7706878)
chr6 (10-71)||(7706865-7706926)
chr6 (80-159)||(3222343-3222421)
chr6 (81-167)||(20084729-20084815)
chr6 (80-160)||(11108195-11108275)
chr6 (84-148)||(13767125-13767189)
chr6 (80-135)||(9068328-9068383)
chr6 (1-44)||(9474675-9474718)
chr6 (81-165)||(24386188-24386272)
[»] chr5 (25 HSPs)
chr5 (10-167)||(15221619-15221775)
chr5 (1-167)||(35922778-35922942)
chr5 (1-167)||(42034802-42034967)
chr5 (1-134)||(13312644-13312776)
chr5 (12-167)||(33958879-33959032)
chr5 (1-135)||(22169503-22169636)
chr5 (80-165)||(43262819-43262904)
chr5 (80-161)||(35922617-35922698)
chr5 (80-135)||(19621591-19621646)
chr5 (80-167)||(36169304-36169391)
chr5 (1-71)||(19621466-19621536)
chr5 (80-158)||(31189488-31189566)
chr5 (1-71)||(38521961-38522031)
chr5 (3-71)||(2477302-2477370)
chr5 (12-71)||(43461694-43461753)
chr5 (96-164)||(16095519-16095587)
chr5 (1-45)||(30704398-30704442)
chr5 (91-165)||(43461830-43461904)
chr5 (1-42)||(43262708-43262749)
chr5 (93-145)||(31189710-31189762)
chr5 (81-151)||(15221554-15221625)
chr5 (91-134)||(30704321-30704364)
chr5 (80-161)||(13312508-13312589)
chr5 (1-47)||(30045894-30045940)
chr5 (80-129)||(36169452-36169501)
[»] scaffold1126 (2 HSPs)
scaffold1126 (1-167)||(106-272)
scaffold1126 (80-161)||(328-409)
[»] chr3 (46 HSPs)
chr3 (9-167)||(5341930-5342087)
chr3 (1-167)||(19280244-19280408)
chr3 (1-159)||(26308546-26308703)
chr3 (1-167)||(3823699-3823862)
chr3 (1-164)||(31545662-31545824)
chr3 (1-167)||(3786009-3786170)
chr3 (1-164)||(42637860-42638019)
chr3 (80-160)||(3823561-3823641)
chr3 (80-161)||(3785871-3785952)
chr3 (1-167)||(11501316-11501481)
chr3 (13-150)||(22432388-22432524)
chr3 (1-135)||(4169038-4169168)
chr3 (1-135)||(1705600-1705733)
chr3 (93-161)||(9710850-9710918)
chr3 (80-160)||(18733598-18733678)
chr3 (80-167)||(27335292-27335379)
chr3 (14-151)||(39126222-39126360)
chr3 (10-60)||(9710728-9710778)
chr3 (1-167)||(19624351-19624516)
chr3 (80-135)||(11501243-11501298)
chr3 (9-167)||(11509988-11510146)
chr3 (82-135)||(44080191-44080244)
chr3 (83-167)||(33488363-33488447)
chr3 (1-120)||(27707719-27707837)
chr3 (98-161)||(31545435-31545498)
chr3 (80-154)||(33488210-33488285)
chr3 (80-161)||(19280109-19280188)
chr3 (10-64)||(42481355-42481409)
chr3 (1-54)||(13358102-13358155)
chr3 (13-122)||(44080314-44080422)
chr3 (80-159)||(11509814-11509893)
chr3 (85-132)||(13359005-13359052)
chr3 (80-119)||(27079414-27079453)
chr3 (80-119)||(27085211-27085250)
chr3 (10-45)||(27335402-27335437)
chr3 (112-167)||(27364905-27364960)
chr3 (12-71)||(34627292-34627351)
chr3 (80-145)||(26308759-26308824)
chr3 (14-45)||(18733545-18733576)
chr3 (84-147)||(23163252-23163314)
chr3 (80-135)||(27040706-27040761)
chr3 (10-45)||(27365008-27365043)
chr3 (1-46)||(27079314-27079359)
chr3 (1-46)||(27085111-27085156)
chr3 (80-157)||(27707587-27707664)
chr3 (10-55)||(55165100-55165145)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-65)||(24020-24084)
[»] scaffold0126 (2 HSPs)
scaffold0126 (80-161)||(21599-21678)
scaffold0126 (87-163)||(21420-21496)
[»] scaffold0251 (2 HSPs)
scaffold0251 (10-54)||(10625-10669)
scaffold0251 (91-135)||(10745-10789)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-45)||(112191-112235)
[»] scaffold0213 (2 HSPs)
scaffold0213 (80-123)||(24957-25000)
scaffold0213 (80-120)||(24758-24798)
[»] scaffold0043 (1 HSPs)
scaffold0043 (10-45)||(87077-87112)
[»] scaffold0016 (1 HSPs)
scaffold0016 (85-124)||(49453-49492)
[»] scaffold0291 (1 HSPs)
scaffold0291 (1-45)||(5903-5947)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 34490233 - 34490535
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaa-ctagtggtcacgcaactnnnnnnnntgtggtcacacagaccatat 99  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||        ||||||||||||||||||||    
T  34490233 aaatgcgcatgaccactatttttctagttagttaaccaaataaattctgaaaaaactagtggtcacgcaactaaaaaaa-tgtggtcacacagaccatat 34490331  T
Q  100 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcatgagaatatgagttttactaatgagaagagtat 199  Q
    |||| || |||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||| |||||||| | ||||||||||||||||||||    
T  34490332 attttgtaaactgaaatttttcagagtggtacaaagtggtgtacacattaagagtgtctacctatcataagaatatgggatttactaatgagaagagtat 34490431  T
Q  200 ttcccctagtaaggttattcatgaagtctttgacaaacatcttctctgactcacattattttctatttat-aaaacctcaaaattgctttaattgatccc 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34490432 ttcccctagtaaggttattcatgaagtctttgacaaacatcttctctgactcacattattttctatttataaaaacctcaaaattgctttaattgatccc 34490531  T
Q  299 ctat 302  Q
    ||||    
T  34490532 ctat 34490535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 5831578 - 5831743
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    ||||||| || ||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||        | |||||||||||||||||||    
T  5831578 aaatgcgtattaccacaatttttccacttagttaaccaaataaattctggaaaattagtggtcacgcaactaaaaaaa-tatggtcacacagaccatata 5831676  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||||| ||||||||||||||||| ||||||| ||| ||||| |||||||||||| ||| ||||    
T  5831677 tttggttaattgaaatttttcagagtgatacaaaggggtgtacacgttaaaggtgtctccctgtcat 5831743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 29677148 - 29676984
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||        ||||||||||||| |||||||    
T  29677148 aaatgtgcgtgaccactatttttccacttagttaaccaaataaattctgaaaaaatagtggtcatgcaact--aaaaaatgtggtcacacaggccatata 29677051  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||||||| |||||||||| |||| ||||||| |   ||||||||||||||||||| |||||||    
T  29677050 tttggttaactaaaatttttcaaagtgctacaaagggacgtacacattaaaggtgtctaactatcat 29676984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 29167873 - 29167710
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||        |||||||||||| ||||||||    
T  29167873 aaatgcgcatgaccactatttttccacttagttaaccaaataaattccgaaaaactagtggtcaggcaact--aaaaaatgtggtcacacaaaccatata 29167776  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||| |||||||||||||||||| | ||||| || |   ||||||||| |||| ||||||| ||||||    
T  29167775 tttagttaactgaaatttttcaaaatggtataatg-aatatacacatcaaagatgtctacgtatcat 29167710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 25238533 - 25238653
Alignment:
Q  12 accactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaact 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||        |||||||||| | |||||||||||| ||||||    
T  25238533 accactatttttccacttagttaaccaaataaattctgaaaaactagtagtcacataact-aaaaaaatgtggtcacagaaaccatatatttgattaact 25238631  T
Q  112 gaaatttttcagagtggtacaa 133  Q
    ||||||||||||||||||||||    
T  25238632 gaaatttttcagagtggtacaa 25238653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 2569963 - 2570101
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaa 109  Q
    |||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||        | |||| ||||| |||||||| ||||||||    
T  2569963 tgaccactatttttccacttagttaaccaaataaattctagaaaaatagtggtcacgcaact-caaaaaatatggtaacacaaaccatatacttggttaa 2570061  T
Q  110 ctgaaatttttcagagtggtacaaagtggtatacacattaa 150  Q
    || ||||||| ||||| ||||||||| ||| ||||||||||    
T  2570062 cttaaattttccagagcggtacaaag-ggtgtacacattaa 2570101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 13351009 - 13351096
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||| |||||||||||| |||||| |||||||    
T  13351009 tgtggtcacaaagaccatatatttggttaagttaaatttttcagagtggtacaaaggggtgtacacattaaagatgtctagctatcat 13351096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 42604264 - 42604394
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| |||||        |||||||||||| ||||||||    
T  42604264 aaatgcgcgtgaccactatttttccacttagttaacgaaataaattctgaaaaaatagtgatcacacaact-aaaacaatgtggtcacacaaaccatata 42604362  T
Q  101 tttggttaactgaaatttttcagagtggtaca 132  Q
    |||| |||||  ||| |||||| |||||||||    
T  42604363 tttgattaaccaaaaattttcaaagtggtaca 42604394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 38951953 - 38952118
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||| || | || ||||||||| ||||||        | |||||||| | |||||| |    
T  38951953 aaatgcgtctgaccactatttttctacttagttaaccaaataaattttggagaaatagtggtcaagcaact-aaaaaaatatggtcacatataccataca 38952051  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||| ||||||||||||||||||||||| ||||||| ||| || || |||| | |||||| |||||||    
T  38952052 ttttgttaactgaaatttttcagagtgatacaaagaggtgtatactttaaggttgtctatctatcat 38952118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 5855228 - 5855315
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||   || |||| ||||  ||||||||||||||||    
T  5855228 tgtggtcacacataccatatatttggttaacttaaatttttcagagtggtacaaaagagtgtacatattagtggtgtctacctatcat 5855315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 34364286 - 34364441
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaa 109  Q
    ||||||| |||||| |||||||||||||||| |||||||| |||| || ||||||| |||||        |||| | ||||||| |||||||||| ||||    
T  34364286 tgaccacaattttttcacttagttaaccaaaaaaattctggaaaaataatggtcacacaactaaagaa--tgtgattacacagagcatatatttgattaa 34364383  T
Q  110 ctgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    || |||||||||||||| |||||||| | | ||||| ||||| ||||| ||| |||||    
T  34364384 cttaaatttttcagagtagtacaaagggatgtacacgttaaatgtgtcaaccaatcat 34364441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 13350968 - 13350889
Alignment:
Q  85 tcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctat 164  Q
    ||||||| |||||||||||||||||||||||||||  |||||||||||||  ||| |||||||||| | |||||||||||    
T  13350968 tcacacataccatatatttggttaactgaaattttcgagagtggtacaaaagggtgtacacattaaggatgtctacctat 13350889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 34490175 - 34490092
Alignment:
Q  84 gtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||||||||||||||||||| ||||||||||||||| || |||||||| ||  | |||||||||||| |||||||||| |||||    
T  34490175 gtcacacagaccatatatttagttaactgaaattttacatagtggtaccaaaagatatacacattaagggtgtctaccaatcat 34490092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 5855096 - 5855012
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 165  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||| | | || |||||||  |||||||||||||    
T  5855096 tgtggtcacacagaccatatatttggttagctgaaatttttca-agtagtacaaagggatgtaaacattaagcgtgtctacctatc 5855012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 9929778 - 9929662
Alignment:
Q  17 tatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaactgaaat 116  Q
    |||||||||| ||||||||||||||||||| ||||||| ||  |||| |||||||        |||||||| ||| ||||||||||||||||||| ||||    
T  9929778 tatttttccatttagttaaccaaataaattttgaaaaaatatcggtcgcgcaactaaaataa-tgtggtcatacaaaccatatatttggttaacttaaat 9929680  T
Q  117 ttttcagagtggtacaaa 134  Q
    |||  |||||||||||||    
T  9929679 tttcaagagtggtacaaa 9929662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 34364221 - 34364169
Alignment:
Q  82 tggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaa 134  Q
    |||||||||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  34364221 tggtcacacagaccatatatttagttaacttaaattttccagagtggtacaaa 34364169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 9929896 - 9929950
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaa 134  Q
    |||||||||||||||||||||||| ||||| |||||||||||| | |||||||||    
T  9929896 tgtggtcacacagaccatatatttagttaattgaaatttttcaaaatggtacaaa 9929950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 29677206 - 29677263
Alignment:
Q  93 accatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaa 150  Q
    |||||||||||| |||||| |||||||| |||||||||||||| ||| ||||||||||    
T  29677206 accatatatttgtttaacttaaatttttgagagtggtacaaagaggtgtacacattaa 29677263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 28499662 - 28499722
Alignment:
Q  92 gaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaag 152  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| || | ||||| ||||||    
T  28499662 gaccatatatttggttaactgaaattttttagaatggtacaaaatgatgtacacgttaaag 28499722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 29168548 - 29168620
Alignment:
Q  88 cacagaccatatatttggttaactgaaatttttcaga-gtggtacaaagtggtatacacattaaaggtgtcta 159  Q
    |||||||||||||||||||||||||||||||| || | ||||||| || |  | |||||||||||||||||||    
T  29168548 cacagaccatatatttggttaactgaaattttacaaaggtggtacgaaatattgtacacattaaaggtgtcta 29168620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 34941762 - 34941703
Alignment:
Q  108 aactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||||||||||||||||||||||||||| | | |||||||||| | ||||| ||||||||    
T  34941762 aactgaaatttttcagagtggtacaaagggatgtacacattaaggatgtcttcctatcat 34941703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 42604186 - 42604114
Alignment:
Q  93 accatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 165  Q
    |||||| |||||||||| |||||||||| | | |||||||||  ||| |||||||||| | ||||||||||||    
T  42604186 accatacatttggttaattgaaattttttaaaatggtacaaatgggtgtacacattaaggttgtctacctatc 42604114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 2569942 - 2569891
Alignment:
Q  84 gtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaag 135  Q
    ||||||||||||||||||||||||||| |||| |||| ||| | ||||||||    
T  2569942 gtcacacagaccatatatttggttaaccgaaaatttttagaatagtacaaag 2569891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 38951883 - 38951840
Alignment:
Q  91 agaccatatatttggttaactgaaatttttcagagtggtacaaa 134  Q
    ||||||||||||||||||||| |||||||  |||||||||||||    
T  38951883 agaccatatatttggttaacttaaattttcgagagtggtacaaa 38951840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 38244825 - 38244863
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaattt 118  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  38244825 tgtggtcacacagaccatatatttggctaacttaaattt 38244863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 9468097 - 9468064
Alignment:
Q  82 tggtcacacagaccatatatttggttaactgaaa 115  Q
    |||||||||| |||||||||||||||||||||||    
T  9468097 tggtcacacataccatatatttggttaactgaaa 9468064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 5831517 - 5831442
Alignment:
Q  85 tcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    ||||||| ||||||| ||| ||||||| |||||||||||| || ||||||  ||| ||| ||||||| |||||||||    
T  5831517 tcacacataccatatctttagttaactaaaatttttcagaatgttacaaaagggtgtactcattaaa-gtgtctacc 5831442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 1966896 - 1966733
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||    
T  1966896 aaatgcgcgtgaccactatttttccacttaattaaccaaataaattctggaaaactagtggtcacgcaact--aaaaaatgtggtcacacagaccatata 1966799  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||||||||||| ||||||||||||||||||  ||| || ||| ||| ||||||||||||||||    
T  1966798 tttggttaactgaaa-ttttcagagtggtacaaaagggtgtatacagtaagggtgtctacctatcat 1966733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 14351115 - 14351273
Alignment:
Q  8 catgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggtt 107  Q
    ||||||||||||||||||||||||||||||||||||||| ||  ||| ||||||||||||||||        | |||||||||| |||||||||||||||    
T  14351115 catgaccactatttttccacttagttaaccaaataaattttgtcaaaatagtggtcacgcaactagaaaaa-tatggtcacacaaaccatatatttggtt 14351213  T
Q  108 aactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||| || ||||| ||||||||||||||  ||  ||||||||| ||||||||||||||||    
T  14351214 aactaaattttttgagagtggtacaaagaagtgcacacattaagggtgtctacctatcat 14351273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 19596828 - 19596994
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||||||||  ||||||||||||| ||        |||||||||||  ||||||||    
T  19596828 aaatgcgcatgactactatttacccacttagttaaccaaataaattctgaaaacatagtggtcacgcagctaaaaaaaatgtggtcacacgtaccatata 19596927  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||||||||||||||| || |  ||||||||  | | |||||||||| || |||||||||||||    
T  19596928 tttggttaactgaaattttccaaaagggtacaaaaggatgtacacattaagggcgtctacctatcat 19596994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 42908614 - 42908745
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||| |||||||||| ||||| ||||||||||||||||||||||| |||| ||||||| || |||||        |||||||||||| ||||||||    
T  42908614 aaatgcgcgtgaccactatgtttcctcttagttaaccaaataaattctggaaaaatagtggtgactcaactaaaaaa--tgtggtcacacataccatata 42908711  T
Q  101 tttggttaactgaaatttttcagagtggtacaaa 134  Q
    ||||||||||| ||||||||||||||||||||||    
T  42908712 tttggttaacttaaatttttcagagtggtacaaa 42908745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 17633404 - 17633242
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||| ||||||||||||||  ||||||||||||||||||||| || | || | ||||||| ||| ||        |||||||||||||||||||||    
T  17633404 aaatgcgcgtgaccactattttttaacttagttaaccaaataaattttggacaaattgtggtcatgcatctaaaaaa--tgtggtcacacagaccatata 17633307  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 165  Q
    ||||||||||| ||||||||| ||||||||||||   || ||||||||||||||||| |||||||    
T  17633306 tttggttaactaaaatttttcggagtggtacaaatgagtgtacacattaaaggtgtcaacctatc 17633242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 17633460 - 17633545
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 165  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||| ||| || |||||||    
T  17633460 tgtggtcacacagaccatatatttggttaactgaaatttttcaaagtggtacaaaggggtgtacatattaagggtatcaacctatc 17633545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 9809120 - 9809270
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaact-nnnnnnnntgtggtcacacagaccatat 99  Q
    |||||||| ||||||||||||||||| |||||||||||||||| || || ||||  | |||||||||||||         ||||||||||||||||||||    
T  9809120 aaatgcgcgtgaccactatttttccatttagttaaccaaataatttatggaaaaaaaatggtcacgcaactaaaaaaaaatgtggtcacacagaccatat 9809219  T
Q  100 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaa 150  Q
    | |||||||||| ||| |||  |||||||||||||  ||| ||||||||||    
T  9809220 acttggttaacttaaaatttctagagtggtacaaataggtttacacattaa 9809270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 9810806 - 9810957
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactag--tggtcacgcaactnnnnnnnntgtggtcacacagaccata 98  Q
    ||||| || ||||| ||||||||||| |||||||||||||||| || |||||||  |   |||||||||||||        |||||||||||||||||||    
T  9810806 aaatgtgcgtgacctctatttttccatttagttaaccaaataatttatgaaaaaaaaaattggtcacgcaactaaaaaaaatgtggtcacacagaccata 9810905  T
Q  99 tatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaa 150  Q
    ||||||||||||| ||| |||  |||||||||||||  ||| ||||||||||    
T  9810906 tatttggttaacttaaaatttctagagtggtacaaataggtttacacattaa 9810957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 24669297 - 24669363
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacaca 146  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||||    
T  24669297 tgtggtcacacagaccatatatttgattaacttaaatttttcagagtggtacaaaggggtgtacaca 24669363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 19596770 - 19596691
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtcta 159  Q
    ||||||||| | ||||||||||||||| ||| || ||||||||||||||||||||| ||| |||||||||||| ||||||    
T  19596770 tgtggtcacgctgaccatatatttggtcaacagagatttttcagagtggtacaaaggggtgtacacattaaagatgtcta 19596691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33179822 - 33179758
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcac 65  Q
    |||||||  |||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||    
T  33179822 aaatgcgtgtgaccactatttttccacttagttaatcaaataaattctaaaaaagtagtggtcac 33179758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 16583642 - 16583712
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaact 71  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||| ||  ||| |||| |||||||||||    
T  16583642 aaatgcgcgtgaccactatttttccacttaattaaccaaataaattatggtaaaatagtagtcacgcaact 16583712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 8740854 - 8740692
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagt---ggtcacgcaactnnnnnnnntgtggtcacacagaccat 97  Q
    |||||||| ||||||||||||||| ||||||||||| ||||||||| || |||| ||||   |||||| |||||        |||||||||| | |||||    
T  8740854 aaatgcgcgtgaccactatttttctacttagttaactaaataaattatggaaaagtagtagtggtcac-caactaaaaaaa-tgtggtcacataaaccat 8740757  T
Q  98 atatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||| ||||||  |||||||||||||||| ||||| |||    ||||| ||||||||||||||||||    
T  8740756 atatttgattaacttgaatttttcagagtggtgcaaaggggt----acatt-aaggtgtctacctatcat 8740692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 9809064 - 9808979
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 165  Q
    ||||||||| |||||||||||||| |||||||||| ||||||| || ||||||||  ||| |||| ||||| |||||| |||||||    
T  9809064 tgtggtcacgcagaccatatatttagttaactgaattttttcatagcggtacaaaagggtgtacatattaagggtgtcaacctatc 9808979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 16583586 - 16583505
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    ||||||||||   |||||||||||||||||||||||||||  |||||||||||||| | | ||| |||||| ||||||||||    
T  16583586 tgtggtcacatcaaccatatatttggttaactgaaattttcgagagtggtacaaagggatgtacgcattaagggtgtctacc 16583505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 19746941 - 19747021
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctac 160  Q
    |||||||| ||||||||| ||||| |||||||||||||||  ||| || ||||||| ||| ||||||||||| ||||||||    
T  19746941 tgtggtcaaacagaccatgtatttagttaactgaaattttcgagaatgatacaaaggggtgtacacattaaaagtgtctac 19747021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 19792865 - 19792785
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctac 160  Q
    |||||||| ||||||||| ||||| |||||||||||||||  ||| || ||||||| ||| ||||||||||| ||||||||    
T  19792865 tgtggtcaaacagaccatgtatttagttaactgaaattttcgagaatgatacaaaggggtgtacacattaaaagtgtctac 19792785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33249679 - 33249615
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcac 65  Q
    |||||||  |||||||||||||||||| ||||||| |||||||||| ||||||| ||||||||||    
T  33249679 aaatgcgtgtgaccactatttttccacctagttaatcaaataaattttgaaaaagtagtggtcac 33249615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 55666943 - 55667023
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctac 160  Q
    |||||||||||||||||||||||| |||||||||||||||  | ||||||||||||  || |||| ||||| |||| ||||    
T  55666943 tgtggtcacacagaccatatatttagttaactgaaattttcgaaagtggtacaaaggagtgtacatattaagggtggctac 55667023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 9810750 - 9810665
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 165  Q
    |||||| || || |||||||||||  ||||||||||||||||| |||||||||||  ||| |||| ||||| |||||| |||||||    
T  9810750 tgtggtaacgcaaaccatatatttaattaactgaaatttttcatagtggtacaaaagggtgtacatattaagggtgtcaacctatc 9810665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 25007625 - 25007701
Alignment:
Q  84 gtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    |||||| |||||||||||||||||||||||||||||  ||| |||||||||| ||| || |||||||  |||||||||    
T  25007625 gtcacatagaccatatatttggttaactgaaattttcgagaatggtacaaag-ggtgtatacattaagagtgtctacc 25007701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 8740682 - 8740600
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||||||||| | |||||||||||| ||||||  |||||||||||||||| ||||| |||    ||||| ||||||||||||||||||    
T  8740682 tgtggtcacataaaccatatatttgattaacttgaatttttcagagtggtgcaaaggggt----acatt-aaggtgtctacctatcat 8740600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2433757 - 2433810
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaa 54  Q
    |||||| | |||||||||||||| ||||| |||||||||||||||| |||||||    
T  2433757 aaatgcacgtgaccactattttttcactttgttaaccaaataaattatgaaaaa 2433810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 55666880 - 55666844
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaatt 46  Q
    |||||||||||||||||||||||||| ||||||||||    
T  55666880 tgaccactatttttccacttagttaagcaaataaatt 55666844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 24669239 - 24669274
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaat 45  Q
    |||||||||||||| |||||||||||||||||||||    
T  24669239 tgaccactattttttcacttagttaaccaaataaat 24669274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 15523185 - 15523144
Alignment:
Q  126 tggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||||||  || |||||||||||||||||||||||||||    
T  15523185 tggtacaaaggagtgtacacattaaaggtgtctacctatcat 15523144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 8740912 - 8740964
Alignment:
Q  82 tggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaa 134  Q
    |||||||||||| |||| ||||| |||||||||| |||| |||||| ||||||    
T  8740912 tggtcacacagatcatacatttgattaactgaaaattttgagagtgatacaaa 8740964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 35544538 - 35544578
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaattttt 120  Q
    |||| ||||||| |||||||||||| |||||||||||||||    
T  35544538 tgtgatcacacataccatatatttgattaactgaaattttt 35544578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 1400837 - 1400675
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||        |||||||||||| ||||||||    
T  1400837 aaatgcgcgtgatcactatttttccacttagttaaccaaataaattatggaaaaatagtggtcacgcaacttaaaaaa-tgtggtcacacataccatata 1400739  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctat 164  Q
    |||||||||||||||||||||||| |||||||||  ||| |||||||||| |||||||||||||    
T  1400738 tttggttaactgaaatttttcagattggtacaaaagggtgtacacattaagggtgtctacctat 1400675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 28527377 - 28527222
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaa 109  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||        |||||||||||||||||||||||||||||     
T  28527377 tgaccactatttttccaattagttaaccaaataaattctggaaaaatagtggtcacgcaactaaaaaaa-tgtggtcacacagaccatatatttggttag 28527279  T
Q  110 ctgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||||||||| |||||||||||| ||| |||| ||||| ||||||||||||||||    
T  28527278 ctgaaatttttcaaagtggtacaaaggggtgtaca-attaagggtgtctacctatcat 28527222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 33667372 - 33667493
Alignment:
Q  12 accactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaact 111  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||        |||| ||| ||| |||||||||||||||||||    
T  33667372 accactatttttccacttagttaaccaaatatattctgaaaaaatagtggtcacgcaact-taaaaaatgtgttcatacataccatatatttggttaact 33667470  T
Q  112 gaaatttttcagagtggtacaaa 134  Q
     ||||||||||||||||||||||    
T  33667471 aaaatttttcagagtggtacaaa 33667493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 30906114 - 30905949
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||| |||||||||||||||||||||||||| |||||||||| || |||  |||||||||| |||||        ||||||||||||||| |||||    
T  30906114 aaatgcgcgtgaccactatttttccacttagttaagcaaataaattatggaaacatagtggtcacacaactaaataaa-tgtggtcacacagacaatata 30906016  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    | ||||||||| ||| |||||||| || ||||||| | | ||||||||||  |||||||||||||||    
T  30906015 tctggttaactaaaaattttcagaatgttacaaagggatgtacacattaagagtgtctacctatcat 30905949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 41212430 - 41212507
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtc 157  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||    
T  41212430 tgtggtcacacagaccatatatttggttaacttaaatttttcagagtggtacaaaggggtatacatattaagggtgtc 41212507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 30906171 - 30906251
Alignment:
Q  81 gtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||| ||||    
T  30906171 gtggtcacgcagaccatatatttggttaactgaaatttttcagagtggtacaaaagggtgtacacattaaaggtgtgtacc 30906251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 43900574 - 43900642
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaa 69  Q
    |||||| | ||||||||||||||| | ||||||||||||||||||||||||||| ||| ||||||||||    
T  43900574 aaatgcacgtgaccactatttttctatttagttaaccaaataaattctgaaaaaataggggtcacgcaa 43900642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 43900518 - 43900439
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtcta 159  Q
    |||| ||||||||||||||||||| |||| ||||||||||  ||||||||||||| || | ||||||||||| |||||||    
T  43900518 tgtgatcacacagaccatatatttagttacctgaaattttcgagagtggtacaaaatgatctacacattaaaagtgtcta 43900439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 45305955 - 45305881
Alignment:
Q  82 tggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgt 156  Q
    |||||| |||||| ||||||||| ||||||||||||||| ||||||||||||||  || |||| ||||| |||||    
T  45305955 tggtcatacagactatatatttgattaactgaaattttttagagtggtacaaaggagtgtacatattaagggtgt 45305881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 45306012 - 45306065
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaa 54  Q
    ||||| || |||||||||||||||||||||||||||| |||||||||| |||||    
T  45306012 aaatgtgcgtgaccactatttttccacttagttaaccgaataaattctaaaaaa 45306065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 7378588 - 7378640
Alignment:
Q  82 tggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaa 134  Q
    |||||||||| ||||||||||| ||||||||||||||||| || |||| ||||    
T  7378588 tggtcacacaaaccatatattttgttaactgaaatttttctgaatggtgcaaa 7378640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 33667328 - 33667279
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggt 129  Q
    |||||||| ||| ||||||||||||||||| |||| ||||| ||||||||    
T  33667328 tgtggtcatacaaaccatatatttggttaattgaatttttttagagtggt 33667279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 34175180 - 34175209
Alignment:
Q  16 ctatttttccacttagttaaccaaataaat 45  Q
    ||||||||||||||||||||||||||||||    
T  34175180 ctatttttccacttagttaaccaaataaat 34175209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 34175129 - 34175049
Alignment:
Q  85 tcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 165  Q
    ||||||| | ||||||||| ||||| ||||| |||||||| |  ||||||| | | ||||||||||| ||||| |||||||    
T  34175129 tcacacaaatcatatatttagttaattgaaaattttcagaataatacaaagggatgtacacattaaaagtgtcaacctatc 34175049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 4290881 - 4291037
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||| ||||| ||| |||||||||||    
T  4290881 tgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactaaaaaaac-gtggtcatacagatcatttatttggttaa 4290979  T
Q  110 ctgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||||||||| ||| |||||||| | |  ||||||||||||| ||||||||||||    
T  4290980 ctgaaatttttcaaagtagtacaaagagattgacacattaaaggtatctacctatcat 4291037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 31303499 - 31303663
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||        |||||||||||| ||||||||    
T  31303499 aaatgtgcgtgaccactatttttccacttagttaaccaaataaattctggaaacatagtggtcacgcaact--aaaaaatgtggtcacacataccatata 31303596  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||| ||||||||||||||||  |||||||| |||  | | || |||||||||||||||||| |||||    
T  31303597 ttttgttaactgaaatttttttgagtggtataaaaggatgtagacattaaaggtgtctaccaatcat 31303663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 28805043 - 28804885
Alignment:
Q  11 gaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnn--tgtggtcacacagaccatatatttggtta 108  Q
    |||||||||||||||||||||||||||||||||||| || |||  |||||||||| |||||          |||||||||| ||||||||||||||||||    
T  28805043 gaccactatttttccacttagttaaccaaataaattatggaaatatagtggtcacacaactaaaaaaaaaatgtggtcacatagaccatatatttggtta 28804944  T
Q  109 actgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||||||||||  ||| |||||||||  ||| |||| ||||| ||||||||||||||||    
T  28804943 actgaaattttctagaatggtacaaaagggtgtacatattaagggtgtctacctatcat 28804885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 21548499 - 21548662
Alignment:
Q  2 aatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatat 101  Q
    ||||||| | |||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||        | || |||||||||||||||||    
T  21548499 aatgcgcgtaaccactgtttttccacttagttaaccaaataaattctggaaaaatagtggtcacgcaact-aaacaaatatgatcacacagaccatatat 21548597  T
Q  102 ttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    || |||||||||||||||| ||| |||||| |||   |||||||||||| | ||||||| ||||||    
T  21548598 ttagttaactgaaattttttagaatggtac-aaggaatatacacattaaggatgtctacttatcat 21548662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 21589669 - 21589823
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||  ||||||||||||||||||||| |||| ||||||| ||||| |||| ||||||||| ||||||        |||||||||||||||||||||    
T  21589669 aaatgcgtgtgaccactatttttccacttaattaatcaaataagttctggaaaaatagtggtcatgcaactaaaaaaa-tgtggtcacacagaccatata 21589767  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgt 156  Q
    ||||| |||||||||||||| ||||||||| |||  | | |||||||||| |||||    
T  21589768 tttggataactgaaattttttagagtggtataaacggatgtacacattaagggtgt 21589823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 5083855 - 5083691
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||  ||||||||||||||| |||| |||||| |||||||||||  |||| ||||||||||| ||||        |||||||||| ||||||||||    
T  5083855 aaatgcgggtgaccactatttttcaactttgttaacgaaataaattctagaaaaatagtggtcacgtaactaaaaaa--tgtggtcacaaagaccatata 5083758  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||| ||||||||||||||||| |||| || |||| |||||| | ||||| | ||||||||||||||    
T  5083757 tttgattaactgaaatttttcaaagtgatataaaggggtatatagattaaggatgtctacctatcat 5083691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 18312881 - 18313005
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaa 109  Q
    |||||||||||||||||||||||||||| ||||||||||  |||| ||||||||||||||||        | | | |||||| ||||||||||||||||     
T  18312881 tgaccactatttttccacttagttaacctaataaattcttgaaaaatagtggtcacgcaactaaaaaaatt-tagccacacaaaccatatatttggttag 18312979  T
Q  110 ctgaaatttttcagagtggtacaaag 135  Q
    ||||||||||||||||||||||||||    
T  18312980 ctgaaatttttcagagtggtacaaag 18313005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 28805142 - 28805223
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  28805142 tgtggtcacacataccatatatttggttaacttaaatttttcagagtgatacaaaggggtatacacattaagggtgtctacc 28805223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 18312817 - 18312736
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    |||||||||| |||||||||||||| |||| |||||||||  |||||||||||||| ||||||||| |||| ||||||||||    
T  18312817 tgtggtcacagagaccatatatttgattaattgaaattttcgagagtggtacaaaggggtatacacgttaagggtgtctacc 18312736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 15958351 - 15958251
Alignment:
Q  26 acttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaactgaaatttttcagag 125  Q
    ||||| ||||||||||||||||||||||| |||||||||| |||||        ||||||||||| |||||||||||||||||||| |||||||||| ||    
T  15958351 acttatttaaccaaataaattctgaaaaaatagtggtcacacaactaaaaaaa-tgtggtcacactgaccatatatttggttaacttaaatttttcaaag 15958253  T
Q  126 tg 127  Q
    ||    
T  15958252 tg 15958251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 20556812 - 20556948
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctg---aaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccat 97  Q
    |||| ||| |||||| |||||||||||||||||||||||||||||||||   ||||| |||||||||| ||||         |||||||| |||||| ||    
T  20556812 aaatacgcgtgaccaatatttttccacttagttaaccaaataaattctgaaaaaaaaatagtggtcactcaac-caaaaaaatgtggtcaaacagactat 20556910  T
Q  98 atatttggttaactgaaatttttcagagtggtacaaag 135  Q
    |||||| ||||||||||| |||||| |||| |||||||    
T  20556911 atatttagttaactgaaaattttcaaagtgatacaaag 20556948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 32964875 - 32964962
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||||||||||||||||||||| | ||||||| |||||||| |||||| ||||||  ||| || ||||||||||||||||| ||||||    
T  32964875 tgtggtcacacagaccatatatatagttaacttaaattttttagagtgatacaaaagggtgtatacattaaaggtgtctacatatcat 32964962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 5174912 - 5174978
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgc 67  Q
    ||||| || |||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||    
T  5174912 aaatgtgcgtgaccactatttttacacttagttaatcaaataaattctgaaaaattagtggtcacgc 5174978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 22033186 - 22033239
Alignment:
Q  82 tggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaag 135  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  22033186 tggtcacacagaccatatatttggttaactaaaatttttcagaatggtacaaag 22033239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 31303443 - 31303362
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    ||||||||| |||||||| ||||||||| ||||||||||||||||||| ||||||  | | |||||||||| ||||||||||    
T  31303443 tgtggtcacgcagaccatgtatttggttgactgaaatttttcagagtgatacaaatggatgtacacattaagggtgtctacc 31303362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 15958433 - 15958485
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtaca 132  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  15958433 tgtggtcacacagaccatatatttagttaactgaaattttacagagtggtaca 15958485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 22740706 - 22740654
Alignment:
Q  17 tatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaa 69  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  22740706 tatttttccacttagttaaccaaataaattctgaaaaaatagtagtcacgcaa 22740654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 20556754 - 20556675
Alignment:
Q  82 tggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||   |||||| | |||||||||||| ||||||||||    
T  20556754 tggtcacaccgaccatatatttggttaactgaaattttcgagagtaacacaaagagatatacacattaagggtgtctacc 20556675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 22740146 - 22740059
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||||||||||||||||||||| |||||| |||| |||||||||| |||| || ||| ||||||||||  ||||| | |||||||    
T  22740146 tgtggtcacacagaccatatatttgattaacttaaatatttcagagtgatacatagaggtgtacacattaagagtgtcaatctatcat 22740059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 22033050 - 22032995
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaag 135  Q
    |||||||||||| ||||||||||||||||||| |||||||  ||||||||||||||    
T  22033050 tgtggtcacacataccatatatttggttaacttaaattttaaagagtggtacaaag 22032995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27523550 - 27523497
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaa 54  Q
    ||||| || |||| |||||||||||||||| |||||||||||||||||||||||    
T  27523550 aaatgtgcttgactactatttttccacttaattaaccaaataaattctgaaaaa 27523497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 21548440 - 21548362
Alignment:
Q  82 tggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    |||||||||| ||||||| |||| ||||||||||||||  ||||||||||||||  || || | ||||||||||||||||    
T  21548440 tggtcacacataccatat-tttgattaactgaaattttcaagagtggtacaaagaagtgtatatattaaaggtgtctacc 21548362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 26240190 - 26240271
Alignment:
Q  83 ggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||||||||  ||||||| ||||||| |||||||| ||| ||||||||||  ||||||||||| |||||||  |||||||||    
T  26240190 ggtcacacagac--tatatttagttaacttaaattttttagaatggtacaaaggagtatacacatt-aaggtgtgaacctatcat 26240271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 38606891 - 38606726
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||| ||        | |||||||||| ||||||||    
T  38606891 aaatgcgtgtgaccactatttttccacttagttaaccaaataaattctggaaacatagtggtcacgcagctaaaaaaa-tatggtcacacataccatata 38606793  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||| ||||||||||||||||||||||||||||||| ||| || | ||||| | ||||||||||||||    
T  38606792 tttagttaactgaaatttttcagagtggtacaaaggggtctaaagattaaggatgtctacctatcat 38606726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 15714749 - 15714601
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaa 109  Q
    |||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||        |||||||||| | | ||||||||| | |||    
T  15714749 tgaccactatttttccacttagttaaccaaataaatttcgaaaaaatagtggtcacgcaact-aacaaaatgtggtcacataaatcatatatttagctaa 15714651  T
Q  110 ctgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtcta 159  Q
    |||||||||||||||||||||||||   || |||| ||||||||||||||    
T  15714650 ctgaaatttttcagagtggtacaaaaatgtgtacatattaaaggtgtcta 15714601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 5573826 - 5573991
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagac-catat 99  Q
    |||||| | ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |        |||||||||| ||||  ||||    
T  5573826 aaatgcacgtgaccactatttttccacttagttaaccaaataaattttgaaaaa-tagtggtcacgcaa-ttaaaaaaatgtggtcacaaagacatatat 5573923  T
Q  100 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||| |||||||||||| ||| |||||||||||||   || ||||||||||||| |||||||||||||    
T  5573924 atttagttaactgaaatcttttagagtggtacaaaagagtgtacacattaaaggagtctacctatcat 5573991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 5322025 - 5321955
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaact 71  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  5322025 aaatgcgcgtgaccactatttttccacttagttaaccaaataaattctaaaaaaatagtggtcacgcaact 5321955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 24576180 - 24576260
Alignment:
Q  81 gtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    ||||||||||||||||||||||||||||| |||||||||  |||||||||||||| ||| |||||||||  ||||||||||    
T  24576180 gtggtcacacagaccatatatttggttaattgaaattttcgagagtggtacaaaggggtgtacacattacgggtgtctacc 24576260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 26493400 - 26493272
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||| |||| |||||||||||| |||||||| |||||||||||||||||| || ||||| |||||||        |||||||||| ||||||||||    
T  26493400 aaatgcgcgtgacaactatttttccatttagttaatcaaataaattctgaaaaattaatggtcgcgcaact-aaaacaatgtggtcacatagaccatata 26493302  T
Q  101 tttggttaactgaaatttttcagagtggta 130  Q
    |||| |||| | |||||||| | |||||||    
T  26493301 tttgattaagtaaaattttttaaagtggta 26493272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 24575961 - 24575821
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaa 109  Q
    |||||||||||||| |||||| |||||||||||||||||| |||| |||||||||  |||||        | ||||| ||||||||||||||||||||||    
T  24575961 tgaccactattttttcacttatttaaccaaataaattctggaaaaatagtggtcagacaact-aaaataatatggtcgcacagaccatatatttggttaa 24575863  T
Q  110 ctgaaatttttcagagtggtacaaagtggtatacacattaaag 152  Q
    | |||| |||| | ||||||| |||| ||| |||||| |||||    
T  24575862 ccgaaactttttaaagtggta-aaaggggtgtacacaataaag 24575821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 31596785 - 31596704
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    |||||||||||| |||||||||||| ||||||| ||||||||| |||||||||||| ||| |||| |||||  |||||||||    
T  31596785 tgtggtcacacataccatatatttgattaactgtaatttttcaaagtggtacaaagaggtgtacatattaagagtgtctacc 31596704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 1251530 - 1251470
Alignment:
Q  11 gaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaact 71  Q
    |||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||    
T  1251530 gaccactattttcccacttagttaaccaaataaattatggaaaaatagtggtcacgcaact 1251470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 1240964 - 1240894
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaact 71  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||| || |||| |||||||||| |||||    
T  1240964 aaatgtgcgtgaccactattttcccacttagttaaccaaataaattatggaaaaatagtggtcacacaact 1240894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 5322081 - 5322136
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaag 135  Q
    |||| ||||||||||||||||||||||||| |||||||||| |||||| |||||||    
T  5322081 tgtgatcacacagaccatatatttggttaattgaaatttttgagagtgatacaaag 5322136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 15233197 - 15233134
Alignment:
Q  91 agaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggt 154  Q
    |||||||||||||| ||||||||||||||||||| |||||| ||| | | ||||||||||||||    
T  15233197 agaccatatatttgattaactgaaatttttcagattggtacgaagagatgtacacattaaaggt 15233134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 29367118 - 29367076
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataa 43  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  29367118 aaatgcgcgtgaccactatttttccacttagttaaccaaataa 29367076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 31273681 - 31273751
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaa 150  Q
    ||||| |||| |||||||||||||| |||| |||||||||  |||||||||||||  ||||||||||||||    
T  31273681 tgtggccacatagaccatatatttgattaattgaaattttcgagagtggtacaaaaaggtatacacattaa 31273751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 1251595 - 1251676
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    ||||||| |||| | ||||||||| |||||||||||||||  |||||||||||||  ||| |||||||||| | ||||||||    
T  1251595 tgtggtctcacaaatcatatatttagttaactgaaattttcgagagtggtacaaatgggtgtacacattaaggatgtctacc 1251676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 24538034 - 24537875
Alignment:
Q  12 accactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaac-tnnnnnnnntgtggtcacacagaccatatatttggttaac 110  Q
    |||||||||||||||  | |||||||||||||||| || |||| |||||||||| |||  |        ||||||||| || ||||||||||| |||||     
T  24538034 accactatttttccatatggttaaccaaataaattttggaaaattagtggtcacacaaaattaaaaaaatgtggtcactcataccatatatttagttaat 24537935  T
Q  111 tgaaat---ttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||   |||| ||||||||||||| |||| || ||||||| ||||| || |||||||    
T  24537934 tgaaatatttttttagagtggtacaaattggtgtatacattaagggtgtatatctatcat 24537875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 33286207 - 33286130
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtc 157  Q
    ||||||||| |||||||||||||||||||| | || ||||| |||| ||||||||  ||| |||||||||| ||||||    
T  33286207 tgtggtcacgcagaccatatatttggttaattaaatttttttagaggggtacaaatgggtgtacacattaagggtgtc 33286130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 38606947 - 38607028
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    ||||||||| || ||||||||| | |||||||||||||||  ||||| |||||||| ||| |||||||||| | ||||||||    
T  38606947 tgtggtcacgcaaaccatatatgtagttaactgaaattttggagagttgtacaaaggggtgtacacattaaggatgtctacc 38607028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15233274 - 15233318
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaat 45  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||    
T  15233274 aaatgcgcatgaccactattttttcacttaattaaccaaataaat 15233318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 28700117 - 28700045
Alignment:
Q  93 accatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 165  Q
    ||||||||||| |||||||||||||||| ||| || |||||| || | |||||||||||| |||| |||||||    
T  28700117 accatatatttagttaactgaaattttttagaatgatacaaaatgatgtacacattaaagatgtcaacctatc 28700045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 6809850 - 6809981
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaattctga-aaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggtta 108  Q
    ||||||||||||||||| ||| ||||||||||||||| ||| |||| ||||  |||| |||||        |||||||||||| || ||||||||| |||    
T  6809850 tgaccactatttttccatttaattaaccaaataaattatgagaaaaatagttatcacacaactataaaaa-tgtggtcacacatactatatatttgatta 6809948  T
Q  109 actgaaatttttcagagtggtacaaagtggtat 141  Q
    ||||||||||| |||| | ||| |||| |||||    
T  6809949 actgaaattttccagaatagtagaaagaggtat 6809981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 15233341 - 15233396
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaag 135  Q
    |||||||||||| || ||||||||  |||||| |||||||||||||||||||||||    
T  15233341 tgtggtcacacaaactatatatttaattaactaaaatttttcagagtggtacaaag 15233396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 26914745 - 26914631
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaa 109  Q
    |||||| |||||||||||| | |||||||||||||||||  |||| ||||||||||| ||||        |||| ||||||| | ||||||||| ||||     
T  26914745 tgaccattatttttccactcaattaaccaaataaattcttgaaaaatagtggtcacgtaact--aaaaaatgtgatcacacaaatcatatatttagttag 26914648  T
Q  110 ctgaaatttttcagagt 126  Q
    || ||||||||||||||    
T  26914647 cttaaatttttcagagt 26914631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 31596853 - 31596911
Alignment:
Q  14 cactatttttccacttagttaaccaaataaattct-gaaaaactagtggtcacgcaact 71  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||| ||||||| |||||    
T  31596853 cactatttttccacttaattaaccaaataaattatggaaaaactaatggtcacacaact 31596911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 31273610 - 31273555
Alignment:
Q  16 ctatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaact 71  Q
    |||||||| |||| ||||||||||||||||||| ||||| | ||| ||||||||||    
T  31273610 ctattttttcactaagttaaccaaataaattcttaaaaaatggtgatcacgcaact 31273555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 10304763 - 10304631
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||  ||||||||||||| |        |||||||||||||||||||||    
T  10304763 aaatgcgcgtgaccactattttttcacttagttaaccaaataaattctggaaaaaaagtggtcacgcaattaaaaag--tgtggtcacacagaccatata 10304666  T
Q  101 tttggttaactgaaatttttcagagtggtacaaag 135  Q
    |||||||||||||||||||| ||||||||||||||    
T  10304665 tttggttaactgaaattttttagagtggtacaaag 10304631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 10 - 165
Target Start/End: Complemental strand, 2430661 - 2430507
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||          |||||||||||| ||||||||| |||||    
T  2430661 tgaccactatttttccacttagttaaccaaataaattctgaaaaaatagtggtcatgcaactaaaaaaaa--tggtcacacagatcatatatttagttaa 2430564  T
Q  110 ctgaaa-tttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 165  Q
    |||||| ||||||||| ||||||||||   | |||||||||| ||||||||||||||    
T  2430563 ctgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 2430507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 138768 - 138645
Alignment:
Q  11 gaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaac 110  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||        ||||| |||||||||||||||||||||||||    
T  138768 gaccactatttttccacttagtcaaccaaataaattctgaaaaaatagtggtcacgcaact-aagaaaatgtggccacacagaccatatatttggttaac 138670  T
Q  111 tgaaatttttcagagtggtacaaag 135  Q
    | || ||||| ||||||||| ||||    
T  138669 taaatttttttagagtggtataaag 138645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 146789 - 146666
Alignment:
Q  11 gaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaac 110  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||        ||||| |||||||||||||||||||||||||    
T  146789 gaccactatttttccacttagtcaaccaaataaattctgaaaaaatagtggtcacgcaact-aagaaaatgtggccacacagaccatatatttggttaac 146691  T
Q  111 tgaaatttttcagagtggtacaaag 135  Q
    | || ||||| ||||||||| ||||    
T  146690 taaatttttttagagtggtataaag 146666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 2835008 - 2835173
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||| ||| |||||| ||||||||||||||| |||| ||||||||| || |||| ||||||| || |||||        ||||||||||||||   ||||    
T  2835008 aaatacgcgtgaccattatttttccacttagctaactaaataaattatggaaaaatagtggttacacaactaaaaaaa-tgtggtcacacagatggtata 2835106  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||||||| |||||||||||||||||||||| || |||||||||||| | ||||||||||||||    
T  2835107 tttggttaacttaaatttttcagagtggtacaaattgatatacacattaaggctgtctacctatcat 2835173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 39 - 164
Target Start/End: Complemental strand, 30056152 - 30056027
Alignment:
Q  39 aataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtgg 138  Q
    |||||||||||||||| |||||||||||||||         |||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| ||    
T  30056152 aataaattctgaaaaaatagtggtcacgcaacaaaaaaaaatgtggtcacatagaccatatatttggttaactgaaattttttagagttgtacaaagggg 30056053  T
Q  139 tatacacattaaaggtgtctacctat 164  Q
      || |||||||||||||||||||||    
T  30056052 agtatacattaaaggtgtctacctat 30056027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 9068452 - 9068599
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||| |||  |||||||||||||||||| ||| |||||| ||||| |||| ||||||||||||||||        |||||||||||| ||||||||    
T  9068452 aaatgcgcgtgattactatttttccacttagtaaac-aaataagttctggaaaaatagtggtcacgcaactaaaaaaa-tgtggtcacacataccatata 9068549  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaa 150  Q
    |||| |||||| ||||||||||||||||||||||  ||| ||||||||||    
T  9068550 tttgattaactaaaatttttcagagtggtacaaaagggtgtacacattaa 9068599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 22608406 - 22608571
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccat--- 97  Q
    ||||| |||||||||||||||||  | |||||||| ||||||| |||||||||| ||||||||||||||||        | |||||||||||| |||       
T  22608406 aaatgtgcatgaccactattttttgaattagttaatcaaataatttctgaaaaattagtggtcacgcaact-aaaacaatatggtcacacagatcatata 22608504  T
Q  98 atatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctat 164  Q
    |||||||||||||||||| |||||| | || ||||||| ||| |||| |||||| ||||||||||||    
T  22608505 atatttggttaactgaaaattttcaaaatgatacaaaggggtgtacatattaaaagtgtctacctat 22608571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 24386335 - 24386420
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 165  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| | | |||||||||| |||||| |||||||    
T  24386335 tgtggtcacacagaccatatatttggttaacttaaatttttcagcgtggtataaagggatgtacacattaagggtgtcaacctatc 24386420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 3222486 - 3222610
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaattct-gaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggtta 108  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||| ||||        ||||||||||||||||||||||||| |||    
T  3222486 tgaccactatttttccacttagttaaccaaataaattctggaaaatatagtggtcacgtaact-agaaaaatgtggtcacacagaccatatatttgatta 3222584  T
Q  109 actgaaatttttcagagtggtacaaa 134  Q
    ||| |  ||||| |||||| ||||||    
T  3222585 actaatcttttttagagtgatacaaa 3222610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 23595202 - 23595345
Alignment:
Q  13 ccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaactg 112  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||  ||||         ||||||||||||||| |||||||||||||| ||    
T  23595202 ccactatttttccacttagttaacaaaataaattctgaaaaattagtggtca--caac--aaaaaaatgtggtcacacagactatatatttggttaattg 23595297  T
Q  113 aaatttttcagagtggtacaaagtggtatacacattaaaggtgtctac 160  Q
    |||||||| |||||  ||||||  ||| |||| ||||| | |||||||    
T  23595298 aaattttttagagtaatacaaaagggtgtacatattaaggttgtctac 23595345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 10 - 166
Target Start/End: Complemental strand, 3620814 - 3620659
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaa 109  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| |        ||| |||||||| |||||||||||| ||||    
T  3620814 tgaccactattttttcacttagttaaccaaataaattctgaaaaaatagtggtcgcgcaagt-aaagaattgtagtcacacaaaccatatatttgtttaa 3620716  T
Q  110 ctgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatca 166  Q
    || |||   |||||||||||| |||  | | ||||||||||   |||||||||||||    
T  3620715 ctaaaaaaattcagagtggtataaatggatgtacacattaagaatgtctacctatca 3620659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 22608347 - 22608281
Alignment:
Q  84 gtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaa 150  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||||||    
T  22608347 gtcacacagaccatatatttggttaactaaaatttttgagagtggtacaaaggggtgtacacattaa 22608281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 11108155 - 11108102
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaa 133  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  11108155 tgtggtcacacagaccatatatttggttaattgaaatttttcagagtagtacaa 11108102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 20084666 - 20084581
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 165  Q
    |||||||||||| ||||||||||||||||||| |||||||||||  ||||| |||| | | |||||||||| |||||| |||||||    
T  20084666 tgtggtcacacataccatatatttggttaacttaaatttttcagcatggtataaagggatgtacacattaagggtgtcaacctatc 20084581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33815079 - 33815026
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaa 54  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  33815079 aaatgcgcgtgaccaccatttttccacttagttaaccaaataaattctgaaaaa 33815026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 23595142 - 23595066
Alignment:
Q  82 tggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtct 158  Q
    |||||||||||||||||||||| ||||||| |||||||  |||||| ||||||  ||| ||||||||||||||||||    
T  23595142 tggtcacacagaccatatatttagttaacttaaattttcgagagtgatacaaaagggtgtacacattaaaggtgtct 23595066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 7915717 - 7915767
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggta 130  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  7915717 tgtggtcacacagacgatatatttgattaactgaaatttttcagagtggta 7915767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 7915683 - 7915606
Alignment:
Q  85 tcacacagaccatatatttggttaactgaaattttt-cagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    ||||||| |||| ||||||| ||||||||||||||| ||||||| ||||||  ||| |||||||||||||||||||||    
T  7915683 tcacacataccacatatttgattaactgaaattttttcagagtgatacaaaagggtgtacacattaaaggtgtctacc 7915606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 138813 - 138892
Alignment:
Q  81 gtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    ||||||||||| || ||||||||||||||||||| ||||| ||||| |||||||| ||| ||||||| || ||||||||||    
T  138813 gtggtcacacacac-atatatttggttaactgaatttttttagagtagtacaaaggggtgtacacatcaatggtgtctacc 138892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 146834 - 146913
Alignment:
Q  81 gtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    ||||||||||| || ||||||||||||||||||| ||||| ||||| |||||||| ||| ||||||| || ||||||||||    
T  146834 gtggtcacacacac-atatatttggttaactgaatttttttagagtagtacaaaggggtgtacacatcaatggtgtctacc 146913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 167
Target Start/End: Original strand, 18980401 - 18980487
Alignment:
Q  81 gtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||||| ||||||||||||| ||||||| | ||||| ||||||||||||||  ||| | ||||||||  ||||| |||||||||    
T  18980401 gtggtcacatagaccatatatttagttaacttagattttgcagagtggtacaaaaaggtgtgcacattaagagtgtcaacctatcat 18980487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 7706878 - 7706773
Alignment:
Q  51 aaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaa 150  Q
    |||| ||||||||||||||||        |||||||||||| ||||||||||   |||||| |||||||||||| |||||||||  | | ||||||||||    
T  7706878 aaaaatagtggtcacgcaactgaaaaaaatgtggtcacacaaaccatatattatattaactaaaatttttcagaatggtacaaaaggatgtacacattaa 7706779  T
Q  151 aggtgt 156  Q
    ||||||    
T  7706778 aggtgt 7706773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 7706865 - 7706926
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaact 71  Q
    |||||||||||||||||||||  ||||||||||| ||||| |||| |||| |||||||||||    
T  7706865 tgaccactatttttccacttaagtaaccaaataagttctggaaaaatagttgtcacgcaact 7706926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 3222421 - 3222343
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtcta 159  Q
    |||||||||| | ||||||||||||||||  |||||||||| |||||  ||||||| ||| |||||||||| ||||||||    
T  3222421 tgtggtcacagacaccatatatttggttatttgaaatttttaagagtaatacaaag-ggtgtacacattaagggtgtcta 3222343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 167
Target Start/End: Original strand, 20084729 - 20084815
Alignment:
Q  81 gtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||||| ||||||||||||| ||||||| | ||||| |||| |||||||||   || ||||||||||  ||||| |||||||||    
T  20084729 gtggtcacatagaccatatatttagttaacttagattttgcagaatggtacaaaaaagtctacacattaagagtgtcaacctatcat 20084815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 11108195 - 11108275
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctac 160  Q
    |||||||||||| | ||||||||||||||| |||| ||||| ||| |  ||||||  | |||||||||||| |||||||||    
T  11108195 tgtggtcacacaaatcatatatttggttaattgaatttttttagaataatacaaaaagatatacacattaagggtgtctac 11108275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 13767189 - 13767125
Alignment:
Q  84 gtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacatt 148  Q
    |||| ||||||||||||||||||||||| |||||||  |||||| |||||||  || ||||||||    
T  13767189 gtcagacagaccatatatttggttaacttaaattttctagagtgatacaaaggagtgtacacatt 13767125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 9068383 - 9068328
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaag 135  Q
    |||||||| |||||||||||| |||||||||||| |||||  ||||||||| ||||    
T  9068383 tgtggtcatacagaccatatacttggttaactgatattttcgagagtggtataaag 9068328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9474675 - 9474718
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaa 44  Q
    |||||||  |||||||||||||| ||||||||||||||||||||    
T  9474675 aaatgcgtgtgaccactattttttcacttagttaaccaaataaa 9474718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 165
Target Start/End: Complemental strand, 24386272 - 24386188
Alignment:
Q  81 gtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 165  Q
    ||||||||| ||||||||||||| |||||||   ||||  |||||||||| |||  ||| ||||||||||  ||||| |||||||    
T  24386272 gtggtcacatagaccatatatttagttaacttggatttggcagagtggtataaaaaggtgtacacattaagagtgtcaacctatc 24386188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 15221619 - 15221775
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaa 109  Q
    |||||||| |||||||||||| ||||| ||||||||||||||||| |||||||||| ||| |        |||||||||||||||||||||||| |||||    
T  15221619 tgaccactctttttccacttaattaactaaataaattctgaaaaaatagtggtcacacaa-ttaaaaaaatgtggtcacacagaccatatatttagttaa 15221717  T
Q  110 ctgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||||||||||| || |||||||  || |||||||||||||||||| ||||||||    
T  15221718 ctgaaatttttcagaatgatacaaaggagtgtacacattaaaggtgtctgcctatcat 15221775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 35922778 - 35922942
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||        | ||||| ||||||||||| |    
T  35922778 aaatgcgtatgaccactatttttccatttagttaaccaaataaattctgaaaaaatagtggtcatgcaact-taaaaaatatggtcccacagaccataaa 35922876  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||||||| |||||||||| |||| ||||||| ||| |||||||| ||| ||||||||||||||    
T  35922877 tttggttaacttaaatttttcaaagtgatacaaagcggtgtacacatt-aagatgtctacctatcat 35922942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 42034802 - 42034967
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||| | ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||        |||| | ||||| ||||||||    
T  42034802 aaatgcacgtgaccactatttttccacttagttaaccaaataaattttggaaaactagtggtcacgcaact-aaaaaaatgtgattacacataccatata 42034900  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||| | ||||||||||||| |||||||||||||| | | ||| |||||||| ||||||||||||||    
T  42034901 tttgatcaactgaaattttttagagtggtacaaagggatgtacgcattaaagatgtctacctatcat 42034967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 13312644 - 13312776
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||| || | |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||        |||||||||||| | ||||||    
T  13312644 aaatgcgcgtggcaactatttttccacttagttaaccaaataaattatggaaaaatagtggtcacgcaact-aaaaaaatgtggtcacacaaatcatata 13312742  T
Q  101 tttggttaactgaaatttttcagagtggtacaaa 134  Q
    | ||||||||||||||||||||||||||||||||    
T  13312743 tatggttaactgaaatttttcagagtggtacaaa 13312776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 33959032 - 33958879
Alignment:
Q  12 accactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaact 111  Q
    |||||||||||||||||||||| ||||||||||||||| |||| | ||||||| ||| ||        |||| | ||| ||||||||||||||||||| |    
T  33959032 accactatttttccacttagttgaccaaataaattctggaaaaattgtggtcatgcagctaaaaaaa-tgtgattacatagaccatatatttggttaagt 33958934  T
Q  112 gaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||||||||||||||||||||||| | |||||| ||||| ||||||||||||||||    
T  33958933 gaaatttttcagagtggtacaaag-gatatacatattaagggtgtctacctatcat 33958879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 22169503 - 22169636
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||| ||||||||||||||| || |||||||||||||||||| ||||||| || |||||||||||||        |||||||||||| | |||| |    
T  22169503 aaatgcgcgtgaccactatttttcaacgtagttaaccaaataaattttgaaaaaataatggtcacgcaact-aaaaaaatgtggtcacacatatcataaa 22169601  T
Q  101 tttggttaactgaaatttttcagagtggtacaaag 135  Q
    ||||||||||| ||| |||||||||||||||||||    
T  22169602 tttggttaactaaaaattttcagagtggtacaaag 22169636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 43262819 - 43262904
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 165  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||||||| ||||||||| ||||    
T  43262819 tgtggtcacacagaccatatatttggttaactgaaatttttcaaagtagtacaaaggggtgtacacattaagggtgtctacttatc 43262904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 35922698 - 35922617
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||| ||||||| | | ||||||||||  |||||||||    
T  35922698 tgtggtcacacataccatatatttgattaactgaaatttttcagagtgatacaaagggatgtacacattaagtgtgtctacc 35922617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 19621591 - 19621646
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaag 135  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  19621591 tgtggtcacacataccatatatttggttaactgaaatttttcagaatggtacaaag 19621646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 36169391 - 36169304
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||||||||||  ||||||||||||||||||| |||||||||| |||||||||||| |   ||||||||||  |||||||||||||||    
T  36169391 tgtggtcacacctaccatatatttggttaactaaaatttttcaaagtggtacaaagagaagtacacattaagagtgtctacctatcat 36169304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19621536 - 19621466
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaact 71  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||    
T  19621536 aaatgtgcgtgaccactatttttccacttagttaaccaaataaattctggaaaaatagtgattacgcaact 19621466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 31189566 - 31189488
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtct 158  Q
    |||||||||||| || ||||||||||||||||||||||||  ||||||||||||| || | |||| |||||||||||||    
T  31189566 tgtggtcacacatactatatatttggttaactgaaattttcgagagtggtacaaaatgttgtacatattaaaggtgtct 31189488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 38522031 - 38521961
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaact 71  Q
    |||||||| |||||||||||||| |||||||||||| |||||||||||  ||||||| |||||||||||||    
T  38522031 aaatgcgcgtgaccactatttttacacttagttaactaaataaattctagaaaactaatggtcacgcaact 38521961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 2477302 - 2477370
Alignment:
Q  3 atgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaact 71  Q
    |||||| || |||||||||||| |||||||||||||||||||||||| |||| |||||| |||||||||    
T  2477302 atgcgcgtggccactatttttcgacttagttaaccaaataaattctgtaaaaatagtggccacgcaact 2477370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 43461753 - 43461694
Alignment:
Q  12 accactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaact 71  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||    
T  43461753 accactatttttccacttagtaaaccaaataaattctgaaaaaatagttgtcacacaact 43461694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 16095587 - 16095519
Alignment:
Q  96 atatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctat 164  Q
    |||||||||||||| |||||||||  ||||||||| |||| ||| ||||||||||| ||||||||||||    
T  16095587 atatatttggttaattgaaattttcgagagtggtagaaaggggtgtacacattaaatgtgtctacctat 16095519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30704442 - 30704398
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaat 45  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  30704442 aaatgcgcgtgaccactatttttccacttagttaaccaaataaat 30704398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 43461830 - 43461904
Alignment:
Q  91 agaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatc 165  Q
    |||||||||||||| ||||||||||||||  | |||| ||||||| |||| |||||||||  |||||||||||||    
T  43461830 agaccatatatttgattaactgaaattttcaaaagtgctacaaaggggtacacacattaagagtgtctacctatc 43461904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43262749 - 43262708
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaata 42  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  43262749 aaatgcgcgtgaccactatttttccacttagttaaccaaata 43262708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 31189710 - 31189762
Alignment:
Q  93 accatatatttggttaactgaaatttttcagagtggtacaaagtggtatacac 145  Q
    |||||||||||||||||||||||||||| | |||||||||||| ||| |||||    
T  31189710 accatatatttggttaactgaaattttttaaagtggtacaaaggggtgtacac 31189762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 15221625 - 15221554
Alignment:
Q  81 gtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtg-gtatacacattaaa 151  Q
    ||||||||||| ||||||||||||||||||| |||||||  ||| |||||||||| | || |||||||||||    
T  15221625 gtggtcacacaaaccatatatttggttaactaaaattttcgagaatggtacaaagcgtgtgtacacattaaa 15221554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 30704364 - 30704321
Alignment:
Q  91 agaccatatatttggttaactgaaatttttcagagtggtacaaa 134  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  30704364 agaccatatatttgattaactgaaattttacagagtggtacaaa 30704321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 13312589 - 13312508
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    |||| ||||| ||||||||||||||||||| |||||||||  | | | |||||||  ||| |||||||||||||| ||||||    
T  13312589 tgtgttcacatagaccatatatttggttaattgaaattttcgaaaatagtacaaaagggtgtacacattaaaggtatctacc 13312508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30045894 - 30045940
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattc 47  Q
    |||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  30045894 aaatacgcgtgaccactatttttccatttaattaaccaaataaattc 30045940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 36169452 - 36169501
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggt 129  Q
    |||||||||||| |||||||||||| | | ||||||||||| ||||||||    
T  36169452 tgtggtcacacataccatatatttgatcagctgaaatttttgagagtggt 36169501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 272 - 106
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||||||||||||||||||||||||| ||| |||||||| || ||||||| ||||||||||||||||        |||| |||||||| |||||||    
T  272 aaatgcgcatgaccactatttttccacttacttatccaaataatttttgaaaaattagtggtcacgcaact-aaaacaatgtgatcacacagtccatata 174  T
Q  101 tttggttaactgaaatttttc-agagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||||||||||||||||| |||||||||||||    | |||||||||||| ||||||||| ||||    
T  173 tttggttaactgaaatttttcaagagtggtacaaaaaaatgtacacattaaagatgtctacctgtcat 106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 328 - 409
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| | | |||| ||||| ||||| ||||    
T  328 tgtggccacacagaccatatatttggttaactgaaaattttcagagtggtacaaagagatgtacaaattaagggtgtttacc 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 5341930 - 5342087
Alignment:
Q  9 atgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggtta 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||  || |||| || |||||        ||||||||||||||||||||||| | |||    
T  5341930 atgaccactatttttccacttagttaaccaaataaattctgaaaacataatggttacacaactaaaaaaa-tgtggtcacacagaccatatattcgatta 5342028  T
Q  109 actgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||||||||||||||||| |||||||| ||| ||| |||||  | ||||||||||||||    
T  5342029 actgaaatttttcagagtcgtacaaaggggtgtacgcattagggatgtctacctatcat 5342087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 19280244 - 19280408
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| | |||        ||| |||||||||||||||||    
T  19280244 aaattcgcgtgaccactatttt-ccacttagttaaccaaataaattttgaaaaattagtggtcacaccacttaaaaaa-tgttgtcacacagaccatata 19280341  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||| |||||| ||| ||||||||||||||||||  ||| |||||||||| ||||||||||||||||    
T  19280342 tttgattaactaaaaattttcagagtggtacaaacgggtgtacacattaagggtgtctacctatcat 19280408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 26308703 - 26308546
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| |||||        |||||||||||| ||||||||    
T  26308703 aaatgcgcgtgaccactatttttccacttacttaaccaaataaattctggaaaattagtggtcacacaact-aaaacaatgtggtcacacaaaccatata 26308605  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtcta 159  Q
    ||| ||||||||| |||||||| |||| ||||||   || |||| ||||||||||||||    
T  26308604 tttagttaactgatatttttcaaagtgatacaaaaaagtgtacatattaaaggtgtcta 26308546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 3823699 - 3823862
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||  |||||||| |||||||||||||||||||||||||||| || |||| ||||||||||||||||         |||||||||||||| |||||    
T  3823699 aaatgcgtgtgaccact-tttttccacttagttaaccaaataaattatggaaaaatagtggtcacgcaactaaaaaac--gtggtcacacagacaatata 3823795  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||||||||||| |||||||| |||| |||||||  |||  ||| ||||| ||||||||||||||||    
T  3823796 tttggttaactggaatttttctgagtagtacaaacgggtgaacatattaagggtgtctacctatcat 3823862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 31545662 - 31545824
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||||||| |||| |||||||||| |||||        |||||||||| ||||||||||    
T  31545662 aaatgtgcatgaccactatttttctacttagttaacaaaataaattctggaaaaatagtggtcacacaact-aaaaaaatgtggtcacatagaccatata 31545760  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctat 164  Q
    || ||||| |||||||||||||||||| ||||||  | | |||| ||||||  |||||||||||    
T  31545761 ttaggttacctgaaatttttcagagtgatacaaaaagatgtacatattaaaattgtctacctat 31545824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 3786009 - 3786170
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||| |||||||| |||||||||||||||||||||||||||| || |||| ||||||||||||||||         |||||||||||||| |||||    
T  3786009 aaatgcgcgtgaccact-tttttccacttagttaaccaaataaattatggaaaaatagtggtcacgcaactaaaaaac--gtggtcacacagacaatata 3786105  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||||||||||| |||||||| |||||||  |||  |||  ||| ||||| ||||||||||||||||    
T  3786106 tttggttaactggaatttttctgagtggt--aaacgggtgaacatattaagggtgtctacctatcat 3786170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 42638019 - 42637860
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||| | ||||||||||||| ||||||||||||||||||||||||||||| |||||||||  |||||        || ||||||||| |  |||||    
T  42638019 aaatgcgcgtaaccactatttttcaacttagttaaccaaataaattctgaaaaaatagtggtcagacaact--aaaatatgcggtcacacaaataatata 42637922  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctat 164  Q
    ||||||||| |||||||||||  |||||||||||| | | | |||||||| |||||||||||||    
T  42637921 tttggttaattgaaatttttc--agtggtacaaagggatgtgcacattaagggtgtctacctat 42637860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 3823641 - 3823561
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctac 160  Q
    ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||| ||| |||||||||| |||||||||    
T  3823641 tgtggtcacacagaccatataattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaagggtgtctac 3823561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 3785952 - 3785871
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    ||||||||||||||||||| | ||||||||||||||||||  |||||||||||||| ||| |||||||||| ||||||||||    
T  3785952 tgtggtcacacagaccataaaattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaagggtgtctacc 3785871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 11501316 - 11501481
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    ||||| || ||||||||||||||||| ||||||||||||||||||| | ||||| ||||| | ||||||||        || ||||||||||| ||||||    
T  11501316 aaatgtgcgtgaccactatttttccaattagttaaccaaataaattttaaaaaaatagtgctaacgcaact-aaaaaactgcggtcacacagatcatata 11501414  T
Q  101 tttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||||||| |||||||  | ||||||| ||||  || ||||||||||  ||||| |||||||||    
T  11501415 tttggttaacttaaattttctaaagtggtataaaggagtgtacacattaagtgtgtcaacctatcat 11501481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 22432388 - 22432524
Alignment:
Q  13 ccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaactg 112  Q
    ||||||||||||||| ||||| |||||||||||| ||||||| ||||||||| ||||||        ||| ||||||||||||||||||||| || |||     
T  22432388 ccactatttttccacatagttgaccaaataaattatgaaaaaatagtggtcatgcaact-aaaaaaatgtagtcacacagaccatatatttgatttactc 22432486  T
Q  113 aaatttttcagagtggtacaaagtggtatacacattaa 150  Q
    |||||||||| |||| ||||||  ||| ||||||||||    
T  22432487 aaatttttcaaagtgctacaaaagggtgtacacattaa 22432524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 4169168 - 4169038
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    ||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| ||||||        || |||||| || ||||||      
T  4169168 aaatgtgcgtgaccactatttttccatttagttaaccaaataaattctgaaaaaatagtagtcatgcaact-gaaaaaatgaggtcacgcataccata-- 4169072  T
Q  101 tttggttaactgaaatttttcagagtggtacaaag 135  Q
     ||||||||||||||||||||||||| ||||||||    
T  4169071 -ttggttaactgaaatttttcagagtagtacaaag 4169038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 1705733 - 1705600
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    |||||||| |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||  |||||        | |  ||||||| ||||||||    
T  1705733 aaatgcgcgtgaccactatttttccccttagttaaccaaataatttctggaaaactagtggtcatacaact-aaaaaaatataatcacacaaaccatata 1705635  T
Q  101 tttggttaactgaaatttttcagagtggtacaaag 135  Q
    ||| || |||| |||||||||||||||||| ||||    
T  1705634 tttagtaaacttaaatttttcagagtggtagaaag 1705600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 9710850 - 9710918
Alignment:
Q  93 accatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| ||| ||||||    
T  9710850 accatatatttggttaactgaaatttttcagagtggtacaaaggggtgtacatattaagggtttctacc 9710918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 18733598 - 18733678
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctac 160  Q
    ||||||||| || ||||||||||| ||||||| |||||||||||| ||||| |||| ||| ||||||||||||||||||||    
T  18733598 tgtggtcacccataccatatatttagttaacttaaatttttcagaatggtataaaggggtgtacacattaaaggtgtctac 18733678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 27335379 - 27335292
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||||||||||| |||||||  |||||||||| ||| |||||||| |||||||||| ||| |||||||||||| ||| ||||||||||    
T  27335379 tgtggtcacacataccatattattggttaactcaaaattttcagaatggtacaaaggggtgtacacattaaagatgtttacctatcat 27335292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 39126222 - 39126360
Alignment:
Q  14 cactatttttccacttagttaaccaaataaattctgaaaaac--tagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaact 111  Q
    ||||||||||||||||||||||||||||||||| | |||||   |||| |||||||||||        ||| |||||||||| |||||||||||||||||    
T  39126222 cactatttttccacttagttaaccaaataaattttaaaaaaaaatagtagtcacgcaactaaaaaaa-tgttgtcacacagatcatatatttggttaact 39126320  T
Q  112 gaaatttttcagagtggtacaaagtggtatacacattaaa 151  Q
     |||||||||||| |  |||||||  || |||||||||||    
T  39126321 taaatttttcagaataatacaaagaagtgtacacattaaa 39126360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 9710778 - 9710728
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaattctgaaaaactagtg 60  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9710778 tgaccactatttttccacttagttaaccaaataaattctgagaaactagtg 9710728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 19624351 - 19624516
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcaca-cagaccatat 99  Q
    |||||| | ||||||||||||||||||||||||||||| |||||||||| |||| | |||||||| |||||        ||||||| || || |||||||    
T  19624351 aaatgcacgtgaccactatttttccacttagttaaccacataaattctggaaaaattgtggtcacacaact-aaaaaaatgtggtcgcatcataccatat 19624449  T
Q  100 atttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    |||||||||| | ||| ||||||| || |||||||| | | |||||||||| | |||| |||||||||    
T  19624450 atttggttaaattaaaattttcagcgttgtacaaag-gatgtacacattaaggatgtcaacctatcat 19624516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 11501298 - 11501243
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaag 135  Q
    |||||||||||||||||||||||||||||  ||||| |||||||||||||||||||    
T  11501298 tgtggtcacacagaccatatatttggttatttgaaaattttcagagtggtacaaag 11501243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 11509988 - 11510146
Alignment:
Q  9 atgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnn-tgtggtcacacagaccatatatttggtt 107  Q
    ||||||||||||||| || ||||||||| |||||||||||   ||| ||||| ||||||||||         | |||||||||| |  ||||||||  ||    
T  11509988 atgaccactattttttcaattagttaactaaataaattctaggaaaatagtgctcacgcaactaaaaaaaaatatggtcacacatattatatatttattt 11510087  T
Q  108 aactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||||||||||||||  |||||||| | |||||||||||| | ||||||||||||||    
T  11510088 aactgaaatttttcagaggtgtacaaag-gatatacacattaaggatgtctacctatcat 11510146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 44080244 - 44080191
Alignment:
Q  82 tggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaag 135  Q
    ||||||||||||  |||||||||||||||||||||| |||||||||||||||||    
T  44080244 tggtcacacagattatatatttggttaactgaaattgttcagagtggtacaaag 44080191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 33488363 - 33488447
Alignment:
Q  83 ggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||| ||| ||||||||||| ||||||| ||||||||||||||  || |||   |||||||||||||||||||||| |||||||    
T  33488363 ggtcatacataccatatatttagttaacttaaatttttcagagttatataaatgagtatacacattaaaggtgtctaactatcat 33488447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 27707719 - 27707837
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatata 100  Q
    ||||| ||||||||||||||||| |||||  |||||||||||||||||| |||| |||||| || |||||         | |||||||| ||||||||||    
T  27707719 aaatgtgcatgaccactattttttcacttgattaaccaaataaattctggaaaaatagtggacatgcaac-caaaaatatatggtcacagagaccatata 27707817  T
Q  101 tttggttaactgaaattttt 120  Q
    |||| |||||| ||||||||    
T  27707818 tttgattaacttaaattttt 27707837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 31545498 - 31545435
Alignment:
Q  98 atatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    ||||||| ||||||||||||||  ||||| |||||||| | |||||||||||||||||||||||    
T  31545498 atatttgattaactgaaattttcgagagtagtacaaagggatatacacattaaaggtgtctacc 31545435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 33488285 - 33488210
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaa-tttttcagagtggtacaaagtggtatacacattaaaggt 154  Q
    |||| |||||||||| ||||||||| |||||||||| ||||||||| | |||||||| ||| ||||||||||||||    
T  33488285 tgtgatcacacagactatatatttgattaactgaaaatttttcagaatagtacaaagaggtgtacacattaaaggt 33488210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 19280188 - 19280109
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    ||||||||| |||||||||||||||||||||| |||| |||   |||||||||||| ||| ||||| |||| ||||||||||    
T  19280188 tgtggtcactcagaccatatatttggttaactaaaatattt--tagtggtacaaaggggtgtacactttaagggtgtctacc 19280109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 42481355 - 42481409
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtca 64  Q
    |||||| |||||||| ||||||||||||||||||||||||||||| || ||||||    
T  42481355 tgaccattatttttctacttagttaaccaaataaattctgaaaaaataatggtca 42481409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13358155 - 13358102
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaa 54  Q
    |||||||| | |||||||||||||||| |||||||||||||||||| |||||||    
T  13358155 aaatgcgcgttaccactatttttccacatagttaaccaaataaattttgaaaaa 13358102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 44080314 - 44080422
Alignment:
Q  13 ccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactnnnnnnnntgtggtcacacagaccatatatttggttaactg 112  Q
    |||||||||||||||||||||||||||| ||||| || |||| |||||||| | |||||        |||||| |||||||| ||||  ||| |||||||    
T  44080314 ccactatttttccacttagttaaccaaaaaaattttggaaaaatagtggtcgcacaact-aaaaaaatgtggtaacacagactatatccttgattaactg 44080412  T
Q  113 aaatttttca 122  Q
    ||||||||||    
T  44080413 aaatttttca 44080422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 11509893 - 11509814
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtcta 159  Q
    |||||||||||| | |  |||||||||||  |||||||||| |||||||||||||| ||| ||||||||||  |||||||    
T  11509893 tgtggtcacacaaatcgcatatttggttatttgaaatttttaagagtggtacaaaggggtgtacacattaagtgtgtcta 11509814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 13359005 - 13359052
Alignment:
Q  85 tcacacagaccatatatttggttaactgaaatttttcagagtggtaca 132  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||||    
T  13359005 tcacacagaccatatatttaattaactgaaattttccagagtggtaca 13359052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 27079414 - 27079453
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttt 119  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  27079414 tgtggtcacacagaccatatatttggttaaccgaaatttt 27079453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 27085211 - 27085250
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttt 119  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  27085211 tgtggtcacacagaccatatatttggttaaccgaaatttt 27085250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 27335437 - 27335402
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaat 45  Q
    ||||||||||||||||||||||||||||||||||||    
T  27335437 tgaccactatttttccacttagttaaccaaataaat 27335402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 27364960 - 27364905
Alignment:
Q  112 gaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacctatcat 167  Q
    ||||||||||||| ||||| |||| ||| ||||||||||| |||||||||||||||    
T  27364960 gaaatttttcagaatggtataaaggggtgtacacattaaatgtgtctacctatcat 27364905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 34627351 - 34627292
Alignment:
Q  12 accactatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaact 71  Q
    |||| |||||||||| ||||||||||||||||||||  ||||| |||| |||||||||||    
T  34627351 accattatttttccatttagttaaccaaataaattcgaaaaaaatagtagtcacgcaact 34627292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 26308759 - 26308824
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacac 145  Q
    ||||| |||||| |||||||||||| |||||||||| ||||||||||  ||||||| ||| |||||    
T  26308759 tgtggccacacaaaccatatatttgattaactgaaaattttcagagttatacaaagaggtgtacac 26308824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 18733545 - 18733576
Alignment:
Q  14 cactatttttccacttagttaaccaaataaat 45  Q
    ||||||||||||||||||||||||||||||||    
T  18733545 cactatttttccacttagttaaccaaataaat 18733576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 23163314 - 23163252
Alignment:
Q  84 gtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacat 147  Q
    |||||| |||||||||||| | |||||||| |||||  |||||||||||||| |||||||||||    
T  23163314 gtcacatagaccatatattagattaactgatattttcgagagtggtacaaag-ggtatacacat 23163252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 27040706 - 27040761
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaag 135  Q
    |||| ||||||||| |||||||||||||||| ||||||||  ||||| ||||||||    
T  27040706 tgtgatcacacagatcatatatttggttaaccgaaattttctagagtagtacaaag 27040761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 27365043 - 27365008
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaat 45  Q
    ||||||||||||||||||||| ||||||||||||||    
T  27365043 tgaccactatttttccacttaattaaccaaataaat 27365008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 27079359 - 27079314
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaatt 46  Q
    |||||||| ||||||  |||||||||||||||||| ||||||||||    
T  27079359 aaatgcgcgtgaccatcatttttccacttagttaatcaaataaatt 27079314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 27085156 - 27085111
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaatt 46  Q
    |||||||| ||||||  |||||||||||||||||| ||||||||||    
T  27085156 aaatgcgcgtgaccatcatttttccacttagttaatcaaataaatt 27085111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 27707664 - 27707587
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtc 157  Q
    ||||| |||||| |||||||||||| |||| |||| ||||| | | || || |||| |||||||| ||||||||||||    
T  27707664 tgtgggcacacaaaccatatatttgattaattgaatttttttaaaatgatataaagaggtatacaaattaaaggtgtc 27707587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 55165100 - 55165145
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaattctgaaaaac 55  Q
    |||| ||||||||||||||||||||  ||||||||||||| |||||    
T  55165100 tgactactatttttccacttagttattcaaataaattctggaaaac 55165145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 24084 - 24020
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaattctgaaaaactagtggtcac 65  Q
    |||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  24084 aaatgcgcgtgaccactatttttccacttattttaccaaataaattctgaaaaactagtggtcac 24020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 21599 - 21678
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctacc 161  Q
    ||||||||||||||||||||||| |||||||||| |||||  | ||||| |||||   || |||||||||||||||||||||    
T  21599 tgtggtcacacagaccatatattcggttaactgagattttctaaagtggcacaaa--cgtgtacacattaaaggtgtctacc 21678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 21496 - 21420
Alignment:
Q  87 acacagaccatatatttggttaactgaaatttttcagagtggtacaaagtggtatacacattaaaggtgtctaccta 163  Q
    ||||||||| |||||||||||||||||||||||| | | ||||| |||  | | ||||||||||| |||||||||||    
T  21496 acacagaccgtatatttggttaactgaaattttttaaaatggtataaatggatgtacacattaaaagtgtctaccta 21420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 10669 - 10625
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaattctgaaaaa 54  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  10669 tgaccattatttttccacttagttaaccaaataaattctcaaaaa 10625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 10745 - 10789
Alignment:
Q  91 agaccatatatttggttaactgaaatttttcagagtggtacaaag 135  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||    
T  10745 agaccatatatttggttaattgaaattttctagagtggtacaaag 10789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 112191 - 112235
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaat 45  Q
    |||||| | ||||||||||||||||||||||||||| ||||||||    
T  112191 aaatgcacgtgaccactatttttccacttagttaactaaataaat 112235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 24957 - 25000
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaatttttcag 123  Q
    ||||||||||||||| |||||||||| |||||||||||| ||||    
T  24957 tgtggtcacacagactatatatttggctaactgaaatttctcag 25000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 24758 - 24798
Alignment:
Q  80 tgtggtcacacagaccatatatttggttaactgaaattttt 120  Q
    |||||||||| ||||||||||||||| |||||||| |||||    
T  24758 tgtggtcacatagaccatatatttggctaactgaatttttt 24798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 87077 - 87112
Alignment:
Q  10 tgaccactatttttccacttagttaaccaaataaat 45  Q
    ||||||||||||||| ||||||||||||||||||||    
T  87077 tgaccactatttttctacttagttaaccaaataaat 87112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 49492 - 49453
Alignment:
Q  85 tcacacagaccatatatttggttaactgaaatttttcaga 124  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  49492 tcacacataccatatatttggttaacttaaatttttcaga 49453  T

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Target: scaffold0291 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5903 - 5947
Alignment:
Q  1 aaatgcgcatgaccactatttttccacttagttaaccaaataaat 45  Q
    |||| ||| |||||||||||||| |||||| ||||||||||||||    
T  5903 aaatacgcgtgaccactatttttgcacttaattaaccaaataaat 5947  T

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