View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18486_low_15 (Length: 284)
Name: NF18486_low_15
Description: NF18486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18486_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 19147329 - 19147261
Alignment:
| Q |
142 |
cgatgcgaatatcatcataaacaattcacaaatacatcattataaatgcaa-aaaatcatcgataaaga |
209 |
Q |
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| T |
19147329 |
cgatgcgaatatcatcataaacaattcacaaatacatcattataaatgcaaaaaaatcattgataaaga |
19147261 |
T |
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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 19147016 - 19146966
Alignment:
| Q |
218 |
catcaccaaggagataatctactattggaacacgaggagccacacaagtac |
268 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
19147016 |
catcaccaaggagataatctactattggcacacgaggagccacacacgtac |
19146966 |
T |
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