View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18486_low_16 (Length: 251)
Name: NF18486_low_16
Description: NF18486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18486_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 47079808 - 47079569
Alignment:
| Q |
1 |
gagccaaacaagctgttggaggtgttaatgctcaaactggaaccgctaacaataacaatgacgcagtcgatttcttctacactgctcaaggttttcaacc |
100 |
Q |
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| T |
47079808 |
gagccaaacaagctgtcggaggtgttaatgctcaaactggaaccactaacaataacaatgacgccgtcgatttcttctacaccgctcaaggttttcaacc |
47079709 |
T |
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| Q |
101 |
attgttcacgcaagttgaggtaccaaccatttctaattcatcatcatcgttatcaccgttactgctgatacagattattttgcaaatgtttacaccaata |
200 |
Q |
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| T |
47079708 |
attgttcacgcatgttgaggtaccaaccatttctaattcatcatcatcgttatcactgttactgctgatacagattgttttgcaaatgtttacaccaata |
47079609 |
T |
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| Q |
201 |
tttcaaattttggactaaatattgtgtgtttttgattctt |
240 |
Q |
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| T |
47079608 |
ttttaaattttggactaaatattgtgtgtttttgattctt |
47079569 |
T |
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Back To:
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 18227879 - 18227928
Alignment:
| Q |
57 |
aatgacgcagtcgatttcttctacactgctcaaggttttcaaccattgtt |
106 |
Q |
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| T |
18227879 |
aatgacgccgttgatttcttctacaccgcgcaaggttttcagccattgtt |
18227928 |
T |
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