View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18486_low_2 (Length: 687)
Name: NF18486_low_2
Description: NF18486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18486_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 516; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 11 - 565
Target Start/End: Original strand, 51010444 - 51011001
Alignment:
| Q |
11 |
cacagaagaggaacatgataacaaaagcttgatgacagaaaataatcaatatatgtttgtggatcctttagacacaaaaaagaagcaagaaaatgttgtt |
110 |
Q |
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| T |
51010444 |
cacagaagaggaacatgatagcaaaagcttgatgacagaaaataatcaatatgtgtttgtggatcctttagacacaaaaaagaagcaagaaaatgttgtt |
51010543 |
T |
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| Q |
111 |
ggcagatcagattcaatgtcagattgcagtgatcaaaatgaagaagaggatgatggaaaatataggagaagaagtggaaaaggaaaccaatcaaagaacc |
210 |
Q |
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| T |
51010544 |
ggcagatcagattcaatgtcagattgcagtgatcaaaatgaagaagaggatgatggaaaatataggagaagaagtggaaaaggaaaccaatcaaagaacc |
51010643 |
T |
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| Q |
211 |
ttgttgctgagagaaaaagaaggaagaaactgaatgataggttatataaccttcgttcattggttccaagaatctcaaagcttgatagagcttctattct |
310 |
Q |
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| T |
51010644 |
ttgttgctgagagaaaaagaaggaagaaactgaatgataggttatataaccttcgttcattggttccaagaatctcaaagcttgatagagcttctattct |
51010743 |
T |
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| Q |
311 |
tggtgatgctattgaatttgtgaaggatttgcagaaacaagtgaaggaacttcaagatgaacttgaggaaaattcagaaacaggaactgaaagtaactgc |
410 |
Q |
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| T |
51010744 |
tggtgatgctattgaatttgtgaaggatttgcagaagcaagtgaaggaacttcaagatgaacttgaggaaaattcagaaacaggaactgaaagtaactgc |
51010843 |
T |
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| Q |
411 |
gtatatgttgatggtgttcaagttaaaccaaataataataacaatgttacaaaagcagaacatggttttcatgttgggaatggctatgtttcaaaacaaa |
510 |
Q |
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| T |
51010844 |
gtatatgttgatggtgttcaagttaaagcaaataataataacaatgttacaaaagcagaacatggttttcatgttgggaatggctatgtatcaaaacaaa |
51010943 |
T |
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| Q |
511 |
agcaagaagatgttggta---atgttactgacaagcagacacagcagatggaggtaac |
565 |
Q |
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| T |
51010944 |
agcaggaagatgttggtactgttgttactgacaagcagacacagcagatggaggtaac |
51011001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 596 - 671
Target Start/End: Original strand, 51011043 - 51011114
Alignment:
| Q |
596 |
taaaaagtgtagtaacagatgaatgaatattgcaggcacaagtggaagtggctcagatagatgggaatgagtactt |
671 |
Q |
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| T |
51011043 |
taaaaagtgtagtaaca----catgaatattgcaggcacaagtggaagtggctcagatagatggtaatgagtactt |
51011114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 524
Target Start/End: Original strand, 51014077 - 51014126
Alignment:
| Q |
475 |
gttttcatgttgggaatggctatgtttcaaaacaaaagcaagaagatgtt |
524 |
Q |
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| T |
51014077 |
gttttcatgttccgaatggctatgtttcaaaacaaaaacaggaaggtgtt |
51014126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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