View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18486_low_6 (Length: 550)
Name: NF18486_low_6
Description: NF18486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18486_low_6 |
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| [»] chr5 (9 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 19 - 550
Target Start/End: Complemental strand, 1047355 - 1046825
Alignment:
| Q |
19 |
gaaatgtgcggtgagttaggtcaaattgtgacaacaccgtgatttagttgatattaaaaggtgtagtttttatctgaatcacgattattcattatgattc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1047355 |
gaaatgtgcggtgagttaggtcaaattgtgacaacaccgtgatttagttgatattaaaaagtgtagtttttatctgaatcacgattattcattatgattc |
1047256 |
T |
|
| Q |
119 |
tgaaaatccaccatcaattcaaacattaaattaccaactttattgcacaaatgtggccacccttacatgctacaagtacaacatatgtttattcattcaa |
218 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1047255 |
tgaaaatccaccatcaattcaaacattcaattaccaactttattgcaaaaatgtggccacccttacatgctacaagtacaacatatgtttattcattcaa |
1047156 |
T |
|
| Q |
219 |
gaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcattaagtgcaaacctctttggcaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1047155 |
gaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcattaagtgcaaatctctttggcaa |
1047056 |
T |
|
| Q |
319 |
atctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatcccgtctagtctttcatagcttccggtaac |
418 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1047055 |
atctggattagctatgaat-aaacggtcgtaagcaacaagatctaccctattttcagctatagcattgatcccgtctagtctttcatagcttccggtaac |
1046957 |
T |
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| Q |
419 |
catgaaagtgtcattgaaagcctttctcgctggcaccaagttgtgaagacattttgttttatcgtcaatagtttcattacttattcattctaccatatga |
518 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1046956 |
catgaaagtgccattgaaagcctttctcactggcaccaagttgtgaagacattttgttttatcatcaatagtttcattacttattcattctaccatatga |
1046857 |
T |
|
| Q |
519 |
caatacaaaataccatatttattgagggcatt |
550 |
Q |
| |
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||||||| |||||||||||||||||||||||| |
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| T |
1046856 |
caatacagaataccatatttattgagggcatt |
1046825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 195 - 550
Target Start/End: Complemental strand, 1053851 - 1053500
Alignment:
| Q |
195 |
tacaacatatgtttattcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagc |
294 |
Q |
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|||| |||||||||| | |||||||| |||||||||| |||||||| | |||||||||||||||| ||||||||||| ||||||||||||| || ||||| |
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| T |
1053851 |
tacatcatatgtttaattattcaagagaagggtagtcagtataacctataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagc |
1053752 |
T |
|
| Q |
295 |
attaagtgcaaacctctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatcccgtc |
394 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||| |||||| ||||| | ||||||| |||||||| |||||||||||||||||||||||| || || |
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| T |
1053751 |
attaagtgcaaatctctttggtaaatctggattagatatgaa-caaacgaccataagcaataagatctgccctattttcagctatagcattgattccatc |
1053653 |
T |
|
| Q |
395 |
tagtctttcatagcttccggtaaccatgaaagtgtcattgaaagcctttctcgctggcaccaagttgtgaagacattttgttttatcgtcaatagtttca |
494 |
Q |
| |
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| |||||||||||| ||| |||||||| ||||| |||||||| ||||||| || ||||||| | | | |||||| ||||| || |||| | |||| |
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| T |
1053652 |
ttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattcagttttctcatcaagaatttc- |
1053554 |
T |
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| Q |
495 |
ttacttattcattctaccatatgacaatacaaaataccatatttattgagggcatt |
550 |
Q |
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|| || ||| |||||||||||||| | |||||||||||||||||||||||| |
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| T |
1053553 |
--cattcttggttccaccatatgacaataaagaataccatatttattgagggcatt |
1053500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 210 - 456
Target Start/End: Complemental strand, 1044578 - 1044333
Alignment:
| Q |
210 |
ttcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcattaagtgcaaacct |
309 |
Q |
| |
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||||||||||||| || ||||| || ||||||| ||| ||||||||| || ||||||||||| ||||||||||||| || ||||||||||||||||| || |
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| T |
1044578 |
ttcattcaagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctccctattatacttgttgagaggagcattaagtgcaaatct |
1044479 |
T |
|
| Q |
310 |
ctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatcccgtctagtctttcatagct |
409 |
Q |
| |
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|||||||||||||||||| |||| ||| ||||| | ||| | |||||||||| | | |||||||||||||||| |||||||||| |||| ||||||| |
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| T |
1044478 |
ctttggcaaatctggatttgctaagaa-caaacgaccataaactacaagatctgccttgttttcagctatagcatcgatcccgtcttgtctgtcatagcc |
1044380 |
T |
|
| Q |
410 |
tccggtaaccatgaaagtgtcattgaaagcctttctcgctggcacca |
456 |
Q |
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||| | | ||||||||| | ||||||||||||||||| |||||||| |
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| T |
1044379 |
tcctgcagccatgaaagagccattgaaagcctttctcattggcacca |
1044333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 205 - 391
Target Start/End: Complemental strand, 1059106 - 1058921
Alignment:
| Q |
205 |
gtttattcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcattaagtgca |
304 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||| | ||||||||| |||||| |||||||| || | |||||||||||||| ||||||||||||||| |
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| T |
1059106 |
gtttcttcattcaagaaaagggtagtcagtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcattaagtgca |
1059007 |
T |
|
| Q |
305 |
aacctctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatccc |
391 |
Q |
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| T |
1059006 |
aatctcttcggcaaatctggattagctaagaa-caaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatccc |
1058921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 185 - 446
Target Start/End: Complemental strand, 1034215 - 1033956
Alignment:
| Q |
185 |
atgctacaagtacaacatatgtttattcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgt |
284 |
Q |
| |
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||||||||| |||||||| ||| ||||||||||||| || ||||| |||||||| | ||| |||||||||||| ||||||||||| | ||||| || | |
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| T |
1034215 |
atgctacaa-tacaacattgttttcttcattcaagaaagggatagtccgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttat |
1034117 |
T |
|
| Q |
285 |
ttaggggagcattaagtgcaaacctctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcat |
384 |
Q |
| |
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| || ||||| || |||||||| ||||| |||||||||||||| |||| ||| ||||| | ||| |||||||||||| |||||| || |||||||||| |
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| T |
1034116 |
tgagaggagcgtttagtgcaaatctcttcggcaaatctggattcgctaagaa-caaacgaccataaacaacaagatctgccctattatctgctatagcat |
1034018 |
T |
|
| Q |
385 |
tgatcccgtctagtctttcatagcttccggtaaccatgaaagtgtcattgaaagcctttctc |
446 |
Q |
| |
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||||||| ||| |||| ||||| | ||| | |||||||||||| ||||||||||||||||| |
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| T |
1034017 |
tgatcccatcttgtctgtcataacctcccgcaaccatgaaagtaccattgaaagcctttctc |
1033956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 210 - 446
Target Start/End: Complemental strand, 1071920 - 1071685
Alignment:
| Q |
210 |
ttcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcattaagtgcaaacct |
309 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||| | | ||||||||| | |||||||||||||| ||||||| ||||||||| || |
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| T |
1071920 |
ttcattcaagaaaagggtagtcagtataacctagaactggatcagaaacgtaaaatgtctccctgttatacttgtttagaggagcatcaagtgcaaatct |
1071821 |
T |
|
| Q |
310 |
ctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatcccgtctagtctttcatagct |
409 |
Q |
| |
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||||||||||||||||||||||| ||| ||||| | || |||| || |||| ||| ||||||||||| ||||||||||| || ||| || || | |
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| T |
1071820 |
ctttggcaaatctggattagctaagaa-caaacgaccatatacaactaggtctgccctgttttcagctatggcattgatcccatcatgtcggtcgtaacc |
1071722 |
T |
|
| Q |
410 |
tccggtaaccatgaaagtgtcattgaaagcctttctc |
446 |
Q |
| |
|
||| | ||||||||||||| | ||||| ||||||||| |
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| T |
1071721 |
tcctgcaaccatgaaagtgcctttgaaggcctttctc |
1071685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 205 - 446
Target Start/End: Complemental strand, 1066198 - 1065958
Alignment:
| Q |
205 |
gtttattcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcattaagtgca |
304 |
Q |
| |
|
|||| ||||||||||||| |||||||| |||||||| ||||||||||||||| || |||| |||||| | ||||| ||||| || ||||||| ||||||| |
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| T |
1066198 |
gtttcttcattcaagaaaggggtagtcagtataacctagaactggatcagaaatgtagaacgtctccctgttatatttgttcagaggagcatcaagtgca |
1066099 |
T |
|
| Q |
305 |
aacctctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatcccgtctagtctttca |
404 |
Q |
| |
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|| |||||||| |||||||||||||||| ||| ||||| | || ||||||| |||| ||| ||||||||||| ||||||||||| || ||| || |
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| T |
1066098 |
aatctctttggtaaatctggattagctaagaa-caaacgaccatatacaacaaggtctgccctgttttcagctatggcattgatcccatcatgtcggtcg |
1066000 |
T |
|
| Q |
405 |
tagcttccggtaaccatgaaagtgtcattgaaagcctttctc |
446 |
Q |
| |
|
|| | ||| | ||||||||||||| | ||||| ||||||||| |
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| T |
1065999 |
taacctcctgcaaccatgaaagtgcctttgaaggcctttctc |
1065958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 216 - 471
Target Start/End: Original strand, 1640371 - 1640625
Alignment:
| Q |
216 |
caagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcattaagtgcaaacctctttgg |
315 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| |||||||| ||| ||||||| ||| ||||||||||| || ||||||| || || || |||||||| |
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| T |
1640371 |
caagaaaagggtagtctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttgg |
1640470 |
T |
|
| Q |
316 |
caaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatcccgtctagtctttcatagcttccggt |
415 |
Q |
| |
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||||||||||||| ||| || || || | |||||||||||||||| | |||||||| |||| |||| ||||| ||| ||| ||||| ||||| |
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| T |
1640471 |
taaatctggattagatat-aaacaagcgaccataagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggc |
1640569 |
T |
|
| Q |
416 |
aaccatgaaagtgtcattgaaagcctttctcgctggcaccaagttgtgaagacatt |
471 |
Q |
| |
|
||| || ||||| ||||||| || |||||| |||||||||| |||||||||||| |
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| T |
1640570 |
aactataaaagttccattgaaggcttttctcattggcaccaagctgtgaagacatt |
1640625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 1065897 - 1065857
Alignment:
| Q |
510 |
accatatgacaatacaaaataccatatttattgagggcatt |
550 |
Q |
| |
|
||||||||||| || | |||||||||||||||||||||||| |
|
|
| T |
1065897 |
accatatgacagtaaagaataccatatttattgagggcatt |
1065857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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