View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18487_high_1 (Length: 306)
Name: NF18487_high_1
Description: NF18487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18487_high_1 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 46121394 - 46121089
Alignment:
| Q |
1 |
ttttagaatataataaacccacttgcagttgcactgatactagacattcattagcctgacttagtttggaaaatgcattcaactgccttatctttaatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46121394 |
ttttagaatataataaacccacttgcagttgcactgatactagacattcattagcctgacttagtttggaaaatgcattcaactgccttatctttaatat |
46121295 |
T |
|
| Q |
101 |
catcatcctttagctaccaaacaaggttgttccatccgagttgctttgctagctgcgtgagggcctaccatctttgcatcaacgaatgcataaaaacatc |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46121294 |
catcatccttgagctaccaaacaaggttgttccatccgagttgctttgctagctgcgtgagggcctaccatctttgcatcaacgaatgcataaaaacatc |
46121195 |
T |
|
| Q |
201 |
accaacgctatttgatacaaaagtttcataggaacaaatacttcatatccattcatatccaggtaaaggggaaaaaatgcctgaaaaatatataaataat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46121194 |
accaacgctatttgatacaaaagtttcataggaacaaatacttcatatccattcatatccaggtaaaggggaaaaaatgcctgaaaaatatataaataat |
46121095 |
T |
|
| Q |
301 |
tgacaa |
306 |
Q |
| |
|
|||||| |
|
|
| T |
46121094 |
tgacaa |
46121089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University