View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18487_high_3 (Length: 243)
Name: NF18487_high_3
Description: NF18487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18487_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 12962216 - 12961997
Alignment:
| Q |
17 |
atatggtacttccaggtttcctataatggcataatgatagttcaatagatatttcaatcatcagttcatcaattgatattatctttctggattgtattct |
116 |
Q |
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| T |
12962216 |
atatggtacttccaggtttcctataatggcataatgatagttcaatagatatttcaatcatcagttcatcaattgatattatctttctggattgtattct |
12962117 |
T |
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| Q |
117 |
gatataatctctttttgcaggctccagtaaattatgtttctctccgttgtgtaaaaccaagtttgaggccactgtctatggcaatttctactgtttcaat |
216 |
Q |
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| T |
12962116 |
gatataatctctttttgcaggctccagtaaattatgtttctctccgttgtgtaaaaccaagtttgaggccactgtctatggcaatttctactgtttcaat |
12962017 |
T |
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| Q |
217 |
ccatatctttgatgatgtcc |
236 |
Q |
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| T |
12962016 |
ccatatctttggtgatgtcc |
12961997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 12937663 - 12937603
Alignment:
| Q |
70 |
tcaatcatcagttcatcaattgatattatctttctggattgtattctgatataatctcttt |
130 |
Q |
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| T |
12937663 |
tcaattatctgttcatcaattgatattatctttctggattgtattctgatataatctcttt |
12937603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 12951816 - 12951766
Alignment:
| Q |
80 |
gttcatcaattgatattatctttctggattgtattctgatataatctcttt |
130 |
Q |
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| T |
12951816 |
gttcatcaattgatattatctttctggattgtattctgatataatctcttt |
12951766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 2348062 - 2348127
Alignment:
| Q |
146 |
aattatgtttctctccgttgtgtaaaaccaagtttgaggccactgtctatggcaatttctactgtt |
211 |
Q |
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| T |
2348062 |
aattatgtatgtctccattgtgttaaaccaagtttgaggccactatccatggccatgtctactgtt |
2348127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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